-
2
-
-
0034040754
-
Functional inferences from reconstructed evolutionary biology involving rectified databases-an evolutionarily grounded approach to functional genomics
-
See also references therein
-
Benner SA, Chamberlin SG, Liberles DA, Govindarajan S, Knecht L. Functional inferences from reconstructed evolutionary biology involving rectified databases-an evolutionarily grounded approach to functional genomics. Res Microbiol 2000;151:97-106. See also references therein.
-
(2000)
Res Microbiol
, vol.151
, pp. 97-106
-
-
Benner, S.A.1
Chamberlin, S.G.2
Liberles, D.A.3
Govindarajan, S.4
Knecht, L.5
-
3
-
-
0037161811
-
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
-
Da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA, Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos Santos M, Truffi D, Tsai SM, White FF, Setubal JC, Kitajima JP. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 2002;417:459-463.
-
(2002)
Nature
, vol.417
, pp. 459-463
-
-
Da Silva, A.C.1
Ferro, J.A.2
Reinach, F.C.3
Farah, C.S.4
Furlan, L.R.5
Quaggio, R.B.6
Monteiro-Vitorello, C.B.7
Van Sluys, M.A.8
Almeida, N.F.9
Alves, L.M.10
Do Amaral, A.M.11
Bertolini, M.C.12
Camargo, L.E.13
Camarotte, G.14
Cannavan, F.15
Cardozo, J.16
Chambergo, F.17
Ciapina, L.P.18
Cicarelli, R.M.19
Coutinho, L.L.20
Cursino-Santos, J.R.21
El-Dorry, H.22
Faria, J.B.23
Ferreira, A.J.24
Ferreira, R.C.25
Ferro, M.I.26
Formighieri, E.F.27
Franco, M.C.28
Greggio, C.C.29
Gruber, A.30
Katsuyama, A.M.31
Kishi, L.T.32
Leite, R.P.33
Lemos, E.G.34
Lemos, M.V.35
Locali, E.C.36
Machado, M.A.37
Madeira, A.M.38
Martinez-Rossi, N.M.39
Martins, E.C.40
Meidanis, J.41
Menck, C.F.42
Miyaki, C.Y.43
Moon, D.H.44
Moreira, L.M.45
Novo, M.T.46
Okura, V.K.47
Oliveira, M.C.48
Oliveira, V.R.49
Pereira, H.A.50
Rossi, A.51
Sena, J.A.52
Silva, C.53
De Souza, R.F.54
Spinola, L.A.55
Takita, M.A.56
Tamura, R.E.57
Teixeira, E.C.58
Tezza, R.I.59
Trindade Dos Santos, M.60
Truffi, D.61
Tsai, S.M.62
White, F.F.63
Setubal, J.C.64
Kitajima, J.P.65
more..
-
4
-
-
0035861496
-
The genome of the natural genetic engineer Agrobacterium tumefaciens C58
-
Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF Jr, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, Bovee D Sr, Chapman P, Clendenning J, Deatherage G, Gillet W, Grant C, Kutyavin T, Levy R, Li MJ, McClelland E, Palmieri A, Raymond C, Rouse G, Saenphimmachak C, Wu Z, Romero P, Gordon D, Zhang S, Yoo H, Tao Y, Biddle P, Jung M, Krespan W, Perry M, Gordon-Kamm B, Liao L, Kim S, Hendrick C, Zhao ZY, Dolan M, Chumley F, Tingey SV, Tomb JF, Gordon MP, Olson MV, Nester EW. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 2001;294:2317-2323.
-
(2001)
Science
, vol.294
, pp. 2317-2323
-
-
Wood, D.W.1
Setubal, J.C.2
Kaul, R.3
Monks, D.E.4
Kitajima, J.P.5
Okura, V.K.6
Zhou, Y.7
Chen, L.8
Wood, G.E.9
Almeida Jr., N.F.10
Woo, L.11
Chen, Y.12
Paulsen, I.T.13
Eisen, J.A.14
Karp, P.D.15
Bovee Sr., D.16
Chapman, P.17
Clendenning, J.18
Deatherage, G.19
Gillet, W.20
Grant, C.21
Kutyavin, T.22
Levy, R.23
Li, M.J.24
McClelland, E.25
Palmieri, A.26
Raymond, C.27
Rouse, G.28
Saenphimmachak, C.29
Wu, Z.30
Romero, P.31
Gordon, D.32
Zhang, S.33
Yoo, H.34
Tao, Y.35
Biddle, P.36
Jung, M.37
Krespan, W.38
Perry, M.39
Gordon-Kamm, B.40
Liao, L.41
Kim, S.42
Hendrick, C.43
Zhao, Z.Y.44
Dolan, M.45
Chumley, F.46
Tingey, S.V.47
Tomb, J.F.48
Gordon, M.P.49
Olson, M.V.50
Nester, E.W.51
more..
-
5
-
-
0033664559
-
Classification of transmembrane protein families in the Caenorhabditis elegans genome and identification of human orthologs
-
Remm M, Sonnhammer E. Classification of transmembrane protein families in the Caenorhabditis elegans genome and identification of human orthologs. Genome Res 2000;10:1679-1689.
-
(2000)
Genome Res
, vol.10
, pp. 1679-1689
-
-
Remm, M.1
Sonnhammer, E.2
-
6
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski LB, Golding GB. The closest BLAST hit is often not the nearest neighbor. J Mol Evol 2001;52:540-542.
-
(2001)
J Mol Evol
, vol.52
, pp. 540-542
-
-
Koski, L.B.1
Golding, G.B.2
-
7
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE, Sonnhammer EL. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 2001;314:1041-1052.
-
(2001)
J Mol Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
8
-
-
0036125446
-
Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)
-
Lee Y, Sultana R, Pertea G, Cho J, Karamycheva S, Tsai J, Parvizi B, Cheung F, Antonescu V, White J, Holt I, Liang F, Quackeribush J. Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA). Genome Res 2002;12:493-502.
-
(2002)
Genome Res
, vol.12
, pp. 493-502
-
-
Lee, Y.1
Sultana, R.2
Pertea, G.3
Cho, J.4
Karamycheva, S.5
Tsai, J.6
Parvizi, B.7
Cheung, F.8
Antonescu, V.9
White, J.10
Holt, I.11
Liang, F.12
Quackeribush, J.13
-
9
-
-
0013017592
-
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
-
Zmasek CM, Eddy SR. RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs. BMC Bioinformatics 2002;3:14.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 14
-
-
Zmasek, C.M.1
Eddy, S.R.2
-
10
-
-
0242490786
-
Functionality of system components: Conservation of protein function in protein feature space
-
Jensen LJ, Ussery DW, Brunak S. Functionality of system components: conservation of protein function in protein feature space. Genome Res 2003;13:2444-2449.
-
(2003)
Genome Res
, vol.13
, pp. 2444-2449
-
-
Jensen, L.J.1
Ussery, D.W.2
Brunak, S.3
-
11
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003;4:41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
12
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001;17:847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
13
-
-
0035984484
-
Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes
-
Quentin Y, Chabalier J, Fichant G. Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes. Comput Chem 2002;26:447-457.
-
(2002)
Comput Chem
, vol.26
, pp. 447-457
-
-
Quentin, Y.1
Chabalier, J.2
Fichant, G.3
-
14
-
-
0032509179
-
Comparison of the complete protein sets of worm and yeast: Orthology and divergence
-
Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 1998;282:2022-2028.
-
(1998)
Science
, vol.282
, pp. 2022-2028
-
-
Chervitz, S.A.1
Aravind, L.2
Sherlock, G.3
Ball, C.A.4
Koonin, E.V.5
Dwight, S.S.6
Harris, M.A.7
Dolinski, K.8
Mohr, S.9
Smith, T.10
Weng, S.11
Cherry, J.M.12
Botstein, D.13
-
15
-
-
0032786233
-
A phylogenomic study of DNA repair genes, proteins, and processes
-
Eisen JA, Hanawalt PC. A phylogenomic study of DNA repair genes, proteins, and processes. Mutat Res 1999;435:171-213.
-
(1999)
Mutat Res
, vol.435
, pp. 171-213
-
-
Eisen, J.A.1
Hanawalt, P.C.2
-
16
-
-
0034635976
-
Predicting ligand-binding function in families of bacterial receptors
-
Johnson JM, Church GM. Predicting ligand-binding function in families of bacterial receptors. Proc Natl Acad Sci USA 2000;97:3965-3970.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3965-3970
-
-
Johnson, J.M.1
Church, G.M.2
-
18
-
-
0036595632
-
Phylogenetic analysis and gene functional predictions: Phylogenomics in action
-
Eisen JA, Wu M. Phylogenetic analysis and gene functional predictions: phylogenomics in action. Theor Popul Biol 2002;61:481-487.
-
(2002)
Theor Popul Biol
, vol.61
, pp. 481-487
-
-
Eisen, J.A.1
Wu, M.2
-
19
-
-
0037126208
-
Phylogenetic analysis of 277 human G-protein-coupled receptors as a tool for the prediction of orphan receptor ligands
-
Joost P, Methner A. Phylogenetic analysis of 277 human G-protein-coupled receptors as a tool for the prediction of orphan receptor ligands. Genome Biol 2002;3:RESEARCH0063.
-
(2002)
Genome Biol
, vol.3
-
-
Joost, P.1
Methner, A.2
-
20
-
-
0036295212
-
Classification and evolution of P-loop GTPases and related ATPases
-
Leipe DD, Wolf YI, Koonin EV, Aravind L. Classification and evolution of P-loop GTPases and related ATPases. J Mol Biol 2002;317:41-72.
-
(2002)
J Mol Biol
, vol.317
, pp. 41-72
-
-
Leipe, D.D.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
21
-
-
0036075245
-
Tracking adaptive evolutionary events in genomic sequences
-
Liberles DA, Wayne ML. Tracking adaptive evolutionary events in genomic sequences. Genome Biol 2002;3:REVIEWS1018.
-
(2002)
Genome Biol
, vol.3
-
-
Liberles, D.A.1
Wayne, M.L.2
-
22
-
-
0036857358
-
QuickTree: Building huge neighbour-joining trees of protein sequences
-
Howe K, Bateman A, Durbin R. QuickTree: building huge neighbour-joining trees of protein sequences. Bioinformatics 2002;18:1546-1547.
-
(2002)
Bioinformatics
, vol.18
, pp. 1546-1547
-
-
Howe, K.1
Bateman, A.2
Durbin, R.3
-
24
-
-
0034707210
-
Evolution of gene families
-
Ohta T. Evolution of gene families. Gene 2000;259:45-52.
-
(2000)
Gene
, vol.259
, pp. 45-52
-
-
Ohta, T.1
-
25
-
-
0034567049
-
Identification of domains from protein sequences
-
Ponting CP, Birney E. Identification of domains from protein sequences. Methods Mol Biol 2000;143:53-69.
-
(2000)
Methods Mol Biol
, vol.143
, pp. 53-69
-
-
Ponting, C.P.1
Birney, E.2
-
26
-
-
0000120520
-
ProDom: Automated clustering of homologous domains
-
Servant F, Bru C, Carrere S, Courcelle E, Gouzy J, Peyruc D, Kahn D. ProDom: automated clustering of homologous domains. Brief Bioinform 2002;3:246-251,
-
(2002)
Brief Bioinform
, vol.3
, pp. 246-251
-
-
Servant, F.1
Bru, C.2
Carrere, S.3
Courcelle, E.4
Gouzy, J.5
Peyruc, D.6
Kahn, D.7
-
28
-
-
0032436341
-
DOMO: A new database of aligned protein domains
-
Gracy J, Argos P. DOMO: a new database of aligned protein domains. Trends Biochem Sci 1998;23:495-497.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 495-497
-
-
Gracy, J.1
Argos, P.2
-
29
-
-
0037412250
-
ABCG subfamily of human ATP-binding cassette proteins
-
Lorkowski S, Cullen P. ABCG subfamily of human ATP-binding cassette proteins. Pure Appl Chem 2002;74:2057-2081.
-
(2002)
Pure Appl Chem
, vol.74
, pp. 2057-2081
-
-
Lorkowski, S.1
Cullen, P.2
-
31
-
-
0034917716
-
The human ATP-binding cassette (ABC) transporter superfamily
-
Dean M, Rzhetsky A, Allikmets R. The human ATP-binding cassette (ABC) transporter superfamily. Genome Res 2001;11:1156-1166.
-
(2001)
Genome Res
, vol.11
, pp. 1156-1166
-
-
Dean, M.1
Rzhetsky, A.2
Allikmets, R.3
-
32
-
-
0035014565
-
The ABC of ABCS: A phylogenetic and functional classification of ABC systems in living organisms
-
Dassa E, Bouige P. The ABC of ABCS: a phylogenetic and functional classification of ABC systems in living organisms. Res Microbiol 2001;152:211-229.
-
(2001)
Res Microbiol
, vol.152
, pp. 211-229
-
-
Dassa, E.1
Bouige, P.2
-
33
-
-
0345170902
-
BLASTing proteomes, yielding phylogenies
-
Fuellen G, Spitzer M, Cullen P, Lorkowski S. BLASTing proteomes, yielding phylogenies. In Silico Biol 2003;3:313-319.
-
(2003)
In Silico Biol
, vol.3
, pp. 313-319
-
-
Fuellen, G.1
Spitzer, M.2
Cullen, P.3
Lorkowski, S.4
-
34
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
35
-
-
0031753606
-
A comparative analysis of ABC transporters in complete microbial genomes
-
Tomii K, Kanehisa M. A comparative analysis of ABC transporters in complete microbial genomes. Genome Res 1998;8:1048-1059.
-
(1998)
Genome Res
, vol.8
, pp. 1048-1059
-
-
Tomii, K.1
Kanehisa, M.2
-
36
-
-
0028215587
-
Sequence relationships between integral inner membrane proteins of binding protein-dependent transport systems: Evolution by recurrent gene duplications
-
Saurin W, Dassa E. Sequence relationships between integral inner membrane proteins of binding protein-dependent transport systems: evolution by recurrent gene duplications. Protein Sci 1994;3:325-344.
-
(1994)
Protein Sci
, vol.3
, pp. 325-344
-
-
Saurin, W.1
Dassa, E.2
-
37
-
-
0027256676
-
Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria
-
Tam R, Saier MH. Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Microbiol Rev 1993;57:320-346.
-
(1993)
Microbiol Rev
, vol.57
, pp. 320-346
-
-
Tam, R.1
Saier, M.H.2
-
38
-
-
0031943304
-
The Escherichia coli ATP-binding cassette(ABC) proteins
-
Linton KJ, Higgins CF. The Escherichia coli ATP-binding cassette(ABC) proteins. Mol Microbiol 1998;28:5-13.
-
(1998)
Mol Microbiol
, vol.28
, pp. 5-13
-
-
Linton, K.J.1
Higgins, C.F.2
-
39
-
-
0033819143
-
The ATP binding cassette (ABC) transport systems of Mycobacterium tuberculosis
-
2000
-
Braibant M, Gilot P, Content J. 2000. The ATP binding cassette (ABC) transport systems of Mycobacterium tuberculosis. FEMS Microbiol Rev 2000;24:449-467.
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 449-467
-
-
Braibant, M.1
Gilot, P.2
Content, J.3
-
40
-
-
0032512051
-
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
-
Andersson SG, Zomorodipour A, Andersson JO, Sicheritz-Ponten T, Alsmark UC, Podowski RM, Naslund AK, Eriksson AS, Winkler HH, Kurland CG. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 1998;396:133-140.
-
(1998)
Nature
, vol.396
, pp. 133-140
-
-
Andersson, S.G.1
Zomorodipour, A.2
Andersson, J.O.3
Sicheritz-Ponten, T.4
Alsmark, U.C.5
Podowski, R.M.6
Naslund, A.K.7
Eriksson, A.S.8
Winkler, H.H.9
Kurland, C.G.10
-
42
-
-
0034913239
-
The origin and early evolution of mitochondria
-
Gray MW, Burger G, Lang BF. The origin and early evolution of mitochondria. Genome Biol 2001;2:REVIEWS1018.
-
(2001)
Genome Biol
, vol.2
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
43
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 2002;99:12246-12251.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, A.4
Cornelsen, S.5
Lins, T.6
Leister, D.7
Stoebe, B.8
Hasegawa, M.9
Penny, D.10
-
44
-
-
18444384216
-
Database resources of the National Center for Biotechnology Information: 2002 Update
-
Wheeler DL, Church DM, Lash AE, Leipe DD, Madden TL, Pontius JU, Schuler GD, Schriml LM, Tatusova TA, Wagner L, Rapp BA. Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res 2002;30:13-16.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 13-16
-
-
Wheeler, D.L.1
Church, D.M.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Tatusova, T.A.9
Wagner, L.10
Rapp, B.A.11
-
45
-
-
0027491666
-
A method to recognize distant repeats in protein sequences
-
Heringa J, Argos P. A method to recognize distant repeats in protein sequences. Proteins 1993;17:391-411.
-
(1993)
Proteins
, vol.17
, pp. 391-411
-
-
Heringa, J.1
Argos, P.2
-
46
-
-
0032945593
-
DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
-
Morgenstern B. DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 1999;15:211-218.
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
47
-
-
0031856336
-
MView: A web-compatible database search or multiple alignment viewer
-
Brown NP, Leroy C, Sander C. MView: a web-compatible database search or multiple alignment viewer. Bioinformatics 1998;14:380-381.
-
(1998)
Bioinformatics
, vol.14
, pp. 380-381
-
-
Brown, N.P.1
Leroy, C.2
Sander, C.3
-
48
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002;30:3059-3066.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
49
-
-
0034567324
-
Discovering patterns conserved in sets of unaligned protein sequences
-
Jonassen I. Discovering patterns conserved in sets of unaligned protein sequences. Methods Mol Biol 2000;143:33-52.
-
(2000)
Methods Mol Biol
, vol.143
, pp. 33-52
-
-
Jonassen, I.1
-
50
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
51
-
-
0004342789
-
The human ATP-binding cassette (ABC) transporter superfamily
-
Dean M. The human ATP-binding cassette (ABC) transporter superfamily. NCBI Bookshelf 2002. Retrieved from http://www.ncbi.nlm.nih.gov/entrez/query.
-
(2002)
NCBI Bookshelf
-
-
Dean, M.1
-
52
-
-
0037203341
-
Transbilayer phospholipid movement and the clearance of apoptotic cells
-
Williamson P, Schlegel RA. Transbilayer phospholipid movement and the clearance of apoptotic cells. Biochim Biophys Acta 2002;1585:53-63.
-
(2002)
Biochim Biophys Acta
, vol.1585
, pp. 53-63
-
-
Williamson, P.1
Schlegel, R.A.2
-
53
-
-
0034007737
-
Transport function and hepatocellular localization of mrp6 in rat liver
-
Madon J, Hagenbuch B, Landmann L, Meier PJ, Stieger B. Transport function and hepatocellular localization of mrp6 in rat liver. Mol Pharmacol 2000;57:634-641.
-
(2000)
Mol Pharmacol
, vol.57
, pp. 634-641
-
-
Madon, J.1
Hagenbuch, B.2
Landmann, L.3
Meier, P.J.4
Stieger, B.5
-
54
-
-
17744385964
-
The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement
-
Gaedeke N, Klein M, Kolukisaoglu U, Forestier C, Müller A, Ansorge M, Becker D, Mamnun Y, Kuchler K, Schulz B, Mueller-Roeber B, Martinoia E. The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement. EMBO J 2001;20:1875-1887.
-
(2001)
EMBO J
, vol.20
, pp. 1875-1887
-
-
Gaedeke, N.1
Klein, M.2
Kolukisaoglu, U.3
Forestier, C.4
Müller, A.5
Ansorge, M.6
Becker, D.7
Mamnun, Y.8
Kuchler, K.9
Schulz, B.10
Mueller-Roeber, B.11
Martinoia, E.12
-
55
-
-
0842285647
-
Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance
-
Lee EK, Kwon M, Ko JH, Yi H, Hwang MG, Chang S, Cho MH. Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance. Plant Physiol 2004;134:528-538.
-
(2004)
Plant Physiol
, vol.134
, pp. 528-538
-
-
Lee, E.K.1
Kwon, M.2
Ko, J.H.3
Yi, H.4
Hwang, M.G.5
Chang, S.6
Cho, M.H.7
-
56
-
-
0142246629
-
Differential sensitivity of plant and yeast MRP(ABCC)-mediated organic anion transport processes towards sulfonylureas
-
Forestier C, Frangne N, Eggmann T, Klein M. Differential sensitivity of plant and yeast MRP(ABCC)-mediated organic anion transport processes towards sulfonylureas. FEBS Lett 2003;554:23-29.
-
(2003)
FEBS Lett
, vol.554
, pp. 23-29
-
-
Forestier, C.1
Frangne, N.2
Eggmann, T.3
Klein, M.4
-
58
-
-
0035936144
-
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
-
Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, Delbac F, El Alaoui H, Peyret P, Saurin W, Gouy M, Weissenbach J, Vivares CP. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 2001;414:450-453.
-
(2001)
Nature
, vol.414
, pp. 450-453
-
-
Katinka, M.D.1
Duprat, S.2
Cornillot, E.3
Metenier, G.4
Thomarat, F.5
Prensier, G.6
Barbe, V.7
Peyretaillade, E.8
Brottier, P.9
Wincker, P.10
Delbac, F.11
El Alaoui, H.12
Peyret, P.13
Saurin, W.14
Gouy, M.15
Weissenbach, J.16
Vivares, C.P.17
-
59
-
-
0029853148
-
WWW-query: An on-line retrieval system for biological sequence banks
-
Perrière G, Gouy M. WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 1996;78:364-369.
-
(1996)
Biochimie
, vol.78
, pp. 364-369
-
-
Perrière, G.1
Gouy, M.2
-
60
-
-
0029076509
-
Cloning and characterization of a RNAse L inhibitor: A new component of the interferon-regulated 2-5A pathway
-
Bisbal C, Martinand C, Silhol M, Lebleu B, Salehzada T. Cloning and characterization of a RNAse L inhibitor: a new component of the interferon-regulated 2-5A pathway. J Biol Chem 1995;270:13308-13317.
-
(1995)
J Biol Chem
, vol.270
, pp. 13308-13317
-
-
Bisbal, C.1
Martinand, C.2
Silhol, M.3
Lebleu, B.4
Salehzada, T.5
-
61
-
-
0002369788
-
Did eukaryotes originate by a fusion event?
-
1989
-
Zillig W, Klenk HP, Palm P, Leffers H, Pühler G, Gropp F, Garrett RA. 1989. Did eukaryotes originate by a fusion event? Endocytobiosis Cell Res 1989;6:1-25.
-
(1989)
Endocytobiosis Cell Res
, vol.6
, pp. 1-25
-
-
Zillig, W.1
Klenk, H.P.2
Palm, P.3
Leffers, H.4
Pühler, G.5
Gropp, F.6
Garrett, R.A.7
-
62
-
-
0035839555
-
The Arabidopsis thaliana ABC protein superfamily, a complete inventory
-
Sanchez-Fernandez R, Davies TG, Coleman JO, Rea PA. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. J Biol Chem 2001;276:30231-30244.
-
(2001)
J Biol Chem
, vol.276
, pp. 30231-30244
-
-
Sanchez-Fernandez, R.1
Davies, T.G.2
Coleman, J.O.3
Rea, P.A.4
-
63
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000;25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
64
-
-
0036796731
-
A computational strategy for protein function assignment which addresses the multidomain problem
-
Pérez AJ, Rodríguez A, Trelles O, Thode G. A computational strategy for protein function assignment which addresses the multidomain problem. Comp Funct Gen 2002;3:423-440.
-
(2002)
Comp Funct Gen
, vol.3
, pp. 423-440
-
-
Pérez, A.J.1
Rodríguez, A.2
Trelles, O.3
Thode, G.4
-
65
-
-
0036463896
-
Macrophage Function and Stability of Atherosclerotic Plaque Consortium: Macrophage function and stability of the atherosclerotic plaque: Progress report of a European project
-
Bellosta S, Bernini F, Chinetti G, Cignarella A, Cullen P, von Eckardstein A, Exley A, Freeth J, Goddard M, Hofker M, Kanters E, Kovanen P, Lorkowski S, Pentikainen M, Printen J, Rauterberg J, Ritchie A, Staels B, Weitkamp B, de Winther M. Macrophage Function and Stability of Atherosclerotic Plaque Consortium: Macrophage function and stability of the atherosclerotic plaque: progress report of a European project. Nutr Metab Cardiovasc Dis 2002;12:3-11.
-
(2002)
Nutr Metab Cardiovasc Dis
, vol.12
, pp. 3-11
-
-
Bellosta, S.1
Bernini, F.2
Chinetti, G.3
Cignarella, A.4
Cullen, P.5
Von Eckardstein, A.6
Exley, A.7
Freeth, J.8
Goddard, M.9
Hofker, M.10
Kanters, E.11
Kovanen, P.12
Lorkowski, S.13
Pentikainen, M.14
Printen, J.15
Rauterberg, J.16
Ritchie, A.17
Staels, B.18
Weitkamp, B.19
De Winther, M.20
more..
|