MView: A web-compatible database search or multiple alignment viewer

Bioinformatics

Volumn 14, Issue 4, 1998, Pages 380-381

  Brown, Nigel P ^a   Leroy, Christophe ^a   Sander, Chris ^a  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA BASE; INFORMATION RETRIEVAL; INTERNET; PRIORITY JOURNAL;

EID: 0031856336     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.4.380     Document Type: Article

References (14)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E, W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Altschul, S.F., Madden, T.L., Schaeffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
3. Andrade, M., Brown, N.P., Leroy, C., Hoersch, S., Reich, C., Franchini, A., de Daruvar, A., Tamames, J., Valencia, A., Ouzounis, C. and Sander, C. (1998) "GeneQuiz: Automated genome sequence analysis and annotation". (manuscript in preparation). http://www.sander.e-bi.ac.uk.genequiz/.
4. Attwood, T., Payne, A.W.R., Michie, A.D. and Parry-Smith, D.J. (1997) A Colour INteractive Editor for Multiple Alignments - CINEMA. EMBnet.news, 3(3). http://www2.ebi.ac.uk/embnet/news/.
5. Bork, P., Brown, N.P., Hegyi, H. and Schultz, J. (1996) The protein phosphatase 2C (PP2C) superfamily: Detection of bacterial homologues. Protein Sci., 5, 1421-1425.
6. Etzold, T., Ulyanov, A. and Argos, P. (1996) SRS: information retrieval system for molecular biology data banks. Methods Enzymol., 266, 114-128.
7. Hofmann, K. and Baron, M.D. (1992) BOXSHADE. ISREC, Switzerland; Institute for Animal Health, U.K. http://ulrec3.unil.ch/software/BOX_form.html.
8. Lopez, R. (1997) Fasta3 and blast service at the EBI. EMBnet.news, 4(1). http://www2.ebi.ac.uk/embnet/news/.
9. Pearson,W.R. (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol., 183, 63-98.
10. Scharf, M., Schneider, R., Casari, G., Bork, P., Valencia, A., Ouzounis, C. and Sander, C. (1994) GeneQuiz: a workbench for sequence analysis. In Altman, R., Brutlag, D., Karp, P., Lathrop, R. and Searls, D. (eds), Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA, pp. 348-353.
11. Sonnhammer, E. (1995) Belvu - a multiple alignment viewer. Sanger Centre, UK. http://www.sanger.ac.uk/~esr/Belvu.html.
12. Taylor, W.R. (1986) The classification of amino acid conservation. J. Theor.Biol., 119, 205-218.
13. Wall, L., Christiansen, T. and Schwartz, R.L. (1996) Programming Perl, 2nd edn. Nutshell Handbooks, O'Reilly & Associates, Inc., Sebastopol, CA, USA.
14. Worley, K.C., Wiese, B.A. and Smith, R.F. (1996) BEAUTY: An enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res., 5, 173-184.