Organization of polyhydroxyalkanoate synthase for in vitro polymerization as revealed by atomic force microscopy

Macromolecular Bioscience

Volumn 5, Issue 10, 2005, Pages 929-935

  Kikkawa, Yoshihiro ^a,b   Narike, Masaharu ^c   Hiraishi, Tomohiro ^b   Kanesato, Masatoshi ^a   Sudesh, Kumar ^d   Doi, Yoshiharu ^b   Tsuge, Takeharu ^c  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^b RIKEN   (Japan)

^c TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^d SCHOOL OF PHYSICS   (Malaysia)

Author keywords

Atomic force microscopy (AFM); Enzymes; In vitro polymerization; PHA synthase; Polyhydroxyalcanoate (PHA)

Indexed keywords

ATOMIC FORCE MICROSCOPY; GRAPHITE; MONOMERS; OPTICAL RESOLVING POWER; POLYMERIZATION;

IN VITRO POLYMERIZATION; PHA SYNTHASE; POLYHYDROXYALCANOATE (PHA);

ENZYMES;

3 HYDROXYBUTYRYL COENZYME A; COENZYME A; GRAPHITE; MONOMER; POLY(3 HYDROXYBUTYRIC ACID); POLYHYDROXYALKANOATE SYNTHASE; UNCLASSIFIED DRUG;

ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMICAL STRUCTURE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERIZATION; WAUTERSIA EUTROPHA;

ACYLTRANSFERASES; CROSS-LINKING REAGENTS; CUPRIAVIDUS NECATOR; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GLUTARAL; MICROSCOPY, ATOMIC FORCE; POLYMERS; SOLUTIONS; WATER;

WAUTERSIA EUTROPHA;

EID: 27544449176     PISSN: 16165187     EISSN: None     Source Type: Journal    
DOI: 10.1002/mabi.200500115     Document Type: Article

References (48)

1. [1a] P. A. Holmes, "Biologically produced (R)-3-hydroxyalkanoate polymers and copolymers", in: Developments in Crystalline Polymers, Vol. 2, D. C. Bassett, Ed., Elsevier Applied Science, London and New York 1988, p. 1;
2. [1b] A. J. Anderson, E. A. Dawes, Microbiol. Rev. 1990, 54, 450;
3. [1c] Y. Doi, "Microbial Polyesters", VCH Publishers, New York 1990;
4. [1d] K. Sudesh, H. Abe, Y. Doi, Prog. Polym. Sci. 2000, 25, 1503;
5. [1e] R. W. Lenz, R. H. Marchessault, Biomacromolecules 2005, 6, 1.
6. [2a] D. Ellar, D. G. Lundgren, K. Okamura, R. H. Marchessault, J. Mol. Biol. 1968, 35, 489;
7. [2b] R. C. Fuller, Int. J. Biol. Macromolecules 1999, 25, 21.
8. [3a] J. Stubbe, J. Tian, Natl. Prod. Rep. 2003, 20, 445;
9. [3b] B. H. A. Rehm, Biochem. J. 2003, 376, 15;
10. [3c] A. Steinbüchel, T. Lütke-Eversloh, Biochem. Eng. J. 2003, 16, 81.
11. T. U. Gerngross, D. P. Martin, Proc. Natl. Acad. Sci. USA 1995, 92, 6279.
12. S. Zhang, T. Yasuo, R. W. Lenz, S. Goodwin, Biomacromolecules 2000, 1, 244.
13. S. Zhang, S. Kolvek, S. Goodwin, R. W. Lenz, Biomacromolecules 2004, 5, 40.
14. M. Liebergesell, K. Sonomoto, M. Madkour, F. Mayer, A. Steinbüchel, Eur. J. Biochem. 1994, 226, 71.
15. G. A. R. Nobes, L. Jurasek, R. H. Marchessault, D. P. Martin, J. L. Mutaux, H. Chanzy, Macromol. Rapid Commun. 2000, 21, 77.
16. [9a] L. Jurasek, G. A. R. Nobes, R. H. Marchessault, Macromol. Biosci. 2001, 1, 258;
17. [9b] L. Jurasek, R. H. Marchessault, Biomacromolecules 2002, 3, 256.
18. T. Hiraishi, Y. Kikkawa, M. Fujita, Y. M. Normi, M. Kanesato, T. Tsuge, K. Sudesh, Y. Doi, Biomacromolecules 2005, 6, 2671.
19. See for example, [11a] H. G. Hansma, J. Vesenka, C. Siegerist, G. Kelderman, H. Morrett, R. L. Sinsheimer, V. Elings, C. Bustamante, P. K. Hansma, Science 1992, 256, 1180;
20. [11b] S. S. Sheiko, M. Möller, Chem. Rev. 2001, 101, 4099.
21. [12a] J. Kumaki, Y. Nishikawa, T. Hashimoto, J. Am. Chem. Soc. 1996, 118, 3321;
22. [12b] J. Kumaki, T. Hashimoto, J. Am. Chem. Soc. 2003, 125, 4907;
23. [12c] T. Hashimoto, A. Okumura, D. Tanabe, Macromolecules 2003, 36, 7324.
24. [12d] V. V. Prokhorov, K. Nitta, M. Terano, Macromol. Chem. Phys. 2003, 205, 179.
25. [13a] S. Sheiko, M. da Silva, D. Shirvaniants, I. LaRue, S. Prokhorova, M. Moeller, K. Beers, K. Matyjaszewski, J. Am. Chem. Soc. 2003, 125, 6725;
26. [13b] K. Matyjaszewski, S. Qin, J. R. Boyce, D. Shirvanyants, S. S. Sheiko, Macromolecules 2003, 36, 1843;
27. [13c] M. O. Gallymov, B. Tartsch, A. R. Khokhlov, S. S. Sheiko, H. G. Borner, K. Matyjaszewski, M. Möller, Chem. Eur. J. 2004, 10, 4599.
28. [14a] S. A. Prokhorova, S. S. Sheiko, M. Möller, C. H. Ahn, V. Percec, Macromol. Rapid Commun. 1998, 19, 359;
29. [14b] S. Prokhorova, S. S. Sheiko, A. Mourran, R. Azumi, U. Beginn, G. Zipp, C. H. Ahn, M. N. Holerca, V. Percec, M. Möller, Langmuir 2000, 16, 6862;
30. [14c] C. Ecker, N. Severin, L. Shu, A. D. Schlüter, J. P. Rabe, Macromolecules 2004, 37, 2484.
31. [15a] G. Gorodyska, A. Kiriy, S. Minko, C. Tsitsilianis, M. Stamm, Nano Lett. 2003, 3, 365;
32. [15b] A. Kiriy, G. Gorodyska, S. Minko, M. Stamm, C. Tsitsilianis, Macromolecules 2003, 36, 8704;
33. [15c] L. Xue, U. S. Agarwal, M. Zhang, B. B. P. Staal, A. H. E. Müller, C. M. E. Bailly, P. J. Lemstra, Macromolecules 2005, 38, 2093.
34. P. Schubert, A. Steinbüchel, H. G. Schlegel, J. Bacteriol. 1988, 170, 5837.
35. M. Chatterjee, D. K. Mandal, Biochemistry 2003, 42, 12217.
36. [18a] J. Vesenka, S. Manne, R. Giberson, T. Marsh, E. Henderson, Biophys. J. 1993, 65, 992;
37. [18b] P. Markiewicz, M. C. Goh, Langmuir 1994, 10, 5;
38. [18c] A. Engel, C.-A. Schoenenberger, D. J. Müller, Curr. Opin. Struc. Biol. 1997, 7, 279;
39. [18d] N. C. Santos, E. Ter-Ovanesyan, J. A. Zasadzinski, M. Prieto, M. A. R. B. Castanho, Biophys. J. 1998, 75, 1869;
40. [18e] Y. Kikkawa, M. Fujita, T. Hiraishi, M. Yoshimoto, Y. Doi, Biomacromolecules 2004, 5, 1642.
41. Protein Solutions Inc., "Operator's Manual of Dynamic Light Scattering Molecular Size Detectors (DynaPro-801 WIN and DynaPro-801TC)".
42. [2a] H. Nakao, H. Hayashi, T. Yoshino, S. Sugiyama, K. Otobe, T. Ohtani, Nano Lett. 2002, 2, 475;
43. [20b] H. Nakao, M. Gad, S. Sugiyama, K. Otobe, T. Ohtani, J. Am. Chem. Soc. 2003, 125, 475.
44. [21a] M. E. Soderquist, G. Wlton, J. Colloid Interface Sci. 1980, 75, 386;
45. [21b] A. Kondo, J. Mihara, J. Colloid Interface Sci. 1996, 177, 214;
46. [21c] J. Buijs, V. Hlady, J. Colloid Interface Sci. 1997, 190, 171;
47. [21d] M. C. L. Maste, W. Norde, A. J. W. G. Visser, J. Colloid Interface Sci. 1997, 196, 224;
48. [21e] T. C. Ta, M. T. Sykes, M. T. McDermott, Langmuir 1998, 14, 2435.