-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0025350086
-
An investigation of oligopeptides linking domains in protein tertiary structures and possible candidates for general gene fusion
-
Argos, P. (1990) An investigation of oligopeptides linking domains in protein tertiary structures and possible candidates for general gene fusion. J Mol Biol 211: 943-958.
-
(1990)
J Mol Biol
, vol.211
, pp. 943-958
-
-
Argos, P.1
-
3
-
-
0030972952
-
H-NS: A modulator of environmentally regulated gene expression
-
Atlung, T., and Ingmer, H. (1997) H-NS: a modulator of environmentally regulated gene expression. Mol Microbiol 24: 7-17.
-
(1997)
Mol Microbiol
, vol.24
, pp. 7-17
-
-
Atlung, T.1
Ingmer, H.2
-
4
-
-
0028151689
-
Characterization of a light-responding trans-activator responsible for differentially controlling reaction center and light-harvesting-I gene expression in Rhodobacter capsulatus
-
Buggy, J.J., Sganga, M.W., and Bauer, C.E. (1994) Characterization of a light-responding trans-activator responsible for differentially controlling reaction center and light-harvesting-I gene expression in Rhodobacter capsulatus. J Bacteriol 176: 6936-6943.
-
(1994)
J Bacteriol
, vol.176
, pp. 6936-6943
-
-
Buggy, J.J.1
Sganga, M.W.2
Bauer, C.E.3
-
5
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
Bult, C.J., White, O., Olsen, G.J., Zhou, L., Fleischmann, R.D., Sutton, G.G., et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273: 1058-1073.
-
(1996)
Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
Sutton, G.G.6
-
6
-
-
0028276865
-
E. coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones
-
Coetzee, T., Herschlag, D., and Belfort, M. (1994) E. coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones. Genes Dev 8: 1575-1588.
-
(1994)
Genes Dev
, vol.8
, pp. 1575-1588
-
-
Coetzee, T.1
Herschlag, D.2
Belfort, M.3
-
7
-
-
0031556945
-
Two-domain structure of the td intron-encoded endonuclease I-Tevl correlates with the two-domain configuration of the homing site
-
Derbyshire, V., Kowalski, J.C., Dansereau, J.T., Hauer, C.R., and Belfort, M. (1997) Two-domain structure of the td intron-encoded endonuclease I-Tevl correlates with the two-domain configuration of the homing site. J Mol Biol 265: 494-506.
-
(1997)
J Mol Biol
, vol.265
, pp. 494-506
-
-
Derbyshire, V.1
Kowalski, J.C.2
Dansereau, J.T.3
Hauer, C.R.4
Belfort, M.5
-
8
-
-
0027258405
-
Synthesis of the Escherichia coli K-12 nucleoid-associated DNA-binding protein H-NS is subjected to growth-phase control and autoregulation
-
Dersch, P., Schmidt, K., and Bremer, E. (1993) Synthesis of the Escherichia coli K-12 nucleoid-associated DNA-binding protein H-NS is subjected to growth-phase control and autoregulation. Mol Microbiol 8: 875-889.
-
(1993)
Mol Microbiol
, vol.8
, pp. 875-889
-
-
Dersch, P.1
Schmidt, K.2
Bremer, E.3
-
9
-
-
0021760092
-
A comprehensive set of sequence analysis programs for the VAX
-
Devereux, J., Haeberli, P., and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 387-395
-
-
Devereux, J.1
Haeberli, P.2
Smithies, O.3
-
10
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
-
11
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser, C.M., Gocayne, J.D., White, O., Adams, M.D., Clayton, R.A., Fleischmann, R.D., et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science 270: 397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
Fleischmann, R.D.6
-
12
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
Fraser, C.M., Casjens, S., Huang, W.M., Sutton, G.G., Clayton, R., Lathigra, R., et al. (1997) Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature 390: 580-586.
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
Sutton, G.G.4
Clayton, R.5
Lathigra, R.6
-
13
-
-
0031035206
-
The Escherichia coli stpA gene is transiently expressed during growth in rich medium and is induced in minimal medium and by stress conditions
-
Free, A., and Dorman, C.J. (1997) The Escherichia coli stpA gene is transiently expressed during growth in rich medium and is induced in minimal medium and by stress conditions. J Bacteriol 179: 909-918.
-
(1997)
J Bacteriol
, vol.179
, pp. 909-918
-
-
Free, A.1
Dorman, C.J.2
-
14
-
-
0031882335
-
The StpA protein functions as a molecular adapter to mediate repression of the bgl operon by truncated H-NS in Escherichia coli
-
Free, A., Williams, R.M., and Dorman, C.J. (1998) The StpA protein functions as a molecular adapter to mediate repression of the bgl operon by truncated H-NS in Escherichia coli. J Bacteriol 180: 994-997.
-
(1998)
J Bacteriol
, vol.180
, pp. 994-997
-
-
Free, A.1
Williams, R.M.2
Dorman, C.J.3
-
15
-
-
0030916257
-
Characterization of BpH3, an H-NS-like protein in Bordetella pertussis
-
Goyard, S., and Bertin, P. (1997) Characterization of BpH3, an H-NS-like protein in Bordetella pertussis. Mol Microbiol 24: 815-823.
-
(1997)
Mol Microbiol
, vol.24
, pp. 815-823
-
-
Goyard, S.1
Bertin, P.2
-
16
-
-
0029163563
-
RNA chaperones and the RNA folding problem
-
Herschlag, D. (1995) RNA chaperones and the RNA folding problem. J Biol Chem 270: 20871-20874.
-
(1995)
J Biol Chem
, vol.270
, pp. 20871-20874
-
-
Herschlag, D.1
-
17
-
-
10544255079
-
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
-
Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.C., and Herrmann, R. (1996) Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 24: 4420-4449.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 4420-4449
-
-
Himmelreich, R.1
Hilbert, H.2
Plagens, H.3
Pirkl, E.4
Li, B.C.5
Herrmann, R.6
-
19
-
-
0025135253
-
Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria
-
Hulton, C.S., Seirafi, A., Hinton, J.C., Sidebotham, J.M., Waddell, L., Pavitt, G.D., et al. (1990) Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria. Cell 63: 631-642.
-
(1990)
Cell
, vol.63
, pp. 631-642
-
-
Hulton, C.S.1
Seirafi, A.2
Hinton, J.C.3
Sidebotham, J.M.4
Waddell, L.5
Pavitt, G.D.6
-
20
-
-
0030838710
-
p53-mediated DNA renaturation can mimic strand exchange
-
Jean, D., Gendron, D., Delbecchi, L., and Bourgaux, P. (1997), p53-mediated DNA renaturation can mimic strand exchange. Nucleic Acids Res 25: 4004-4012.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4004-4012
-
-
Jean, D.1
Gendron, D.2
Delbecchi, L.3
Bourgaux, P.4
-
21
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., et al. (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res 3: 109-136.
-
(1996)
DNA Res
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
Sato, S.2
Kotani, H.3
Tanaka, A.4
Asamizu, E.5
Nakamura, Y.6
-
22
-
-
0031458333
-
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
-
Klenk, H.P., Clayton, R.A., Tomb, J.F., White, O., Nelson, K.E., Ketchum, K.A., et al. (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390: 364-370.
-
(1997)
Nature
, vol.390
, pp. 364-370
-
-
Klenk, H.P.1
Clayton, R.A.2
Tomb, J.F.3
White, O.4
Nelson, K.E.5
Ketchum, K.A.6
-
23
-
-
0030731108
-
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
-
Kunst, F., Ogasaware, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., et al. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390: 249-256.
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasaware, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
-
24
-
-
0024494989
-
Characterization of the structural genes for the DNA-binding protein H-NS in enterobacteriaceae
-
La Teana, A., Falconi, M., Scarlato, V., Lammi, M., and Pon, C.L. (1989) Characterization of the structural genes for the DNA-binding protein H-NS in enterobacteriaceae. FEBS Lett 244: 34-38.
-
(1989)
FEBS Lett
, vol.244
, pp. 34-38
-
-
La Teana, A.1
Falconi, M.2
Scarlato, V.3
Lammi, M.4
Pon, C.L.5
-
25
-
-
0029772571
-
Genes encoding the pKM101 conjugal mating pore are negatively regulated by the plasmid-encoded KorA and KorB proteins
-
Moré, M.I., Puhlman, R.F., and Winans, S.C. (1996) Genes encoding the pKM101 conjugal mating pore are negatively regulated by the plasmid-encoded KorA and KorB proteins. J Bacteriol 178: 4392-4399.
-
(1996)
J Bacteriol
, vol.178
, pp. 4392-4399
-
-
Moré, M.I.1
Puhlman, R.F.2
Winans, S.C.3
-
26
-
-
0028235112
-
Colicin 24, a new plasmid-borne colicin from a uropathogenic strain of Escherichia coli
-
O'Brien, G.J., and Mahanty, H.K. (1994) Colicin 24, a new plasmid-borne colicin from a uropathogenic strain of Escherichia coli. Plasmid 31: 288-296.
-
(1994)
Plasmid
, vol.31
, pp. 288-296
-
-
O'Brien, G.J.1
Mahanty, H.K.2
-
27
-
-
0023937157
-
Identification, cloning, nucleotide sequence and chromosomal map location of hns, the structural gene for Escherichia coli DNA-binding protein H-NS
-
Pon, C.L., Calogero, R.A., and Gualerzi, C.O. (1988) Identification, cloning, nucleotide sequence and chromosomal map location of hns, the structural gene for Escherichia coli DNA-binding protein H-NS. Mol Gen Genet 212: 199-202.
-
(1988)
Mol Gen Genet
, vol.212
, pp. 199-202
-
-
Pon, C.L.1
Calogero, R.A.2
Gualerzi, C.O.3
-
28
-
-
0027999823
-
Plasmids bearing hfq and the hns-like gene stpA complement hns mutants in modulating arginine decarboxylase gene expression in Escherichia coli
-
Shi, X., and Bennett, G.N. (1994) Plasmids bearing hfq and the hns-like gene stpA complement hns mutants in modulating arginine decarboxylase gene expression in Escherichia coli. J Bacteriol 176: 6769-6775.
-
(1994)
J Bacteriol
, vol.176
, pp. 6769-6775
-
-
Shi, X.1
Bennett, G.N.2
-
29
-
-
0030174976
-
A transcription factor with a leucine-zipper motif involved in light-dependent inhibition of expression of the puf operon in the photosynthetic bacterium Rhodobacter sphaeroides
-
Shimada, H., Wada, T., Handa, H., Ohta, H., Mizoguchi, H., Nishimura, K., et al. (1996) A transcription factor with a leucine-zipper motif involved in light-dependent inhibition of expression of the puf operon in the photosynthetic bacterium Rhodobacter sphaeroides. Plant Cell Physiol 37: 515-522.
-
(1996)
Plant Cell Physiol
, vol.37
, pp. 515-522
-
-
Shimada, H.1
Wada, T.2
Handa, H.3
Ohta, H.4
Mizoguchi, H.5
Nishimura, K.6
-
30
-
-
0028900971
-
Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli
-
Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., et al. (1995) Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett 360: 125-131.
-
(1995)
FEBS Lett
, vol.360
, pp. 125-131
-
-
Shindo, H.1
Iwaki, T.2
Ieda, R.3
Kurumizaka, H.4
Ueguchi, C.5
Mizuno, T.6
-
31
-
-
15644383855
-
Complete genome sequence of Methanobacterium thermoautotrophicum H: Functional analysis and comparative genomics
-
Smith, D.R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum H: functional analysis and comparative genomics. J Bacteriol 179: 7135-7155.
-
(1997)
J Bacteriol
, vol.179
, pp. 7135-7155
-
-
Smith, D.R.1
Doucette-Stamm, L.A.2
Deloughery, C.3
Lee, H.4
Dubois, J.5
Aldredge, T.6
-
32
-
-
0029812469
-
Coordinated and differential expression of histone-like proteins in Escherichia coli: Regulation and function of the H-NS analog StpA
-
Sonden, B., and Uhlin, B.E. (1996) Coordinated and differential expression of histone-like proteins in Escherichia coli: regulation and function of the H-NS analog StpA. EMBO J 15: 4970-4980.
-
(1996)
EMBO J
, vol.15
, pp. 4970-4980
-
-
Sonden, B.1
Uhlin, B.E.2
-
33
-
-
0021760528
-
Hla, an E. coli DNA-binding protein which accumulates in stationary phase, strongly compacts DNA in vitro
-
Spassky, A., Rimsky, S., Garreau, H., and Buc, H. (1984) Hla, an E. coli DNA-binding protein which accumulates in stationary phase, strongly compacts DNA in vitro. Nucleic Acids Res 12: 5321-5340.
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 5321-5340
-
-
Spassky, A.1
Rimsky, S.2
Garreau, H.3
Buc, H.4
-
34
-
-
0030976054
-
The oligomeric structure of nucleoid protein H-NS is necessary for recognition of intrinsically curved DNA and for DNA bending
-
Spurio, R., Falconi, M., Brandi, A., Pon, C.L., and Gualerzi, C.O. (1997) The oligomeric structure of nucleoid protein H-NS is necessary for recognition of intrinsically curved DNA and for DNA bending. EMBO J 16: 795-1805.
-
(1997)
EMBO J
, vol.16
, pp. 795-1805
-
-
Spurio, R.1
Falconi, M.2
Brandi, A.3
Pon, C.L.4
Gualerzi, C.O.5
-
35
-
-
0025283867
-
Use of T7 RNA polymerase to direct expression of cloned genes
-
Studier, F.W., Rosenberg, A.H., Dunn, J.J., and Dubendorff, J.W. (1990) Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185: 60-89.
-
(1990)
Methods Enzymol
, vol.185
, pp. 60-89
-
-
Studier, F.W.1
Rosenberg, A.H.2
Dunn, J.J.3
Dubendorff, J.W.4
-
36
-
-
0028139555
-
Temperature-dependent expression of conjugation pili by IncM plasmid-harbouring bacteria: Identification of plasmid-encoded regulatory functions
-
Tietze, E., and Tschäpe, H. (1994) Temperature-dependent expression of conjugation pili by IncM plasmid-harbouring bacteria: identification of plasmid-encoded regulatory functions. Basic Microbiol 34: 105-116.
-
(1994)
Basic Microbiol
, vol.34
, pp. 105-116
-
-
Tietze, E.1
Tschäpe, H.2
-
37
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
Tomb, J.F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G., Fleischmann, R.D., et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539-547.
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.F.1
White, O.2
Kerlavage, A.R.3
Clayton, R.A.4
Sutton, G.G.5
Fleischmann, R.D.6
-
38
-
-
0030601826
-
Systematic mutational analysis revealing the functional domain organization of Escherichia coli nucleoid protein H-NS
-
Ueguchi, C., Suzuki, T., Yoshida, T., Tanaka, K., and Mizuno, T. (1996) Systematic mutational analysis revealing the functional domain organization of Escherichia coli nucleoid protein H-NS. J Mol Biol 263: 149-162.
-
(1996)
J Mol Biol
, vol.263
, pp. 149-162
-
-
Ueguchi, C.1
Suzuki, T.2
Yoshida, T.3
Tanaka, K.4
Mizuno, T.5
-
39
-
-
0030663474
-
Clarification of the dimerization domain and its functional significance for the Escherichia coli nucleoid protein H-NS
-
Ueguchi, C., Seto, C., Suzuki, T., and Mizuno, T. (1997) Clarification of the dimerization domain and its functional significance for the Escherichia coli nucleoid protein H-NS. J Mol Biol 274: 145-151.
-
(1997)
J Mol Biol
, vol.274
, pp. 145-151
-
-
Ueguchi, C.1
Seto, C.2
Suzuki, T.3
Mizuno, T.4
-
40
-
-
0028598711
-
The chromatin-associated protein H-NS
-
Ussery, D.W., Hinton, J.C., Jordi, B.J., Granum, P.E., Seirafi, A., Stephen, R.J., et al. (1994) The chromatin-associated protein H-NS. Biochemie 76: 968-980.
-
(1994)
Biochemie
, vol.76
, pp. 968-980
-
-
Ussery, D.W.1
Hinton, J.C.2
Jordi, B.J.3
Granum, P.E.4
Seirafi, A.5
Stephen, R.J.6
-
41
-
-
0031573039
-
Molecular aspects of the E. coli nucleoid protein H-NS: A central controller of gene regulatory networks
-
Williams, R.M., and Rimsky, S. (1997) Molecular aspects of the E. coli nucleoid protein H-NS: a central controller of gene regulatory networks. FEMS Microbiol Lett 156: 175-185.
-
(1997)
FEMS Microbiol Lett
, vol.156
, pp. 175-185
-
-
Williams, R.M.1
Rimsky, S.2
-
42
-
-
0029785418
-
Probing the structure, function, and interactions of the Escherichia coli H-NS and StpA proteins by using dominant negative derivatives
-
Williams, R.M., Rimsky, S., and Buc, H. (1996) Probing the structure, function, and interactions of the Escherichia coli H-NS and StpA proteins by using dominant negative derivatives. J Bacteriol 178: 4335-4343.
-
(1996)
J Bacteriol
, vol.178
, pp. 4335-4343
-
-
Williams, R.M.1
Rimsky, S.2
Buc, H.3
-
44
-
-
0027073133
-
Nucleotide sequence of a newly identified Escherichia coli gene, stpA, encoding an H-NS-like protein
-
Zhang, A., and Belfort, M. (1992) Nucleotide sequence of a newly identified Escherichia coli gene, stpA, encoding an H-NS-like protein. Nucleic Acids Res 20: 6735.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 6735
-
-
Zhang, A.1
Belfort, M.2
-
45
-
-
0029384106
-
Escherichia coli protein StpA stimulates self-splicing by promoting RNA assembly in vitro
-
Zhang, A., Derbyshire, V., Galloway Salvo, J.L., and Belfort, M. (1995) Escherichia coli protein StpA stimulates self-splicing by promoting RNA assembly in vitro. RNA 1: 783-793.
-
(1995)
RNA
, vol.1
, pp. 783-793
-
-
Zhang, A.1
Derbyshire, V.2
Galloway Salvo, J.L.3
Belfort, M.4
-
46
-
-
0029913710
-
Escherichia coli protein analogs StpA and H-NS: Regulatory networks, similar and disparate effects on nucleic acid dynamics
-
Zhang, A., Rimsky, S., Buc, H., and Belfort, M. (1996) Escherichia coli protein analogs StpA and H-NS: regulatory networks, similar and disparate effects on nucleic acid dynamics. EMBO J 15: 1340-1349.
-
(1996)
EMBO J
, vol.15
, pp. 1340-1349
-
-
Zhang, A.1
Rimsky, S.2
Buc, H.3
Belfort, M.4
|