-
1
-
-
0042768158
-
Genomewide insertional mutagenesis of Arabidopsis thaliana
-
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen HM, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, et al (2003) Genomewide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657
-
(2003)
Science
, vol.301
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.M.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
3
-
-
0022998836
-
Purification, substrate specificity, and classification of tripeptidyl peptidase II
-
Balow R, Tomkinson B, Ragnarsson U, Zetterqvist O (1986) Purification, substrate specificity, and classification of tripeptidyl peptidase II. J Biol Chem 261: 2409-2417
-
(1986)
J Biol Chem
, vol.261
, pp. 2409-2417
-
-
Balow, R.1
Tomkinson, B.2
Ragnarsson, U.3
Zetterqvist, O.4
-
4
-
-
0028814328
-
Regulation of protein degradation
-
Callis J (1995) Regulation of protein degradation. Plant Cell 7: 845-857
-
(1995)
Plant Cell
, vol.7
, pp. 845-857
-
-
Callis, J.1
-
5
-
-
0037351682
-
Schizosaccharomyces pombe essential genes: A pilot study
-
Decottignies A, Sanchez-Perez I, Nurse P (2003) Schizosaccharomyces pombe essential genes: a pilot study. Genome Res 13: 399-406
-
(2003)
Genome Res
, vol.13
, pp. 399-406
-
-
Decottignies, A.1
Sanchez-Perez, I.2
Nurse, P.3
-
6
-
-
0141567486
-
The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development
-
Downes B, Stupar R, Gingerich D, Vierstra R (2003) The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. Plant J 35: 729-742
-
(2003)
Plant J
, vol.35
, pp. 729-742
-
-
Downes, B.1
Stupar, R.2
Gingerich, D.3
Vierstra, R.4
-
7
-
-
0033548055
-
A giant protease with potential to substitute for some functions of the proteasome
-
Geier E, Pfeifer G, Wilm M, Lucchiari-Hartz M, Baumeister W, Eichmann K, Niedermann G (1999) A giant protease with potential to substitute for some functions of the proteasome. Science 283: 978-981
-
(1999)
Science
, vol.283
, pp. 978-981
-
-
Geier, E.1
Pfeifer, G.2
Wilm, M.3
Lucchiari-Hartz, M.4
Baumeister, W.5
Eichmann, K.6
Niedermann, G.7
-
8
-
-
0033177869
-
Multiubiquitin chain binding subunit MCB1 (RPN10) of the 26S proteasome is essential for developmental progression in Physcomitrella patens
-
Girod PA, Fu H, Zryd JP, Vierstra RD (1999) Multiubiquitin chain binding subunit MCB1 (RPN10) of the 26S proteasome is essential for developmental progression in Physcomitrella patens. Plant Cell 11: 1457-1471
-
(1999)
Plant Cell
, vol.11
, pp. 1457-1471
-
-
Girod, P.A.1
Fu, H.2
Zryd, J.P.3
Vierstra, R.D.4
-
9
-
-
0032499199
-
A proteolytic system that compensates for loss of proteasome function
-
Glas R, Bogyo M, McMaster J, Gaczynska M, Ploegh H (1998) A proteolytic system that compensates for loss of proteasome function. Nature 392: 618-622
-
(1998)
Nature
, vol.392
, pp. 618-622
-
-
Glas, R.1
Bogyo, M.2
McMaster, J.3
Gaczynska, M.4
Ploegh, H.5
-
10
-
-
0029959103
-
Localization and post-translational processing of the wound-induced leucine aminopeptidase proteins of tomato
-
Gu YQ, Chao WS, Walling LL (1996) Localization and post-translational processing of the wound-induced leucine aminopeptidase proteins of tomato. J Biol Chem 271: 25880-25887
-
(1996)
J Biol Chem
, vol.271
, pp. 25880-25887
-
-
Gu, Y.Q.1
Chao, W.S.2
Walling, L.L.3
-
11
-
-
0037121455
-
Identification of the catalytic triad in tripeptidyl-peptidase II through site-directed mutagenesis
-
Hilbi H, Jozsa E, Tomkinson B (2002) Identification of the catalytic triad in tripeptidyl-peptidase II through site-directed mutagenesis. Biochim Biophys Acta 1601: 149-154
-
(2002)
Biochim Biophys Acta
, vol.1601
, pp. 149-154
-
-
Hilbi, H.1
Jozsa, E.2
Tomkinson, B.3
-
12
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath R, Fraser A, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, et al (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.1
Fraser, A.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
Gotta, M.6
Kanapin, A.7
Le Bot, N.8
Moreno, S.9
Sohrmann, M.10
-
13
-
-
0033525086
-
The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes: Implications for understanding the degradative mechanism and antigen presentation
-
Kisselev AF, Akopian TN, Woo KM, Goldberg AL (1999) The sizes of peptides generated from protein by mammalian 26 and 20 S proteasomes: implications for understanding the degradative mechanism and antigen presentation. J Biol Chem 274: 3363-3371
-
(1999)
J Biol Chem
, vol.274
, pp. 3363-3371
-
-
Kisselev, A.F.1
Akopian, T.N.2
Woo, K.M.3
Goldberg, A.L.4
-
14
-
-
0037821846
-
Inhibition of proteasome activity induces concerted expression of proteasome genes and de novo formation of mammalian proteasomes
-
Meiners S, Heyken D, Weller A, Ludwig A, Stangl K, Kloetzel PM, Kruger E (2003) Inhibition of proteasome activity induces concerted expression of proteasome genes and de novo formation of mammalian proteasomes. J Biol Chem 278: 21517-21525
-
(2003)
J Biol Chem
, vol.278
, pp. 21517-21525
-
-
Meiners, S.1
Heyken, D.2
Weller, A.3
Ludwig, A.4
Stangl, K.5
Kloetzel, P.M.6
Kruger, E.7
-
15
-
-
0032505053
-
A new large proteolytic complex distinct from the proteasome is present in the cytosol of fission yeast
-
Osmulski PA, Gaczynska M (1998) A new large proteolytic complex distinct from the proteasome is present in the cytosol of fission yeast. Curr Biol 8: 1023-1026
-
(1998)
Curr Biol
, vol.8
, pp. 1023-1026
-
-
Osmulski, P.A.1
Gaczynska, M.2
-
16
-
-
0035895299
-
Cells adapted to the proteasome inhibitor 4-hydroxy5-iodo-3- nitrophenylacetyl-Leu-Leu-leucinal-vinyl sulfone require enzymatically active proteasomes for continued survival
-
Princiotta M, Schubert U, Chen W, Bennink J, Myung J, Crews C, Yewdell J (2001) Cells adapted to the proteasome inhibitor 4-hydroxy5-iodo-3- nitrophenylacetyl-Leu-Leu-leucinal-vinyl sulfone require enzymatically active proteasomes for continued survival. Proc Natl Acad Sci USA 98: 513-518
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 513-518
-
-
Princiotta, M.1
Schubert, U.2
Chen, W.3
Bennink, J.4
Myung, J.5
Crews, C.6
Yewdell, J.7
-
17
-
-
1842785206
-
A major role for TPPII in trimming proteasomal degradation products for MHC class I antigen presentation
-
Reits E, Neijssen J, Herberts C, Benckhuijsen W, Janssen L, Drijfhout J, Neefjes J (2004) A major role for TPPII in trimming proteasomal degradation products for MHC class I antigen presentation. Immunity 20: 495-506
-
(2004)
Immunity
, vol.20
, pp. 495-506
-
-
Reits, E.1
Neijssen, J.2
Herberts, C.3
Benckhuijsen, W.4
Janssen, L.5
Drijfhout, J.6
Neefjes, J.7
-
18
-
-
0032563205
-
Characterization and cloning of tripeptidyl peptidase II from the fruit fly, Drosophila melanogaster
-
Renn S, Tomkinson B, Taghert P (1998) Characterization and cloning of tripeptidyl peptidase II from the fruit fly, Drosophila melanogaster. J Biol Chem 273: 19173-19132
-
(1998)
J Biol Chem
, vol.273
, pp. 19173-119132
-
-
Renn, S.1
Tomkinson, B.2
Taghert, P.3
-
19
-
-
18744374439
-
A giant protease with a twist: The TPP II complex from Drosophila studied by electron microscopy
-
Rockel B, Peters J, Kuhlmorgen B, Glaeser R, Baumeister W (2002) A giant protease with a twist: the TPP II complex from Drosophila studied by electron microscopy. EMBO J 21: 5979-5984
-
(2002)
EMBO J
, vol.21
, pp. 5979-5984
-
-
Rockel, B.1
Peters, J.2
Kuhlmorgen, B.3
Glaeser, R.4
Baumeister, W.5
-
20
-
-
13344281002
-
Characterization and inhibition of a cholecystokinin-inactivating serine peptidase
-
Rose C, Vargas F, Facchinetti P, Bourgeat P, Bambal RB, Bishop PB, Chan SMT, Moore ANJ, Ganellin CR, Schwartz JC (1996) Characterization and inhibition of a cholecystokinin-inactivating serine peptidase. Nature 380: 403-409
-
(1996)
Nature
, vol.380
, pp. 403-409
-
-
Rose, C.1
Vargas, F.2
Facchinetti, P.3
Bourgeat, P.4
Bambal, R.B.5
Bishop, P.B.6
Chan, S.M.T.7
Moore, A.N.J.8
Ganellin, C.R.9
Schwartz, J.C.10
-
21
-
-
8744237281
-
Pathway for degradation of peptides generated by proteasomes: A key role for thimet oligopeptidase and other metallopeptidases
-
Saric T, Graef C, Goldberg A (2004) Pathway for degradation of peptides generated by proteasomes: a key role for thimet oligopeptidase and other metallopeptidases. J Biol Chem 279: 46723-46732
-
(2004)
J Biol Chem
, vol.279
, pp. 46723-46732
-
-
Saric, T.1
Graef, C.2
Goldberg, A.3
-
22
-
-
0037386260
-
An essential role for tripeptidyl peptidase in the generation of an MHC class I epitope
-
Seifert U, Maranon C, Shmueli A, Desoutter JF, Wesoloski L, Janek K, Henklein P, Diescher S, Andrieu M, de la Salle H, et al (2003) An essential role for tripeptidyl peptidase in the generation of an MHC class I epitope. Nat Immunol 4: 375-379
-
(2003)
Nat Immunol
, vol.4
, pp. 375-379
-
-
Seifert, U.1
Maranon, C.2
Shmueli, A.3
Desoutter, J.F.4
Wesoloski, L.5
Janek, K.6
Henklein, P.7
Diescher, S.8
Andrieu, M.9
De La Salle, H.10
-
23
-
-
0009706699
-
Evidence for and properties of a tripeptidyl peptidase in soybean (Glycine max Merr.) extract
-
Shimotsuura I, Yoshida N, Ogata F, Ito A (1992) Evidence for and properties of a tripeptidyl peptidase in soybean (Glycine max Merr.) extract. Plant Sci 87: 1-7
-
(1992)
Plant Sci
, vol.87
, pp. 1-7
-
-
Shimotsuura, I.1
Yoshida, N.2
Ogata, F.3
Ito, A.4
-
24
-
-
0030896832
-
Subtilases: The superfamily of subtilisin-like serine proteases
-
Siezen R, Leunissen J (1997) Subtilases: the superfamily of subtilisin-like serine proteases. Protein Sci 6: 501-523
-
(1997)
Protein Sci
, vol.6
, pp. 501-523
-
-
Siezen, R.1
Leunissen, J.2
-
25
-
-
0036007963
-
Cytokinin growth responses in Arabidopsis involve the 26S proteasome subunit RPN12
-
Smalle J, Kurepa J, Yang P, Babiychuk E, Kushnir S, Durski A, Vierstra R (2002) Cytokinin growth responses in Arabidopsis involve the 26S proteasome subunit RPN12. Plant Cell 14: 17-32
-
(2002)
Plant Cell
, vol.14
, pp. 17-32
-
-
Smalle, J.1
Kurepa, J.2
Yang, P.3
Babiychuk, E.4
Kushnir, S.5
Durski, A.6
Vierstra, R.7
-
26
-
-
0037390990
-
The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis thaliana growth and development supports a substrate-specific function in abscisic acid signaling
-
Smalle J, Kurepa J, Yang P, Emborg TJ, Babyichuk E, Kushnir S, Vierstra RD (2003) The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis thaliana growth and development supports a substrate-specific function in abscisic acid signaling. Plant Cell 15: 965-980
-
(2003)
Plant Cell
, vol.15
, pp. 965-980
-
-
Smalle, J.1
Kurepa, J.2
Yang, P.3
Emborg, T.J.4
Babyichuk, E.5
Kushnir, S.6
Vierstra, R.D.7
-
27
-
-
3242665372
-
The ubiquitin 26S proteasome proteolytic pathway
-
Smalle J, Vierstra R (2004) The ubiquitin 26S proteasome proteolytic pathway. Annu Rev Plant Biol 55: 555-590
-
(2004)
Annu Rev Plant Biol
, vol.55
, pp. 555-590
-
-
Smalle, J.1
Vierstra, R.2
-
28
-
-
0029831775
-
Tricorn protease: The core of a modular proteolytic system
-
Tamura T, Tamura N, Cejka Z, Hegerl R, Lottspeich F, Baumeister W (1996) Tricorn protease: the core of a modular proteolytic system. Science 274: 1385-1389
-
(1996)
Science
, vol.274
, pp. 1385-1389
-
-
Tamura, T.1
Tamura, N.2
Cejka, Z.3
Hegerl, R.4
Lottspeich, F.5
Baumeister, W.6
-
29
-
-
14744281878
-
Autophagic recycling: Lessons from yeast help define the process in plants
-
Thompson A, Vierstra R (2005) Autophagic recycling: lessons from yeast help define the process in plants. Curr Opin Plant Biol 8: 165-173
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 165-173
-
-
Thompson, A.1
Vierstra, R.2
-
30
-
-
0033198680
-
Tripeptidyl peptidases: Enzymes that count
-
Tomkinson B (1999) Tripeptidyl peptidases: enzymes that count. Trends Biochem Sci 24: 355-359
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 355-359
-
-
Tomkinson, B.1
-
31
-
-
0034656287
-
Association and dissociation of the tripeptidyl-peptidase II complex as a way of regulating the enzyme activity
-
Tomkinson B (2000) Association and dissociation of the tripeptidyl-peptidase II complex as a way of regulating the enzyme activity. Arch Biochem Biophys 376: 275-280
-
(2000)
Arch Biochem Biophys
, vol.376
, pp. 275-280
-
-
Tomkinson, B.1
-
32
-
-
0036121048
-
The insert within the catalytic domain of tripeptidyl-peptidase II is important for the formation of the active complex
-
Tomkinson B, Laoi B, Wellington K (2002) The insert within the catalytic domain of tripeptidyl-peptidase II is important for the formation of the active complex. Eur J Biochem 269: 1438-1443
-
(2002)
Eur J Biochem
, vol.269
, pp. 1438-1443
-
-
Tomkinson, B.1
Laoi, B.2
Wellington, K.3
-
33
-
-
0030267548
-
Proteolysis in plants: Mechanisms and functions
-
Vierstra R (1996) Proteolysis in plants: mechanisms and functions. Plant Mol Biol 32: 275-302
-
(1996)
Plant Mol Biol
, vol.32
, pp. 275-302
-
-
Vierstra, R.1
-
34
-
-
0032867676
-
The 26S proteasome: A molecular machine designed for controlled proteolysis
-
Voges D, Zwickl P, Baumeister W (1999) The 26S proteasome: a molecular machine designed for controlled proteolysis. Annu Rev Biochem 68: 1015-1068
-
(1999)
Annu Rev Biochem
, vol.68
, pp. 1015-1068
-
-
Voges, D.1
Zwickl, P.2
Baumeister, W.3
-
35
-
-
0028070376
-
Existence of a molecular ruler in proteasomes suggested by analysis of degradation products
-
Wenzel T, Eckerskom C, Lottspeich F, Baumeister W (1994) Existence of a molecular ruler in proteasomes suggested by analysis of degradation products. FEBS Lett 349: 205-209
-
(1994)
FEBS Lett
, vol.349
, pp. 205-209
-
-
Wenzel, T.1
Eckerskom, C.2
Lottspeich, F.3
Baumeister, W.4
-
36
-
-
0035853037
-
RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: A negative feedback circuit
-
Xie Y, Varshavsky A (2001) RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: a negative feedback circuit. Proc Natl Acad Sci USA 98: 3056-3061
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 3056-3061
-
-
Xie, Y.1
Varshavsky, A.2
-
37
-
-
0034512691
-
The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine
-
Yan N, Doelling JH, Falbel TG, Durski AM, Vierstra RD (2000) The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine. Plant Physiol 124: 1828-1843
-
(2000)
Plant Physiol
, vol.124
, pp. 1828-1843
-
-
Yan, N.1
Doelling, J.H.2
Falbel, T.G.3
Durski, A.M.4
Vierstra, R.D.5
-
38
-
-
1342346597
-
Purification of the Arabidopsis 26S proteasome: Biochemical and molecular analyses revealed the presence of multiple isoforms
-
Yang P, Fu H, Walker J, Papa C, Smalle J, Ju Y-M, Vierstra R (2004) Purification of the Arabidopsis 26S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. J Biol Chem 279: 6401-6413
-
(2004)
J Biol Chem
, vol.279
, pp. 6401-6413
-
-
Yang, P.1
Fu, H.2
Walker, J.3
Papa, C.4
Smalle, J.5
Ju, Y.-M.6
Vierstra, R.7
|