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Volumn 27, Issue 3, 2004, Pages 334-342

rRNA and dnaK relationships of Bradyrhizobium sp. nodule bacteria from four Papilionoid legume trees in Costa Rica

Author keywords

Bradyrhizobium elkanii; Bradyrhizobium japonicum; Lateral gene transfer; Leguminosae; Tropical biodiversity

Indexed keywords

NITROGENASE; PROTEIN DNAK; RIBOSOME RNA;

EID: 2642587193     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/0723-2020-00266     Document Type: Article
Times cited : (36)

References (52)
  • 2
    • 0030816742 scopus 로고    scopus 로고
    • Can three inconguence tests predict when data should be combined?
    • Cunningham, C. W.: Can three inconguence tests predict when data should be combined? Mol. Biol. Evol. 14, 733-740 (1997).
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 733-740
    • Cunningham, C.W.1
  • 5
    • 0025788069 scopus 로고
    • Recombination in Escherchia coli and the definition of biological species
    • Dykhuizen, D. E., Green, L.: Recombination in Escherchia coli and the definition of biological species. J. Bacteriol. 173, 7257-7268 (1991).
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 6
    • 0033901449 scopus 로고    scopus 로고
    • RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the alpha subclass of Proteobacteria
    • Evguenieva-Hackenberg, E., Klug, G.: RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the alpha subclass of Proteobacteria. J. Bacteriol. 182, 4719-4729 (2000).
    • (2000) J. Bacteriol. , vol.182 , pp. 4719-4729
    • Evguenieva-Hackenberg, E.1    Klug, G.2
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J.: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791 (1985).
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 0002751226 scopus 로고
    • Tephrosieae
    • (R. M. Polhill, P. H. Raven, eds.). Royal Botanical Gardens, Kew, UK
    • Geesink, R.: Tephrosieae, pp. 245-260. In: Advances in Legume Systematics, part 1. (R. M. Polhill, P. H. Raven, eds.). Royal Botanical Gardens, Kew, UK. (1981)
    • (1981) Advances in Legume Systematics, Part 1 , pp. 245-260
    • Geesink, R.1
  • 13
    • 0022376704 scopus 로고
    • Dating the Human-ape split by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H., Yano, T.: Dating the Human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174 (1985).
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 14
    • 0031889348 scopus 로고    scopus 로고
    • Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America
    • Haukka, K., Lindstrom, K., Young, J. P. W.: Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America. Appl. Env. Microbiol. 64, 419-426 (1998).
    • (1998) Appl. Env. Microbiol. , vol.64 , pp. 419-426
    • Haukka, K.1    Lindstrom, K.2    Young, J.P.W.3
  • 15
    • 0033765849 scopus 로고    scopus 로고
    • Phylogenetic systematics of the tribe Millettieae (Leguminosae) based on chloroplast trnK/matK sequences and its implications for evolutionary patterns in Papilionoideae
    • Hu, J.-M., Lavin, M., Wojciechowski, M. F., Sanderson, M. J.: Phylogenetic systematics of the tribe Millettieae (Leguminosae) based on chloroplast trnK/matK sequences and its implications for evolutionary patterns in Papilionoideae. Amer. J. Bot. 87, 418-430 (2000).
    • (2000) Amer. J. Bot. , vol.87 , pp. 418-430
    • Hu, J.-M.1    Lavin, M.2    Wojciechowski, M.F.3    Sanderson, M.J.4
  • 17
    • 0031707698 scopus 로고    scopus 로고
    • Molecular diversity of rhizobia occurring on native shrubby legumes in southeastern Australia
    • Lafay, B., Burdon, J. J.: Molecular diversity of rhizobia occurring on native shrubby legumes in southeastern Australia. Appl. Env. Microbiol. 64, 3989-3997 (1998).
    • (1998) Appl. Env. Microbiol. , vol.64 , pp. 3989-3997
    • Lafay, B.1    Burdon, J.J.2
  • 18
    • 0035052315 scopus 로고    scopus 로고
    • Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts
    • Laguerre, G., Nour, S. M., Macheret, V., Sanjuan, J., Drouin, P., Amarger, N.: Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts. Microbiology 147, 981-993 (2001).
    • (2001) Microbiology , vol.147 , pp. 981-993
    • Laguerre, G.1    Nour, S.M.2    Macheret, V.3    Sanjuan, J.4    Drouin, P.5    Amarger, N.6
  • 20
    • 0028140170 scopus 로고
    • Genotypic and phenotypic comparisons of chromosomal types within an indigenous soil population of Rhizobium leguminosarum bv. trifolii
    • Leung, K., Strain, S. R., de Bruijn, F. J., Bottomley, P. J.: Genotypic and phenotypic comparisons of chromosomal types within an indigenous soil population of Rhizobium leguminosarum bv. trifolii. Appl. Env. Microbiol. 60, 416-426 (1994).
    • (1994) Appl. Env. Microbiol. , vol.60 , pp. 416-426
    • Leung, K.1    Strain, S.R.2    De Bruijn, F.J.3    Bottomley, P.J.4
  • 21
    • 0003586408 scopus 로고    scopus 로고
    • Cambridge University Press, Cambridge, UK
    • Mabberley, D. J.: The Plant Book. Cambridge University Press, Cambridge, UK (1997).
    • (1997) The Plant Book
    • Mabberley, D.J.1
  • 22
    • 0032126875 scopus 로고    scopus 로고
    • Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil
    • Moreira F. M. S., Haukka K., Young J. P. W.: Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil. Molec. Ecol. 7, 889-895 (1998).
    • (1998) Molec. Ecol. , vol.7 , pp. 889-895
    • Moreira, F.M.S.1    Haukka, K.2    Young, J.P.W.3
  • 23
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys, T., Nakamura, L. K., Cohan, F. M.: Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int. J. Syst. Bacteriol. 47, 1145-1156 (1997).
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 24
    • 0032755260 scopus 로고    scopus 로고
    • Relationships of bradyrhizobia from the legumes Apios americana and Desmodium glutinosum
    • Parker, M. A.: Relationships of bradyrhizobia from the legumes Apios americana and Desmodium glutinosum. Appl. Env. Microbiol. 65, 4914-4920 (1999).
    • (1999) Appl. Env. Microbiol. , vol.65 , pp. 4914-4920
    • Parker, M.A.1
  • 25
    • 0034489933 scopus 로고    scopus 로고
    • Divergent Bradyrhizobium symbionts on Tachigali versicolor from Barro Colorado Island, Panama
    • Parker, M. A.: Divergent Bradyrhizobium symbionts on Tachigali versicolor from Barro Colorado Island, Panama. Syst. Appl. Microbiol. 23, 585-590 (2000).
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 585-590
    • Parker, M.A.1
  • 26
    • 0035344698 scopus 로고    scopus 로고
    • Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with Neotropical legumes
    • Parker, M. A.: Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with Neotropical legumes. Appl. Env. Microbiol. 67, 2076-2082 (2001).
    • (2001) Appl. Env. Microbiol. , vol.67 , pp. 2076-2082
    • Parker, M.A.1
  • 27
    • 0036211217 scopus 로고    scopus 로고
    • Bradyrhizobia from wild Phaseolus, Desmodium, and Macroptilium species in northern Mexico
    • Parker, M. A.: Bradyrhizobia from wild Phaseolus, Desmodium, and Macroptilium species in northern Mexico. Appl. Environ. Microbiol. 68, 2044-2048 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2044-2048
    • Parker, M.A.1
  • 28
    • 0041874641 scopus 로고    scopus 로고
    • Genetic markers for analyzing symbiotic relationships and lateral gene transfer in Neotropical bradyrhizobia
    • Parker, M. A.: Genetic markers for analyzing symbiotic relationships and lateral gene transfer in Neotropical bradyrhizobia. Molec. Ecol. 12, 2447-2455 (2003a).
    • (2003) Molec. Ecol. , vol.12 , pp. 2447-2455
    • Parker, M.A.1
  • 29
    • 0041857343 scopus 로고    scopus 로고
    • A widespread Neotropical Bradyrhizobium lineage associated with Machaerium and Desmodium (Papilionoideae)
    • Parker, M. A.: A widespread Neotropical Bradyrhizobium lineage associated with Machaerium and Desmodium (Papilionoideae). Plant Soil 254, 263-268 (2003b).
    • (2003) Plant Soil , vol.254 , pp. 263-268
    • Parker, M.A.1
  • 30
    • 0034126928 scopus 로고    scopus 로고
    • Relationships of bradyrhizobia from Platypodium and Machaerium (Papilionoideae tribe Dalbergieae) on Barro Colorado Island, Panama
    • Parker, M. A., Lunk, A.: Relationships of bradyrhizobia from Platypodium and Machaerium (Papilionoideae tribe Dalbergieae) on Barro Colorado Island, Panama. Int. J. Syst. Evol. Microbiol. 50, 1179-1186 (2000).
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1179-1186
    • Parker, M.A.1    Lunk, A.2
  • 31
    • 0036667447 scopus 로고    scopus 로고
    • Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium
    • Parker, M. A., Lafay, B., Burdon, J. J., van Berkum, P.: Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium. Microbiology 148, 2557-2565 (2002).
    • (2002) Microbiology , vol.148 , pp. 2557-2565
    • Parker, M.A.1    Lafay, B.2    Burdon, J.J.3    Van Berkum, P.4
  • 32
    • 0000373190 scopus 로고
    • Dalbergieae
    • (R. M. Polhill, P. H. Raven, eds.). Royal Botanical Gardens, Kew, UK
    • Polhill, R. M.: Dalbergieae, pp. 233-242. In: Advances in Legume Systematics, part 1. (R. M. Polhill, P. H. Raven, eds.). Royal Botanical Gardens, Kew, UK (1981).
    • (1981) Advances in Legume Systematics, Part 1 , pp. 233-242
    • Polhill, R.M.1
  • 33
    • 0035989122 scopus 로고    scopus 로고
    • Contrasting nifD and ribosomal gene relationships among Mesorhizobium from Lotus oroboides in northern Mexico
    • Qian, J., Parker, M. A.: Contrasting nifD and ribosomal gene relationships among Mesorhizobium from Lotus oroboides in northern Mexico. System. Appl. Microbiol. 25, 68-73 (2002).
    • (2002) System. Appl. Microbiol. , vol.25 , pp. 68-73
    • Qian, J.1    Parker, M.A.2
  • 34
    • 0345701207 scopus 로고    scopus 로고
    • rRNA and nifD phylogeny of Bradyrhizobium from sites across the Pacific Basin
    • Qian, J., Kwon, S. W., Parker, M. A.: rRNA and nifD phylogeny of Bradyrhizobium from sites across the Pacific Basin. FEMS Microbiol. Let. 219, 159-165 (2003).
    • (2003) FEMS Microbiol. Let. , vol.219 , pp. 159-165
    • Qian, J.1    Kwon, S.W.2    Parker, M.A.3
  • 35
    • 0001936758 scopus 로고
    • Biogeography of the Leguminosae
    • R. M. Polhill, P. H. Raven, eds.). Royal Botanical Gardens, Kew, UK
    • Raven, P. H., Polhill, R. M.: Biogeography of the Leguminosae, pp. 27-34. In: Advances in Legume Systematics, part 1. (R. M. Polhill, P. H. Raven, eds.). Royal Botanical Gardens, Kew, UK (1981).
    • (1981) Advances in Legume Systematics, Part 1 , pp. 27-34
    • Raven, P.H.1    Polhill, R.M.2
  • 36
  • 37
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 39
    • 0030046399 scopus 로고    scopus 로고
    • Nonrandom genotypic associations in a legume-Bradyrhizobium mutualism
    • Spoerke, J. M., Wilkinson, H. H., Parker, M. A.: Nonrandom genotypic associations in a legume-Bradyrhizobium mutualism. Evolution 50, 146-154 (1996).
    • (1996) Evolution , vol.50 , pp. 146-154
    • Spoerke, J.M.1    Wilkinson, H.H.2    Parker, M.A.3
  • 40
    • 0033614336 scopus 로고    scopus 로고
    • Bacterial population genetics, evolution and epidemiology
    • Spratt, B. G., Maiden, M. C. J.: Bacterial population genetics, evolution and epidemiology. Phil. Trans. R. Soc. Lond. B 354, 701-710 (1999).
    • (1999) Phil. Trans. R. Soc. Lond. B , vol.354 , pp. 701-710
    • Spratt, B.G.1    Maiden, M.C.J.2
  • 41
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E., Goebel, B. M.: Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849 (1994).
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 43
    • 0032883089 scopus 로고    scopus 로고
    • Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences
    • Sterner, J. P., Parker, M. A.: Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences. Syst. Appl. Microbiol. 22, 387-392 (1999).
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 387-392
    • Sterner, J.P.1    Parker, M.A.2
  • 44
    • 0029049193 scopus 로고
    • Nodulating strains of Rhizobium loti arise through chromosomal symbiotic gene transfer in the enviroment
    • Sullivan, J. T., Patrick, H. N., Lowther, W. L., Scott, D. B., Ronson, C. W.: Nodulating strains of Rhizobium loti arise through chromosomal symbiotic gene transfer in the enviroment. Proc. Natl. Acad. Sci. USA 92, 8885-8889 (1995).
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 8885-8889
    • Sullivan, J.T.1    Patrick, H.N.2    Lowther, W.L.3    Scott, D.B.4    Ronson, C.W.5
  • 45
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment thorugh sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgans, D. G., Gibson, T. J.: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment thorugh sequence weighting, position specific gap penalties and weight matrix choice. Nucl. Acids. Res. 22, 4673-4680 (1994).
    • (1994) Nucl. Acids. Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgans, D.G.2    Gibson, T.J.3
  • 48
    • 0032926125 scopus 로고    scopus 로고
    • Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: A case for the genetic coherence of rhizobial lineages
    • Wernegreen, J. J., Riley, M. A.: Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: a case for the genetic coherence of rhizobial lineages. Mol. Biol. Evol. 16, 98-113 (1999).
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 98-113
    • Wernegreen, J.J.1    Riley, M.A.2
  • 49
    • 0029660860 scopus 로고    scopus 로고
    • Divergence in symbiotic compatibility in a legume-Bradyrhizobi-um mutualism
    • Wilkinson, H. H., Spoerke, J. M., Parker, M. A.: Divergence in symbiotic compatibility in a legume-Bradyrhizobi-um mutualism. Evolution 50, 1470-1477 (1996).
    • (1996) Evolution , vol.50 , pp. 1470-1477
    • Wilkinson, H.H.1    Spoerke, J.M.2    Parker, M.A.3
  • 50
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R.: Bacterial evolution. Microbiol. Rev. 51, 221-271 (1987).
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 51
    • 0032835111 scopus 로고    scopus 로고
    • Distinct types of rRNA operons exist in the genome of the acctinomycete Thermomonospora chromogena and evidence for horozontal transfer of an entire rRNA operon
    • Yap, W. H., Zhang, Z., Wang, Y.: Distinct types of rRNA operons exist in the genome of the acctinomycete Thermomonospora chromogena and evidence for horozontal transfer of an entire rRNA operon. J. Bacteriol. 181, 5201-5209 (1999).
    • (1999) J. Bacteriol. , vol.181 , pp. 5201-5209
    • Yap, W.H.1    Zhang, Z.2    Wang, Y.3
  • 52
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • (J. Barciszewski, B.F.C. Clark, eds.). Kluwer Academic Publishers, The Netherlands
    • Zuker, M., Mathews, D. H., Turner, D. H.: Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide, pp. 11-43. In: RNA Biochemistry and Biotechnology. NATO ASI Series. (J. Barciszewski, B.F.C. Clark, eds.). Kluwer Academic Publishers, The Netherlands (1999).
    • (1999) RNA. Biochemistry and Biotechnology. NATO ASI Series , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


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