A widespread Neotropical Bradyrhizobium lineage associated with Machaerium and Desmodium (Papilionoideae)

Plant and Soil

Volumn 254, Issue 2, 2003, Pages 263-268

  Parker, Matthew A ^a  

^a BINGHAMTON UNIVERSITY   (United States)

Author keywords

23S rRNA; Costa Rica; Geographic variation; Leguminosae; Panama; Rhizobiaceae

Indexed keywords

GENETIC VARIATION; GEOGRAPHICAL VARIATION; RHIZOBACTERIUM; TROPICAL FOREST;

COSTA RICA; PANAMA;

BACTERIA (MICROORGANISMS); BRADYRHIZOBIUM; DESMODIUM; DESMODIUM AXILLARE; FABACEAE; MACHAERIUM; MACHAERIUM MILLIFLORUM; PAPILIONOIDEAE; RHIZOBIACEAE; RHIZOBIUM;

EID: 0041857343     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1025523818780     Document Type: Article

References (25)

1. Brunel B, Cleyet-Marel J.-C, Normand P and Bardin R 1988 Stability of Bradyrhizobium japonicum inoculants after introduction into soil. Appl. Env. Microbiol. 54, 2636-2642.
2. Croat T B 1978 Flora of Barro Colorado Island. Stanford University Press, Stanford, CA. 943 p.
3. de Faria S M, Franco A A, de Jesus R M, Menandro M S, Baitello J. B., Mucci E S F, Dobereiner J and Sprent J I 1984 New nodulating legume trees from south east Brazil. New Phytol. 111, 607-619.
4. Doyle J J, Doyle J L, Ballenger J A, Dickson E E, Kajita T and Ohashi O 1997 A phylogeny of the chloroplast gene rbcl in the Leguminosae: taxonomic correlations and insights into the evolution of nodulation. Amer. J. Bot. 84, 541-554.
5. Elkins D M, Hamilton G, Chan C K Y, Briskovich M A and Vandeventer J W 1976 Effects of cropping history on soybean growth and nodulation and soil rhizobia. Agron. J. 68, 513-517.
6. Felsenstein J 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Foster R B and Brokaw N V L 1996 Structure and history of the vegetation on Barro Colorado Island). In The Ecology of a Tropical Forest: Seasonal Rhythms and Long-Term Changes (second edition). Eds. E G Leigh, A S Rand and D M Windsor. pp. 67-81. Smithsonian Institution, Washington, DC.
8. Gilmour M N, Whittam T S, Kilian M and Selander R K 1987 Genetic relationships among the oral Streptococci. J. Bacteriol. 169, 5247-5257.
9. Graham P H, Sadowsky M J, Keyser H H, Barnet Y M, Bradley R S, Cooper J E, de Ley D J, Jarvis B D W, Roslycky E B, Strijdom B W and Young J P W 1991 Proposed minimum standards for the description of new genera and species of root- and stem-nodulating bacteria. Int. J. Syst. Bacteriol 41, 582-587.
10. Leung K, Strain S R, de Bruijn F J and P J Bottomley 1994 Genotypic and phenotypic comparisons of chromosomal types within an indigenous soil population of Rhizobium leguminosarum bv. trifolii. Appl. Env. Microbiol. 60, 416-426.
11. Moreira F M S, Haukka K and Young J P W 1998 Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil. Mol. Ecol. 7, 889-895.
12. Parker M A 2000 Divergent Bradyrhizobium symbionts on Tachigali versicolor from Barro Colorado Island, Panama. Syst. Appl. Microbiol. 23, 585-590.
13. Parker M A 2001 Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with Neotropical legumes. Appl. Env. Microbiol. 67, 2076-2082.
14. Parker M A 2002 Bradyrhizobia from wild Phaseolus, Desmodium and Macroptilium species in northern Mexico. Appl. Env. Microbiol. 68, 2044-2048.
15. Parker M A and Spoerke J M 1998 Geographic structure of lineage associations in a plant-bacterial mutualism. J. Evol. Biol. 11, 549-562.
16. Parker M A and Lunk A 2000 Relationships of bradyrhizobia from Platypodium and Machaerium (Papilionoideae tribe Dalbergieae) on Barro Colorado Island, Panama. Int. J. Syst. Evol. Microbiol. 50, 1179-1186.
17. Perez-Ramirez N O, Rogel M A, Wang E, Castellanos J Z and Martinez-Romero E 1998 Seeds of Phaseolus vulgaris bean carry Rhizobium etli. FEMS Microbiol. Ecol. 26, 289-296.
18. Raven P H and Polhill R M 1981 Biogeography of the Leguminosae. In Advances in Legume Systematics. Eds. R M Polhill and P H Raven. pp. 27-34. Royal Botanical Gardens, Kew, U.K.
19. Saitou N and Nei M 1987 The neighbor-joining method, a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
20. Spoerke J M, Wilkinson H H and Parker M A 1996 Nonrandom genotypic associations in a legume-Bradyrhizobium mutualism. Evolution 50, 146-154.
21. Stackebrandt E and Goebel B M 1994 Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849.
22. Sterner J P and Parker M A 1999 Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences. Syst. Appl. Microbiol. 22, 387-392.
23. Thompson J D, Higgans D G and Gibson T J 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
24. van Berkum P and Fuhrmann J J 2000 Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence. Int. J. Syst. Evol. Microbiol. 50, 2165-2172.
25. Vincent J M 1970 A Manual for the Practical Study of the Root-Nodule Bacteria. Blackwell, Oxford, UK. 164 pp.