Factors affecting SFHR gene correction efficiency with single-stranded DNA fragment

Biochemical and Biophysical Research Communications

Volumn 336, Issue 4, 2005, Pages 1194-1200

  Tsuchiya, Hiroyuki ^a   Harashima, Hideyoshi ^b   Kamiya, Hiroyuki ^b  

^a TOTTORI UNIVERSITY   (Japan)

^b NONE

Author keywords

Gene correction; Homologous recombination; SFHR; Single stranded DNA fragment

Indexed keywords

ADENINE; DNA FRAGMENT; SINGLE STRANDED DNA;

ANIMAL CELL; ARTICLE; CHO CELL; FEMALE; GENE; GENE CORRECTION; GENE TARGETING; GENETIC ENHANCEMENT; GENETIC PROCEDURES; GENETIC TRANSCRIPTION; GENETIC TRANSFECTION; HOMOLOGOUS RECOMBINATION; METHYLATION; NONHUMAN; PRIORITY JOURNAL; SMALL FRAGMENT HOMOLOGOUS REPLACEMENT GENE;

ADENINE; ANIMALS; CHO CELLS; CRICETINAE; CRICETULUS; DNA; DNA, SINGLE-STRANDED; GREEN FLUORESCENT PROTEINS; METHYLATION; MUTATION; PLASMIDS; TRANSCRIPTION, GENETIC;

EID: 25644437704     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.08.258     Document Type: Article

References (24)

1. P.D. Richardson, L.B. Augustin, B.T. Kren, and C.J. Steer Gene repair and transposon-mediated gene therapy Stem Cells 20 2002 105 118
2. D.C. Gruenert, E. Bruscia, G. Novelli, A. Colosimo, B. Dallapiccola, F. Sangiuolo, and K.K. Goncz Sequence-specific modification of genomic DNA by small DNA fragments J. Clin. Inves. 112 2003 637 641
3. K. Kunzelmann, J.Y. Legendre, D.L. Knoell, L.C. Escobar, Z. Xu, and D.C. Gruenert Gene targeting of CFTR DNA in CF epithelial cells Gene Ther. 3 1996 859 867
4. K.K. Goncz, K. Kunzelmann, Z. Xu, and D.C. Gruenert Targeted replacement of normal and mutant CFTR sequences in human airway epithelial cells using DNA fragments Hum. Mol. Genet. 7 1998 1913 1919
5. A. Colosimo, K.K. Goncz, G. Novelli, B. Dallapiccola, and D.C. Gruenert Targeted correction of a defective selectable marker gene in human epithelial cells by small DNA fragments Mol. Ther. 3 2001 178 185
6. R. Kapsa, A. Quigley, G.S. Lynch, K. Steeper, A.J. Kornberg, P. Gregorevic, L. Austin, and E. Byrne In vivo and in vitro correction of the mdx dystrophin gene nonsense mutation by short-fragment homologous replacement Hum. Gene Ther. 12 2001 629 642
7. K.K. Goncz, A. Colosimo, B. Dallapiccola, L. Gagne, K. Hon, G. Novelli, D. Papahadjopoulos, T. Sawa, H. Schreier, J. Wiener-Kronish, Z. Xu, and D.C. Gruenert Expression of ΔF508 CFTR in normal mouse lung after site-specific modification of CFTR sequences by SFHR Gene Ther. 8 2001 961 965
8. H. Tsuchiya, H. Harashima, and H. Kamiya Increased SFHR gene correction efficiency with sense single-stranded DNA J. Gene Med. 7 2005 486 493
9. J. Sambrook, and D.W. Russell Molecular Cloning third ed. 2001 Cold Spring Harbor Laboratory Press New York
10. B.P. Palmer, and M.G. Marinus The dam and dcm strains of Escherichia coli-a review Gene 143 1994 1 12
11. S.C. West Molecular views of recombination proteins and their control Nat. Rev. Mol. Cell. Biol. 4 2003 435 445
12. L.H. Thompson, and D. Schild Recombinational DNA repair and human disease Mutat. Res. 509 2002 49 78
13. T. Shibata, T. Nishinaka, T. Mikawa, H. Aihara, H. Kurumizaka, S. Yokoyama, and Y. Ito Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material Proc. Natl. Acad. Sci. USA 98 2001 8425 8432
14. R.D. Kolodner, and G.T. Marsischky Eukaryotic DNA mismatch repair Curr. Opin. Genet. Dev. 9 1999 89 96
15. L. Stojic, R. Brun, and J. Jiricny Mismatch repair and DNA damage signalling DNA Repair 3 2004 1091 1101
16. L. Liu, S. Cheng, A.J. van Brabant, and E.B. Kmiec Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors Nucleic Acids Res. 30 2002 2742 2750
17. O. Igoucheva, V. Alexeev, and K. Yoon Nuclear extracts promote gene correction and strand pairing of oligonucleotides to the homologous plasmid Antisense Nucleic Acid Drug Dev. 12 2002 235 246
18. P.H. Thorpe, B.J. Stevenson, and D.J. Porteous Functional correction of episomal mutations with short DNA fragments and RNA-DNA oligonucleotides J. Gene Med. 4 2002 195 204
19. P.A. Olsen, C. McKeen, and S. Krauss Branched oligonucleotides induce in vivo gene conversion of a mutated EGFP reporter Gene Ther. 10 2003 1830 1840
20. P. Modrich Methyl-directed DNA mismatch correction J. Biol. Chem. 264 1989 6597 6600
21. O. Igoucheva, V. Alexeeve, and K. Yoon Oligonucleotide-directed mutagenesis and targeted gene correction: a mechanistic point of view Curr. Mol. Med. 4 2004 445 463
22. L. Liu, H. Parekh-Olmedo, and E.B. Kmiec The development and regulation of gene repair Nat. Rev. Genet. 4 2003 679 689
23. E.E. Brachman, and E.B. Kmiec Targeted nucleotide repair of cyc1 mutations in Saccharomyces cerevisiae directed by modified single-stranded DNA oligonucleotides Genetics 163 2003 527 538
24. T. Yamamoto, R.P. Moerschell, L.P. Wakem, S. Komar-Panicucci, and F. Sherman Strand-specificity in the transformation of yeast with synthetic oligonucleotides Genetics 131 1992 811 819