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Volumn 6, Issue , 2005, Pages

Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes

Author keywords

[No Author keywords available]

Indexed keywords

26 S PROTEASOME; ALIGNMENT TECHNIQUE; COMMON ARCHITECTURE; COP9 SIGNALOSOME; MULTIPLE INSTANCES; SEQUENCE SIMILARITY; STRUCTURAL ELEMENTS; STRUCTURAL MODELING;

EID: 25444464111     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-71     Document Type: Article
Times cited : (81)

References (44)
  • 1
    • 0035206221 scopus 로고    scopus 로고
    • PCI complexes: Pretty complex interactions in diverse signaling pathways
    • Kim T, Hofmann K, von Arnim AG, Chamovitz DA: PCI complexes: pretty complex interactions in diverse signaling pathways. Trends Plant Sci 2001, 6(8):379-386.
    • (2001) Trends Plant Sci. , vol.6 , Issue.8 , pp. 379-386
    • Kim, T.1    Hofmann, K.2    von Arnim, A.G.3    Chamovitz, D.A.4
  • 2
    • 0032104227 scopus 로고    scopus 로고
    • The PCI domain: A common theme in three multiprotein complexes
    • Hofmann K, Bucher P: The PCI domain: a common theme in three multiprotein complexes. Trends Biochem Sci 1998, 23(6):204-205.
    • (1998) Trends Biochem. Sci. , vol.23 , Issue.6 , pp. 204-205
    • Hofmann, K.1    Bucher, P.2
  • 3
    • 0031836475 scopus 로고    scopus 로고
    • Homologues of 26S proteasome subunits are regulators of transcription and translation
    • Aravind L, Ponting CP: Homologues of 26S proteasome subunits are regulators of transcription and translation. Protein Sci 1998, 7(5):1250-1254.
    • (1998) Protein Sci. , vol.7 , Issue.5 , pp. 1250-1254
    • Aravind, L.1    Ponting, C.P.2
  • 4
    • 0034725525 scopus 로고    scopus 로고
    • Electron microscopy and subunit-subunit interaction studies reveal a first architecture of COP9 signalosome
    • Kapelari B, Bech-Otschir D, Hegerl R, Schade R, Dumdey R, Dubiel W: Electron microscopy and subunit-subunit interaction studies reveal a first architecture of COP9 signalosome. J Mol Biol 2000, 300(5):1169-1178.
    • (2000) J. Mol. Biol. , vol.300 , Issue.5 , pp. 1169-1178
    • Kapelari, B.1    Bech-Otschir, D.2    Hegerl, R.3    Schade, R.4    Dumdey, R.5    Dubiel, W.6
  • 5
    • 0037126632 scopus 로고    scopus 로고
    • Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome
    • Fu H, Reis N, Lee Y, Glickman MH, Vierstra RD: Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. Embo J 2001, 20(24):7096-7107.
    • (2001) Embo. J. , vol.20 , Issue.24 , pp. 7096-7107
    • Fu, H.1    Reis, N.2    Lee, Y.3    Glickman, M.H.4    Vierstra, R.D.5
  • 6
    • 0032483546 scopus 로고    scopus 로고
    • A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3
    • Glickman MH, Rubin DM, Coux O, Wefes I, Pfeifer G, Cjeka Z, Baumeister W, Fried VA, Finley D: A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3. Cell 1998, 94(5):615-623.
    • (1998) Cell , vol.94 , Issue.5 , pp. 615-623
    • Glickman, M.H.1    Rubin, D.M.2    Coux, O.3    Wefes, I.4    Pfeifer, G.5    Cjeka, Z.6    Baumeister, W.7    Fried, V.A.8    Finley, D.9
  • 7
    • 0037131243 scopus 로고    scopus 로고
    • Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome
    • Verma R, Aravind L, Oania R, McDonald WH, Yates JR, Koonin EV, Deshaies RJ: Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome. Science 2002, 298(5593):611-615.
    • (2002) Science , vol.298 , Issue.5593 , pp. 611-615
    • Verma, R.1    Aravind, L.2    Oania, R.3    McDonald, W.H.4    Yates, J.R.5    Koonin, E.V.6    Deshaies, R.J.7
  • 8
    • 34248350363 scopus 로고    scopus 로고
    • MPN+, a putative catalytic motif found in a subset of MPN domain proteins from eukaryotes and prokaryotes, is critical for Rpn11 function
    • Maytal-Kivity V, Reis N, Hofmann K, Glickman MH: MPN+, a putative catalytic motif found in a subset of MPN domain proteins from eukaryotes and prokaryotes, is critical for Rpn11 function. BMC Biochem 2002, 3(1):28.
    • (2002) BMC Biochem. , vol.3 , Issue.1 , pp. 28
    • Maytal-Kivity, V.1    Reis, N.2    Hofmann, K.3    Glickman, M.H.4
  • 9
    • 0037179694 scopus 로고    scopus 로고
    • A cryptic protease couples deubiquitination and degradation by the proteasome
    • Yao T, Cohen RE: A cryptic protease couples deubiquitination and degradation by the proteasome. Nature 2002, 419(6905):403-407.
    • (2002) Nature , vol.419 , Issue.6905 , pp. 403-407
    • Yao, T.1    Cohen, R.E.2
  • 10
    • 0037480420 scopus 로고    scopus 로고
    • The COP9 signalosome: Regulating plant development through the control of proteolysis
    • Serino G, Deng XW: The COP9 signalosome: regulating plant development through the control of proteolysis. Annu Rev Plant Biol 2003, 54:165-182.
    • (2003) Annu. Rev. Plant Biol. , vol.54 , pp. 165-182
    • Serino, G.1    Deng, X.W.2
  • 11
    • 0035478483 scopus 로고    scopus 로고
    • COP9 signalosome revisited: A novel mediator of protein degradation
    • Schwechheimer C, Deng XW: COP9 signalosome revisited: a novel mediator of protein degradation. Trends Cell Biol 2001, 11(10):420-426.
    • (2001) Trends Cell Biol. , vol.11 , Issue.10 , pp. 420-426
    • Schwechheimer, C.1    Deng, X.W.2
  • 13
    • 0031033314 scopus 로고    scopus 로고
    • Conservation and diversity of eukaryotic translation initiation factor eIF3
    • Asano K, Kinzy TG, Merrick WC, Hershey JW: Conservation and diversity of eukaryotic translation initiation factor eIF3. J Biol Chem 1997, 272(2):1101-1109.
    • (1997) J. Biol. Chem. , vol.272 , Issue.2 , pp. 1101-1109
    • Asano, K.1    Kinzy, T.G.2    Merrick, W.C.3    Hershey, J.W.4
  • 14
    • 0033213918 scopus 로고    scopus 로고
    • Translation initiation: Adept at adapting
    • Dever TE: Translation initiation: adept at adapting. Trends Biochem Sci 1999, 24(10):398-403.
    • (1999) Trends Biochem. Sci. , vol.24 , Issue.10 , pp. 398-403
    • Dever, T.E.1
  • 15
    • 0141706654 scopus 로고    scopus 로고
    • Structure of the Jab1/MPN domain and its implications for proteasome function
    • Tran HJ, Allen MD, Lowe J, Bycroft M: Structure of the Jab1/MPN domain and its implications for proteasome function. Biochemistry 2003, 42(39):11460-11465.
    • (2003) Biochemistry , vol.42 , Issue.39 , pp. 11460-11465
    • Tran, H.J.1    Allen, M.D.2    Lowe, J.3    Bycroft, M.4
  • 16
    • 0035808382 scopus 로고    scopus 로고
    • The subunit 1 of the COP9 signalosome suppresses gene expression through its N-terminal domain and incorporates into the complex through the PCI domain
    • Tsuge T, Matsui M, Wei N: The subunit 1 of the COP9 signalosome suppresses gene expression through its N-terminal domain and incorporates into the complex through the PCI domain. J Mol Biol 2001, 305(1):1-9.
    • (2001) J. Mol. Biol. , vol.305 , Issue.1 , pp. 1-9
    • Tsuge, T.1    Matsui, M.2    Wei, N.3
  • 17
    • 0035865256 scopus 로고    scopus 로고
    • Related eIF3 subunits TIF32 and HCR1 interact with an RNA recognition motif in PRT1 required for eIF3 integrity and ribosome binding
    • Valasek L, Phan L, Schoenfeld LW, Valaskova V, Hinnebusch AG: Related eIF3 subunits TIF32 and HCR1 interact with an RNA recognition motif in PRT1 required for eIF3 integrity and ribosome binding. Embo J 2001, 20(4):891-904.
    • (2001) Embo. J. , vol.20 , Issue.4 , pp. 891-904
    • Valasek, L.1    Phan, L.2    Schoenfeld, L.W.3    Valaskova, V.4    Hinnebusch, A.G.5
  • 18
    • 0037145505 scopus 로고    scopus 로고
    • The proteasome regulatory particle subunit Rpn6 is required for Drosophila development and interacts physically with signalosome subunit Alien/CSN2
    • Lier S, Paululat A: The proteasome regulatory particle subunit Rpn6 is required for Drosophila development and interacts physically with signalosome subunit Alien/CSN2. Gene 2002, 298(2):109-119.
    • (2002) Gene , vol.298 , Issue.2 , pp. 109-119
    • Lier, S.1    Paululat, A.2
  • 20
    • 0030093114 scopus 로고    scopus 로고
    • A flexible motif search technique based on generalized profiles
    • Bucher P, Karplus K, Moeri N, Hofmann K: A flexible motif search technique based on generalized profiles. Comput Chem 1996, 20(1):3-23.
    • (1996) Comput. Chem. , vol.20 , Issue.1 , pp. 3-23
    • Bucher, P.1    Karplus, K.2    Moeri, N.3    Hofmann, K.4
  • 25
    • 0142057156 scopus 로고    scopus 로고
    • Characterization of eIF3k: A newly discovered subunit of mammalian translation initiation factor elF3
    • Mayeur GL, Fraser CS, Peiretti F, Block KL, Hershey JW: Characterization of eIF3k: a newly discovered subunit of mammalian translation initiation factor elF3. Eur J Biochem 2003, 270(20):4133-4139.
    • (2003) Eur. J. Biochem. , vol.270 , Issue.20 , pp. 4133-4139
    • Mayeur, G.L.1    Fraser, C.S.2    Peiretti, F.3    Block, K.L.4    Hershey, J.W.5
  • 26
    • 4544304063 scopus 로고    scopus 로고
    • Crystal Structure of Human eIF3k, the First Structure of eIF3 Subunits
    • Wei Z, Zhang P, Zhou Z, Cheng Z, Wan M, Gong W: Crystal Structure of Human eIF3k, the First Structure of eIF3 Subunits. J Biol Chem 2004, 279(33):34983-34990.
    • (2004) J. Biol. Chem. , vol.279 , Issue.33 , pp. 34983-34990
    • Wei, Z.1    Zhang, P.2    Zhou, Z.3    Cheng, Z.4    Wan, M.5    Gong, W.6
  • 28
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES: Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 2003, 423(6937):241-254.
    • (2003) Nature , vol.423 , Issue.6937 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 29
    • 0344628648 scopus 로고    scopus 로고
    • TPR proteins: The versatile helix
    • D'Andrea LD, Regan L: TPR proteins: the versatile helix. Trends Biochem Sci 2003, 28(12):655-662.
    • (2003) Trends Biochem. Sci. , vol.28 , Issue.12 , pp. 655-662
    • D'Andrea, L.D.1    Regan, L.2
  • 30
    • 0041620432 scopus 로고    scopus 로고
    • The PredictProtein server
    • Rost B, Liu J: The PredictProtein server. Nucleic Acids Res 2003, 31(13):3300-3304.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.13 , pp. 3300-3304
    • Rost, B.1    Liu, J.2
  • 32
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough J, Karplus K, Hughey R, Chothia C: Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 2001, 313(4):903-919.
    • (2001) J. Mol. Biol. , vol.313 , Issue.4 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 33
    • 0035900747 scopus 로고    scopus 로고
    • Dual function of eIF3j/Hcr1p in processing 20 S pre-rRNA and translation initiation
    • Valasek L, Hasek J, Nielsen KH, Hinnebusch AG: Dual function of eIF3j/Hcr1p in processing 20 S pre-rRNA and translation initiation. J Biol Chem 2001, 276(46):43351-43360.
    • (2001) J. Biol. Chem. , vol.276 , Issue.46 , pp. 43351-43360
    • Valasek, L.1    Hasek, J.2    Nielsen, K.H.3    Hinnebusch, A.G.4
  • 34
    • 0035824649 scopus 로고    scopus 로고
    • The human protein HSPC021 interacts with Int-6 and is associated with eukaryotic translation initiation factor 3
    • Morris-Desbois C, Rety S, Ferro M, Garin J, Jalinot P: The human protein HSPC021 interacts with Int-6 and is associated with eukaryotic translation initiation factor 3. J Biol Chem 2001, 276(49):45988-45995.
    • (2001) J. Biol. Chem. , vol.276 , Issue.49 , pp. 45988-45995
    • Morris-Desbois, C.1    Rety, S.2    Ferro, M.3    Garin, J.4    Jalinot, P.5
  • 35
    • 0030765455 scopus 로고    scopus 로고
    • Dali/FSSP classification of three-dimensional protein folds
    • Holm L, Sander C: Dali/FSSP classification of three-dimensional protein folds. Nucleic Acids Res 1997, 25(1):231-234.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.1 , pp. 231-234
    • Holm, L.1    Sander, C.2
  • 36
    • 2942609332 scopus 로고    scopus 로고
    • The PAM domain, a multiprotein complex-associated module with an all-alpha-helix fold
    • Ciccarelli FD, Izaurralde E, Bork P: The PAM domain, a multiprotein complex-associated module with an all-alpha-helix fold. BMC Bioinformatics 2003, 4(1):64.
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 64
    • Ciccarelli, F.D.1    Izaurralde, E.2    Bork, P.3
  • 37
    • 0037147328 scopus 로고    scopus 로고
    • What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome
    • Kajava AV: What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome. J Biol Chem 2002, 277(51):49791-49798.
    • (2002) J. Biol. Chem. , vol.277 , Issue.51 , pp. 49791-49798
    • Kajava, A.V.1
  • 38
    • 10044250974 scopus 로고    scopus 로고
    • ZOMES III: The interface between signalling and proteolysis
    • Chang EC, Schwechheimer C: ZOMES III: the interface between signalling and proteolysis. EMBO Rep 2004, 5(11):1041-1045.
    • (2004) EMBO Rep. , vol.5 , Issue.11 , pp. 1041-1045
    • Chang, E.C.1    Schwechheimer, C.2
  • 39
    • 3042646350 scopus 로고    scopus 로고
    • Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae
    • Isono E, Saeki Y, Yokosawa H, Toh-e A: Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem 2004, 279(26):27168-27176.
    • (2004) J. Biol. Chem. , vol.279 , Issue.26 , pp. 27168-27176
    • Isono, E.1    Saeki, Y.2    Yokosawa, H.3    Toh-e, A.4
  • 40
    • 0030861438 scopus 로고    scopus 로고
    • The Swiss-Prot Protein Sequence Data Bank and Its Supplement Trembl
    • Bairoch A, Apweiler R: The Swiss-Prot Protein Sequence Data Bank and Its Supplement Trembl. Nucleic Acids Research 1997, 25(1):31-36.
    • (1997) Nucleic Acids Research , vol.25 , Issue.1 , pp. 31-36
    • Bairoch, A.1    Apweiler, R.2
  • 41
    • 0025282693 scopus 로고
    • Recent changes in the GenBank On-line Service
    • Benton D: Recent changes in the GenBank On-line Service. Nucleic Acids Research 1990, 18(6):1517-1520.
    • (1990) Nucleic Acids Research , vol.18 , Issue.6 , pp. 1517-1520
    • Benton, D.1
  • 43
    • 0034189150 scopus 로고    scopus 로고
    • Sensitive protein comparisons with profiles and hidden Markov models
    • Hofmann K: Sensitive protein comparisons with profiles and hidden Markov models. Brief Bioinform 2000, 1(2):167-178.
    • (2000) Brief Bioinform. , vol.1 , Issue.2 , pp. 167-178
    • Hofmann, K.1
  • 44
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J: T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 2000, 302(1):205-217.
    • (2000) J. Mol. Biol. , vol.302 , Issue.1 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3


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