-
1
-
-
0030864811
-
Combinatorial protein design: Strategies for screening protein libraries
-
Zhao, H., and Arnold, F. H. (1997) Combinatorial protein design: strategies for screening protein libraries. Curr. Opin. Struct. Biol. 7, 480-485.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 480-485
-
-
Zhao, H.1
Arnold, F.H.2
-
2
-
-
0032085975
-
Combinatorial protein design by in vitro recombination
-
Giver, L., and Arnold, F. H. (1998) Combinatorial protein design by in vitro recombination, Curr. Opin. Chem. Biol. 2, 335-338.
-
(1998)
Curr. Opin. Chem. Biol.
, vol.2
, pp. 335-338
-
-
Giver, L.1
Arnold, F.H.2
-
3
-
-
0035471140
-
Protein design and phage display
-
Hoess, R. H. (2001) Protein design and phage display, Chem. Rev. 101, 3205-3218.
-
(2001)
Chem. Rev.
, vol.101
, pp. 3205-3218
-
-
Hoess, R.H.1
-
4
-
-
0035471132
-
De novo proteins from combinatorial libraries
-
Moffet, D. A., and Hecht, M. H. (2001) De novo proteins from combinatorial libraries, Chem. Rev. 101, 3191-3203.
-
(2001)
Chem. Rev.
, vol.101
, pp. 3191-3203
-
-
Moffet, D.A.1
Hecht, M.H.2
-
5
-
-
0028110130
-
DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolution
-
Stemmer, W. P. (1994) DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution, Proc. Natl. Acad. Sci. U.S.A. 91, 10747-10751.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 10747-10751
-
-
Stemmer, W.P.1
-
6
-
-
0031909113
-
Molecular evolution by staggered extension process (StEP) in vitro recombination
-
Zhao, H., Giver, L., Shao, Z., Affholter, J. A., and Arnold, F. H. (1998) Molecular evolution by staggered extension process (StEP) in vitro recombination, Nat. Biotechnol. 16, 258-261.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 258-261
-
-
Zhao, H.1
Giver, L.2
Shao, Z.3
Affholter, J.A.4
Arnold, F.H.5
-
7
-
-
0032518266
-
DNA shuffling of a family of genes from diverse species accelerates directed evolution
-
Crameri, A., Raillard, S. A., Bermudez, E., and Stemmer, W. P. (1998) DNA shuffling of a family of genes from diverse species accelerates directed evolution, Nature 391, 288-291.
-
(1998)
Nature
, vol.391
, pp. 288-291
-
-
Crameri, A.1
Raillard, S.A.2
Bermudez, E.3
Stemmer, W.P.4
-
8
-
-
17444363724
-
A combinatorial approach to hybrid enzymes independent of DNA homology
-
Ostermeier, M., Shim, J. H., and Benkovic, S. J. (1999) A combinatorial approach to hybrid enzymes independent of DNA homology, Nat. Biotechnol. 17, 1205-1209.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 1205-1209
-
-
Ostermeier, M.1
Shim, J.H.2
Benkovic, S.J.3
-
9
-
-
0035949702
-
Creating multiple-crossover DNA libraries independent of sequence identity
-
Lutz, S., Ostermeier, M., Moore, G. L., Maranas, C. D., and Benkovic, S. J. (2001) Creating multiple-crossover DNA libraries independent of sequence identity, Proc. Natl. Acad. Sci. U.S.A. 98, 11248-11253.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 11248-11253
-
-
Lutz, S.1
Ostermeier, M.2
Moore, G.L.3
Maranas, C.D.4
Benkovic, S.J.5
-
10
-
-
0035025314
-
Libraries of hybrid proteins from distantly related sequences
-
Sieber, V., Martinez, C. A., and Arnold, F. H. (2001) Libraries of hybrid proteins from distantly related sequences, Nat. Biotechnol. 19, 456-460.
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 456-460
-
-
Sieber, V.1
Martinez, C.A.2
Arnold, F.H.3
-
11
-
-
0033052969
-
A hierarchical approach to protein molecular evolution
-
Bogarad, L. D., and Deem, M. W. (1999) A hierarchical approach to protein molecular evolution, Proc. Natl. Acad. Sci. U.S.A. 96, 2591-2595.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 2591-2595
-
-
Bogarad, L.D.1
Deem, M.W.2
-
12
-
-
0036289574
-
Protein building blocks preserved by recombination
-
Voigt, C. A., Martinez, C., Wang, Z. G., Mayo, S. L., and Arnold, F. H. (2002) Protein building blocks preserved by recombination, Nat. Struct. Biol. 9, 553-558.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 553-558
-
-
Voigt, C.A.1
Martinez, C.2
Wang, Z.G.3
Mayo, S.L.4
Arnold, F.H.5
-
13
-
-
0036960601
-
Structure-based combinatorial protein engineering (SCOPE)
-
O'Maille, P. E., Bakhtina, M., and Tsai, M. D. (2002) Structure-based combinatorial protein engineering (SCOPE), J. Mol. Biol. 321, 677-691.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 677-691
-
-
O'Maille, P.E.1
Bakhtina, M.2
Tsai, M.D.3
-
14
-
-
0038799745
-
General method for sequence-independent site-directed chimeragenesis
-
Hiraga, K., and Arnold, F. H. (2003) General method for sequence-independent site-directed chimeragenesis, J. Mol. Biol. 330, 287-296.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 287-296
-
-
Hiraga, K.1
Arnold, F.H.2
-
15
-
-
0021112782
-
Cloning, sequencing, and secretion of Bacillus amyloliquefaciens subtilisin in Bacillus subtilis
-
Wells, J. A., Ferrari, E., Henner, D. J., Estell, D. A., and Chen, E. Y. (1983) Cloning, sequencing, and secretion of Bacillus amyloliquefaciens subtilisin in Bacillus subtilis, Nucleic Acids Res. 11, 7911-7925.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 7911-7925
-
-
Wells, J.A.1
Ferrari, E.2
Henner, D.J.3
Estell, D.A.4
Chen, E.Y.5
-
16
-
-
0021127425
-
Genes for alkaline protease and neutral protease from Bacillus amyloliquefaciens contain a large open reading frame between the regions coding for signal sequence and mature protein
-
Vasantha, N., Thompson, L. D., Rhodes, C., Banner, C., Nagle, J., and Filpula, D. (1984) Genes for alkaline protease and neutral protease from Bacillus amyloliquefaciens contain a large open reading frame between the regions coding for signal sequence and mature protein, J. Bacteriol. 159, 811-819.
-
(1984)
J. Bacteriol.
, vol.159
, pp. 811-819
-
-
Vasantha, N.1
Thompson, L.D.2
Rhodes, C.3
Banner, C.4
Nagle, J.5
Filpula, D.6
-
17
-
-
0000295996
-
Secretion and autoproteolytic maturation of subtilisin
-
Power, S. D., Adams, R. M., and Wells, J. A. (1986) Secretion and autoproteolytic maturation of subtilisin, Proc. Natl. Acad. Sci. U.S.A. 83, 3096-3100.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 3096-3100
-
-
Power, S.D.1
Adams, R.M.2
Wells, J.A.3
-
18
-
-
0023644876
-
Requirement of pro-sequence for the production of active subtilisin E in Escherichia coli
-
Ikemura, H., Takagi, H., and Inouye, M. (1987) Requirement of pro-sequence for the production of active subtilisin E in Escherichia coli, J. Biol. Chem. 262, 7859-7864.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 7859-7864
-
-
Ikemura, H.1
Takagi, H.2
Inouye, M.3
-
19
-
-
0023722280
-
In vitro processing of prosubtilisin produced in Escherichia coli
-
Ikemura, H., and Inouye, M. (1988) In vitro processing of prosubtilisin produced in Escherichia coli, J. Biol. Chem. 263, 12959-12963.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 12959-12963
-
-
Ikemura, H.1
Inouye, M.2
-
20
-
-
0024409494
-
Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process
-
Zhu, X. L., Ohta, Y., Jordan, F., and Inouye, M. (1989) Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process, Nature 339, 483-484.
-
(1989)
Nature
, vol.339
, pp. 483-484
-
-
Zhu, X.L.1
Ohta, Y.2
Jordan, F.3
Inouye, M.4
-
21
-
-
0027244542
-
Catalysis of a protein folding reaction: Thermodynamic and kinetic analysis of subtilisin BPN′ interactions with its propeptide fragment
-
Strausberg, S., Alexander, P., Wang, L., Schwarz, F., and Bryan, P. (1993) Catalysis of a protein folding reaction: thermodynamic and kinetic analysis of subtilisin BPN′ interactions with its propeptide fragment, Biochemistry 32, 8112-8119.
-
(1993)
Biochemistry
, vol.32
, pp. 8112-8119
-
-
Strausberg, S.1
Alexander, P.2
Wang, L.3
Schwarz, F.4
Bryan, P.5
-
22
-
-
0026168310
-
Pro-peptide as an intramolecular chaperone: Renaturation of denatured subtilisin E with a synthetic pro-peptide
-
Ohta, Y., Hojo, H., Aimoto, S., Kobayashi, T., Zhu, X., Jordan, F., and Inouye, M. (1991) Pro-peptide as an intramolecular chaperone: renaturation of denatured subtilisin E with a synthetic pro-peptide, Mol. Microbiol. 5, 1507-1510.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 1507-1510
-
-
Ohta, Y.1
Hojo, H.2
Aimoto, S.3
Kobayashi, T.4
Zhu, X.5
Jordan, F.6
Inouye, M.7
-
23
-
-
0028973036
-
Prodomain mutations at the subtilisin interface: Correlation of binding energy and the rate of catalyzed folding
-
Wang, L., Ruvinov, S., Strausberg, S., Gallagher, D. T., Gilliland, G., and Bryan, P. N. (1995) Prodomain mutations at the subtilisin interface: correlation of binding energy and the rate of catalyzed folding, Biochemistry 34, 15415-15420.
-
(1995)
Biochemistry
, vol.34
, pp. 15415-15420
-
-
Wang, L.1
Ruvinov, S.2
Strausberg, S.3
Gallagher, D.T.4
Gilliland, G.5
Bryan, P.N.6
-
24
-
-
0030855458
-
The propeptide of subtilisin BPN′ as a temporary inhibitor and effect of an amino acid replacement on its inhibitory activity
-
Kojima, S., Minagawa, T., and Miura, K. (1997) The propeptide of subtilisin BPN′ as a temporary inhibitor and effect of an amino acid replacement on its inhibitory activity, FEBS Lett. 411, 128-132.
-
(1997)
FEBS Lett.
, vol.411
, pp. 128-132
-
-
Kojima, S.1
Minagawa, T.2
Miura, K.3
-
25
-
-
0034596066
-
Folding pathway mediated by an intramolecular chaperone. The inhibitory and chaperone functions of the subtilisin propeptide are not obligatorily linked
-
Fu, X., Inouye, M., and Shinde, U. (2000) Folding pathway mediated by an intramolecular chaperone. The inhibitory and chaperone functions of the subtilisin propeptide are not obligatorily linked, J. Biol. Chem. 275, 16871-16878.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 16871-16878
-
-
Fu, X.1
Inouye, M.2
Shinde, U.3
-
26
-
-
0035976917
-
Folding pathway mediated by an intramolecular chaperone: Propeptide release modulates activation precision of pro-subtilisin
-
Yabuta, Y., Takagi, H., Inouye, M., and Shinde, U. (2001) Folding pathway mediated by an intramolecular chaperone: propeptide release modulates activation precision of pro-subtilisin, J. Biol. Chem. 276, 44427-44434.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 44427-44434
-
-
Yabuta, Y.1
Takagi, H.2
Inouye, M.3
Shinde, U.4
-
27
-
-
0029645412
-
The prosegment-subtilisin BPN′ complex: Crystal structure of a specific 'foldase'
-
Gallagher, T., Gilliland, G., Wang, L., and Bryan, P. (1995) The prosegment-subtilisin BPN′ complex: crystal structure of a specific 'foldase', Structure 3, 907-914.
-
(1995)
Structure
, vol.3
, pp. 907-914
-
-
Gallagher, T.1
Gilliland, G.2
Wang, L.3
Bryan, P.4
-
28
-
-
0029645279
-
Catalysis of a protein folding reaction: Mechanistic implications of the 2.0 Å structure of the subtilisin-prodomain complex
-
Bryan, P., Wang, L., Hoskins, J., Ruvinov, S., Strausberg, S., Alexander, P., Almog, O., Gilliland, G., and Gallagher, T. (1995) Catalysis of a protein folding reaction: mechanistic implications of the 2.0 Å structure of the subtilisin-prodomain complex, Biochemistry 34, 10310-10318.
-
(1995)
Biochemistry
, vol.34
, pp. 10310-10318
-
-
Bryan, P.1
Wang, L.2
Hoskins, J.3
Ruvinov, S.4
Strausberg, S.5
Alexander, P.6
Almog, O.7
Gilliland, G.8
Gallagher, T.9
-
29
-
-
0027451307
-
Folding of subfilisin BPN′: Role of the pro-sequence
-
Eder, J., Rheinnecker, M., and Fersht, A. R. (1993) Folding of subfilisin BPN′: role of the pro-sequence, J. Mol. Biol. 233, 293-304.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 293-304
-
-
Eder, J.1
Rheinnecker, M.2
Fersht, A.R.3
-
30
-
-
0033614826
-
Rapid folding of calcium-free subtilisin by a stabilized pro-domain mutant
-
Ruan, B., Hoskins, J., and Bryan, P. N. (1999) Rapid folding of calcium-free subtilisin by a stabilized pro-domain mutant, Biochemistry 38, 8562-8571.
-
(1999)
Biochemistry
, vol.38
, pp. 8562-8571
-
-
Ruan, B.1
Hoskins, J.2
Bryan, P.N.3
-
31
-
-
0030803268
-
Engineering the independent folding of the subtilisin BPN′ prodomain: Analysis of two-state folding versus protein stability
-
Ruvinov, S., Wang, L., Ruan, B., Almog, O., Gilliland, G. L., Eisenstein, E., and Bryan, P. N. (1997) Engineering the independent folding of the subtilisin BPN′ prodomain: analysis of two-state folding versus protein stability, Biochemistry 36, 10414-10421.
-
(1997)
Biochemistry
, vol.36
, pp. 10414-10421
-
-
Ruvinov, S.1
Wang, L.2
Ruan, B.3
Almog, O.4
Gilliland, G.L.5
Eisenstein, E.6
Bryan, P.N.7
-
32
-
-
0032478201
-
Engineering the independent folding of the subtilisin BPN′ prodomain: Correlation of pro-domain stability with the rate of subtilisin folding
-
Wang, L., Ruan, B., Ruvinov, S., and Bryan, P. N. (1998) Engineering the independent folding of the subtilisin BPN′ prodomain: correlation of pro-domain stability with the rate of subtilisin folding, Biochemistry 37, 3165-3171.
-
(1998)
Biochemistry
, vol.37
, pp. 3165-3171
-
-
Wang, L.1
Ruan, B.2
Ruvinov, S.3
Bryan, P.N.4
-
33
-
-
0031733866
-
Stabilizing the subtilisin BPN′ pro-domain by phage display selection: How restrictive is the amino acid code for maximum protein stability?
-
Ruan, B., Hoskins, J., Wang, L., and Bryan, P. N. (1998) Stabilizing the subtilisin BPN′ pro-domain by phage display selection: how restrictive is the amino acid code for maximum protein stability?, Protein Sci. 7, 2345-2353.
-
(1998)
Protein Sci.
, vol.7
, pp. 2345-2353
-
-
Ruan, B.1
Hoskins, J.2
Wang, L.3
Bryan, P.N.4
-
34
-
-
0032540306
-
Tertiary structure formation in the propeptide of subtilisin BPN′ by successive amino acid replacements and its close relation to function
-
Kojima, S., Minagawa, T., and Miura, K. (1998) Tertiary structure formation in the propeptide of subtilisin BPN′ by successive amino acid replacements and its close relation to function, J. Mol. Biol. 277, 1007-1013.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1007-1013
-
-
Kojima, S.1
Minagawa, T.2
Miura, K.3
-
35
-
-
0028860209
-
The complete amino acid sequences of two serine proteinase inhibitors from the fruiting bodies of a basidiomycete, Pleurotus ostreatus
-
Dohmae, N., Takio, K., Tsumuraya, Y., and Hashimoto, Y. (1995) The complete amino acid sequences of two serine proteinase inhibitors from the fruiting bodies of a basidiomycete, Pleurotus ostreatus, Arch. Biochem. Biophys. 316, 498-506.
-
(1995)
Arch. Biochem. Biophys.
, vol.316
, pp. 498-506
-
-
Dohmae, N.1
Takio, K.2
Tsumuraya, Y.3
Hashimoto, Y.4
-
36
-
-
0029411216
-
Purification and characterization of intracellular proteinases in Pleurotus ostreatus fruiting bodies
-
Dohmae, N., Hayashi, K., Miki, K., Tsumuraya, Y., and Hashimoto, Y. (1995) Purification and characterization of intracellular proteinases in Pleurotus ostreatus fruiting bodies, Biosci., Biotechnol., Biochem. 59, 2074-2080.
-
(1995)
Biosci., Biotechnol., Biochem.
, vol.59
, pp. 2074-2080
-
-
Dohmae, N.1
Hayashi, K.2
Miki, K.3
Tsumuraya, Y.4
Hashimoto, Y.5
-
37
-
-
0036298326
-
Structure of POIA1, a homologous protein to the propeptide of subtilisin: Implication for protein foldability and the function as an intramolecular chaperone
-
Sasakawa, H., Yoshinaga, S., Kojima, S., and Tamura, A. (2002) Structure of POIA1, a homologous protein to the propeptide of subtilisin: implication for protein foldability and the function as an intramolecular chaperone, J. Mol. Biol. 317, 159-167.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 159-167
-
-
Sasakawa, H.1
Yoshinaga, S.2
Kojima, S.3
Tamura, A.4
-
38
-
-
0036084625
-
SCOP database in 2002: Refinements accommodate structural genomics
-
Lo Conte, L., Brenner, S. E., Hubbard, T. J., Chothia, C., and Murzin, A. G. (2002) SCOP database in 2002: refinements accommodate structural genomics, Nucleic Acids Res. 30, 264-267.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 264-267
-
-
Lo Conte, L.1
Brenner, S.E.2
Hubbard, T.J.3
Chothia, C.4
Murzin, A.G.5
-
39
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill, S. C., and von Hippel, P. H. (1989) Calculation of protein extinction coefficients from amino acid sequence data, Anal. Biochem. 182, 319-326.
-
(1989)
Anal. Biochem.
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
40
-
-
0031938211
-
Engineering of a cold-adapted protease by sequential random mutagenesis and a screening system
-
Taguchi, S., Ozaki, A., and Momose, H. (1998) Engineering of a cold-adapted protease by sequential random mutagenesis and a screening system, Appl. Environ. Microbiol. 64, 492-495.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 492-495
-
-
Taguchi, S.1
Ozaki, A.2
Momose, H.3
-
41
-
-
0015327378
-
A linear equation that describes the steady-state kinetics of enzymes and subcellular particles interacting with tightly bound inhibitors
-
Henderson, P. J. (1972) A linear equation that describes the steady-state kinetics of enzymes and subcellular particles interacting with tightly bound inhibitors, Biochem. J. 127, 321-333.
-
(1972)
Biochem. J.
, vol.127
, pp. 321-333
-
-
Henderson, P.J.1
-
42
-
-
0034816338
-
Alteration of inhibitory properties of Pleurotus ostreatus proteinase A inhibitor 1 by mutation of its C-terminal region
-
Kojima, S., Hisano, Y., and Miura, K. (2001) Alteration of inhibitory properties of Pleurotus ostreatus proteinase A inhibitor 1 by mutation of its C-terminal region, Biochem. Biophys. Res. Commun. 281, 1271-1276.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.281
, pp. 1271-1276
-
-
Kojima, S.1
Hisano, Y.2
Miura, K.3
-
43
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wuthrich, K. (1996) MOLMOL: a program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
|