DnaK-facilitated ribosome assembly in Escherichia coli revisited

RNA

Volumn 9, Issue 7, 2003, Pages 787-793

  Alix, Jean Hervé ^a   Nierhaus, Knud H ^b  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Assembly helpers; DnaK chaperone; In vitro reconstitution; Ribosome assembly

Indexed keywords

CHAPERONE; MUTANT PROTEIN; PROTEIN DNAK;

ARTICLE; BACTERIAL STRAIN; BACTERIUM MUTANT; CONTROLLED STUDY; CULTURE MEDIUM; ESCHERICHIA COLI; GENE DISRUPTION; GENETIC STABILITY; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INDUCTION; PROTEIN SYNTHESIS; RIBOSOME SUBUNIT; TEMPERATURE DEPENDENCE; THERMOSTABILITY; WILD TYPE;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HSP70 HEAT-SHOCK PROTEINS; KINETICS; RIBOSOMES; THERMODYNAMICS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0038382885     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.5360203     Document Type: Article

References (38)

1. Alix, J.-H. 1993. Extrinsic factors in ribosome assembly. In The translational apparatus: Structure, function, regulation, evolution (eds. K.H. Nierhaus et al.), pp. 173-184. Plenum, New York.
2. Alix, J.-H and Guerin, M.F. 1993. Mutant DnaK chaperones cause ribosome assembly defects in Escherichia coli. Proc. Natl. Acad. Sci. 90: 9725-9729.
3. Benaroudj, N., Fang, B., Triniolles, F., Ghelis, C., and Ladjimi, M.M. 1994. Overexpression in Escherichia coli, purification and characterization of the molecular chaperone HSC70. Eur. J. Biochem. 221: 121-128.
4. Blaha, G., Wilson, D.N., Stoller, G., Fischer, G., Willumeit, R., and Nierhaus, K.H. 2003. Localization of the trigger factor binding site on the ribosomal 50S subunit. J. Mol. Biol. 326: 887-897.
5. Bommer, U., Burkhardt, N., Jünemann, R., Spahn, C.M.T., Triana-Alonso, F.J., and Nierhaus, K.H. 1996. Ribosomes and polysomes. In Subcellular fractionation. A practical approach (eds. J. Graham and D. Rickwoods), pp. 271-301. IRL Press, Oxford University Press, Oxford, UK.
6. Bukau, B. and Walker, G.C. 1990. Mutations altering heat shock specific subunit of RNA polymerase suppress major cellular defects of E. coli mutants lacking the DnaK chaperone. EMBO J. 9: 4027-4036.
7. Bukau, B., Deuerling, E., Pfund, C., and Craig, E.A. 2000. Getting newly synthesized proteins into shape. Cell 101: 119-122.
8. Culver, G.M. 2003. Assembly of the 30S ribosomal subunit. Biopolymers 68: 234-249.
9. Culver, G.M. and Noller, H.F. 1999. Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins. RNA 5: 832-843.
10. Deutscher, M.P., Marlor, C.W., and Zaniewski, R. 1984. Ribonuclease T: New exoribonuclease possibly involved in end-turnover of tRNA. Proc. Natl. Acad. Sci. 81: 4290-4293.
11. Dohme, F. and Nierhaus, K.H. 1976. Total reconstitution and assembly of 50S subunits from E. coli ribosomes in vitro. J. Mol. Biol. 107: 585-599.
12. El Hage, A., Sbai, M., and Alix, J.H. 2001. The chaperonin GroEL and other heat-shock proteins, besides DnaK, participate in ribosome biogenesis in Escherichia coli. Mol. Gen. Genet. 264: 796-808.
13. Geyl, D., Böck, A., and Isono, K. 1981. An improved method for 2-D gel electrophoresis: Analysis of mutationally altered ribosomal proteins of E. coli. Mol. Gen. Genet. 181: 309-312.
14. Ha, J.H., Johnson, E.-R., McKay, D.B., Sousa, M.C., Takeda, S., and Wilbanks, S.M. 1999. Structure and mechanism of HSP70 proteins. In Molecular chaperones and folding catalysts: Regulation, cellular function and mechanisms (ed. B. Bukau), pp. 573-607. Harwood Academic Publishers, Amsterdam.
15. Kramer, G., Ramachandrian, V., Horowitz, P.M., and Hardesty, B. 2002a. The molecular chaperone DnaK is not recruited to translating ribosomes that lack trigger factor. Arch. Biochem. Biophys. 403: 63-70.
16. Kramer, G., Rauch, T., Rist, W., Vorderwulbecke, S., Patzelt, H., Schulze-Specking, A., Ban, N., Deuerling, E., and Bukau, B. 2002b. L23 protein functions as a chaperone docking site on the ribosome. Nature 419: 171-174.
17. Lopes-Ferreira, N. and Alix, J.-H. 2002. The DnaK chaperone is necessary for α-complementation of β-galactosidase in Escherichia coli. J. Bacteriol. 184: 7047-7054.
18. Maki, J.A., Schnobrich, D.J., and Culver, G.M. 2002. The DnaK chaperone system facilitates 30S ribosomal subunit assembly. Mol. Cell 10: 129-138.
19. Nierhaus, K.H. 1990. Reconstitution of ribosomes. In Ribosomes and protein synthesis. A practical approach (ed. G. Spedding), pp. 161-189. IRL Press, Oxford University Press, Oxford, UK.
20. -. 1991. The assembly of prokaryotic ribosomes. Biochimie 73: 739-755.
21. Pfennig, P.L. and Flower, A.M. 2001. BipA is required for growth of Escherichia coli K12 at low temperature. Mol. Genet. Genomics 266: 313-317.
22. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning, a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
23. +. Mol. Gen. Genet. 260:199-206.
24. Seals, J.R., McDonald, J.M., Bruns, D., and Jarett, L. 1978. A sensitive and precise isotopic assay of ATPase activity. Anal. Biochem. 90: 785-795.
25. Sell, S.M., Eisen, C., Ang, D., Zylicz, M., and Georgopoulos, C. 1990. Isolation and characterization of dnaJ null mutants of Escherichia coli. J. Bacteriol. 172: 4827-4835.
26. Semrad, K. and Green, R. 2002. Osmolytes stimulate the reconstitution of functional 50S ribosomes from in vitro transcripts of Escherichia coli 23S rRNA. RNA 8: 401-411.
27. Singer, M., Baker, T.A., Schnitzler, G., Deischel, S.M., Goel, M., Dove, W., Jaacks, K.J., Grossman, A.D., Erickson, J.W., and Gross, C.A. 1989. A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. Microbiol. Rev. 53: 1-24.
28. Takebe, Y., Miura, A., Bedwell, D.M., Tam, M., and Nomura, M. 1985. Increased expression of ribosomal genes during inhibition of ribosome assembly in Escherichia coli. J. Mol. Biol. 184: 23-30.
29. Tal, M., Silberstein, A., and Moyner, K. 1977. In vivo reassembly of 30S ribosomal subunits following their specific destruction by thermal shock. Biochim. Biophys. Acta 479: 479-496.
30. Tomoyasu, T., Mogk, A., Langen, H., Goloubinoff, P., and Bukau, B. 2001. Genetic dissection of the roles of chaperones and proteases in protein folding and degradation in the Escherichia coli cytosol. Mol. Microbiol. 40: 397-413.
31. Torres, M., Condon, C., Balada, J.M., Squires, C., and Squires, C.L. 2001. Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination. EMBO J. 20: 3811-3820.
32. Traub, P. and Nomura, M. 1969. Structure and function of the Escherichia coli ribosome. Mechanism of assembly of 30S ribosomes studied in vitro. J. Mol. Biol. 40: 391-413.
33. Vysokanov, A.V. 1995. Synthesis of chloramphenicol acetyltransferase in a coupled transcription-translation in vitro system lacking the chaperones DnaK and DnaJ. FEBS Lett. 375: 211-214.
34. Williamson, J.R. 2003. After the ribosome structures: How are the subunits assembled? RNA 9: 165-167.
35. Wireman, J.W. and Sypherd, P.S. 1975. Temperature dependence for physical and functional reconstitution of 30S ribosomes of E. coli. Biochem. Biophys. Res. Commun. 66: 570-577.
36. Wright, M. 1971. Mutants of Escherichia coli lacking endonuclease I, ribonuclease I, or ribonuclease II. J. Bacteriol. 107: 87-94.
37. Zaniewski, R., Petkaites, E., and Deutscher, M.P. 1984. A multiple mutant of Escherichia coli lacking the exoribonucleases RNase II, RNase D, and RNase BN. J. Biol. Chem. 259: 11651-11653.
38. Zengel, J.M. and Lindahl, L. 1994. Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli. Prog. Nucl. Acid Res. Mol. Biol. 47: 331-370.