-
1
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A. C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A. M., Cruciat, C. M., Remor, M., Hofert, C., Schelder, M., Brajenovic, M., Ruffner, H., et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
-
2
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D., Moore, L., Adams, S. L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., Yang, L., Wolting, C., Donaldson, I., Schandorff, S., Shewnarane, J., et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
-
3
-
-
0036420990
-
Identification of transiently interacting proteins and of stable protein complexes
-
Seraphin, B. (2002) Identification of transiently interacting proteins and of stable protein complexes. Adv. Protein Chem. 61, 99-117
-
(2002)
Adv. Protein Chem.
, vol.61
, pp. 99-117
-
-
Seraphin, B.1
-
4
-
-
0036490876
-
Deciphering protein complexes and protein interaction networks by tandem affinity purification and mass spectrometry: Analytical perspective
-
Shevchenko, A., Schaft, D., Roguev, A., Pijnappel, W. W. M. P., Stewart, A. F., and Shevchenko, A. (2002) Deciphering protein complexes and protein interaction networks by tandem affinity purification and mass spectrometry: Analytical perspective. Mol. Cell. Proteomics 1, 204-212
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 204-212
-
-
Shevchenko, A.1
Schaft, D.2
Roguev, A.3
Pijnappel, W.W.M.P.4
Stewart, A.F.5
Shevchenko, A.6
-
5
-
-
0036691946
-
Roles for the two-hybrid system in exploration of the yeast protein interactome
-
Ito, T., Ota, K., Kubota, H., Yamaguchi, Y., Chiba, T., Sakuraba, K., and Yoshida, M. (2002) Roles for the two-hybrid system in exploration of the yeast protein interactome. Mol. Cell. Proteomics 1, 561-566
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 561-566
-
-
Ito, T.1
Ota, K.2
Kubota, H.3
Yamaguchi, Y.4
Chiba, T.5
Sakuraba, K.6
Yoshida, M.7
-
6
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein protein interactions
-
Von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S. G., Fields, S., and Bork, P. (2002) Comparative assessment of large-scale data sets of protein protein interactions. Nature 417, 399-403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
7
-
-
0036279153
-
Protein interaction verification and functional annotation by integrated analysis of genome-scale data
-
Kemmeren, P., van Berkum, N. L., Vilo, J., Bijma, T., Donders, R., Brazma, A., and Holstege, F. C. (2002) Protein interaction verification and functional annotation by integrated analysis of genome-scale data. Mol. Cell 9, 1133-1143
-
(2002)
Mol. Cell
, vol.9
, pp. 1133-1143
-
-
Kemmeren, P.1
van Berkum, N.L.2
Vilo, J.3
Bijma, T.4
Donders, R.5
Brazma, A.6
Holstege, F.C.7
-
8
-
-
0032489015
-
The cell as a collection of protein machines: Preparing the next generation of molecular biologists
-
Alberts, B. (1998) The cell as a collection of protein machines: Preparing the next generation of molecular biologists. Cell 92, 291-294
-
(1998)
Cell
, vol.92
, pp. 291-294
-
-
Alberts, B.1
-
9
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., and Seraphin, B. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17, 1030-1032
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
10
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
Puig, O., Caspary, F., Rigaut, G., Rutz, B., Bouveret, E., Bragado-Nilsson, E., Wilm, M., and Seraphin, B. (2001) The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods 24, 218-229
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
11
-
-
0035890135
-
The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program
-
Pijnappel, W. W., Schaft, D., Roguev, A., Shevchenko, A., Tekotte, H., Wilm, M., Rigaut, G., Seraphin, B., Aasland, R., and Stewart, A. F. (2001) The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program. Genes Dev. 15, 2991-3004
-
(2001)
Genes Dev.
, vol.15
, pp. 2991-3004
-
-
Pijnappel, W.W.1
Schaft, D.2
Roguev, A.3
Shevchenko, A.4
Tekotte, H.5
Wilm, M.6
Rigaut, G.7
Seraphin, B.8
Aasland, R.9
Stewart, A.F.10
-
12
-
-
0034980873
-
Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe
-
Tasto, J. J., Carnahan, R. H., McDonald, W. H., and Gould, K. L. (2001) Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe. Yeast 18, 657-662
-
(2001)
Yeast
, vol.18
, pp. 657-662
-
-
Tasto, J.J.1
Carnahan, R.H.2
McDonald, W.H.3
Gould, K.L.4
-
13
-
-
0037424345
-
High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts
-
Roguev, A., Schaft, D., Shevchenko, A., Aasland, R., and Stewart, A. F. (2003) High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. J. Biol. Chem. 278, 8487-8493
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 8487-8493
-
-
Roguev, A.1
Schaft, D.2
Shevchenko, A.3
Aasland, R.4
Stewart, A.F.5
-
14
-
-
0034577919
-
Where does fission yeast sit on the tree of life?
-
REVIEWS1011
-
Sipiczki, M. (2000) Where does fission yeast sit on the tree of life? Genome Biol. 1, REVIEWS1011
-
(2000)
Genome Biol.
, vol.1
-
-
Sipiczki, M.1
-
15
-
-
0037148838
-
Brouhaha over the other yeast
-
Eisen, J. A. (2002) Brouhaha over the other yeast. Nature 415, 845-848
-
(2002)
Nature
, vol.415
, pp. 845-848
-
-
Eisen, J.A.1
-
16
-
-
0037148758
-
The genome sequence of Schizosaccharomyces pombe
-
Wood, V., Gwilliam, R., Rajandream, M. A., Lyne, M., Lyne, R., Stewart, A., Sgouros, J., Peat, N., Hayles, J., Baker, S., Basham, D., Bowman, S., Brooks, K., Brown, D., Brown, S., et al. (2002) The genome sequence of Schizosaccharomyces pombe. Nature 415, 871-880
-
(2002)
Nature
, vol.415
, pp. 871-880
-
-
Wood, V.1
Gwilliam, R.2
Rajandream, M.A.3
Lyne, M.4
Lyne, R.5
Stewart, A.6
Sgouros, J.7
Peat, N.8
Hayles, J.9
Baker, S.10
Basham, D.11
Bowman, S.12
Brooks, K.13
Brown, D.14
Brown, S.15
-
17
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link, A. J., Eng, J., Schieltz, D. M., Carmack, E., Mize, G. J., Morris, D. R., Garvik, B. B., and Yates, J. R. 3rd (1999) Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17, 676-682
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.B.7
Yates III, J.R.8
-
18
-
-
0036118353
-
Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs
-
Ohi, M. D., Link, A. J., Ren, L., Jennings, J. L., McDonald, W. H., and Gould, K. L. (2002) Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Mol. Cell Biol. 22, 2011-2024
-
(2002)
Mol. Cell Biol.
, vol.22
, pp. 2011-2024
-
-
Ohi, M.D.1
Link, A.J.2
Ren, L.3
Jennings, J.L.4
McDonald, W.H.5
Gould, K.L.6
-
19
-
-
0036900585
-
Proteomics analysis identifies new components of the fission and budding yeast anaphase-promoting complexes
-
Yoon, H. J., Feoktistova, A., Wolfe, B. A., Jennings, J. L., Link, A. J., and Gould, K. L. (2002) Proteomics analysis identifies new components of the fission and budding yeast anaphase-promoting complexes. Curr. Biol. 12, 2048-2054
-
(2002)
Curr. Biol.
, vol.12
, pp. 2048-2054
-
-
Yoon, H.J.1
Feoktistova, A.2
Wolfe, B.A.3
Jennings, J.L.4
Link, A.J.5
Gould, K.L.6
-
20
-
-
0035067367
-
Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly
-
Seol, J. H., Shevchenko, A., Shevchenko, A., and Deshaies, R. J. (2001) Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly. Nat. Cell Biol. 3, 384-391
-
(2001)
Nat. Cell Biol.
, vol.3
, pp. 384-391
-
-
Seol, J.H.1
Shevchenko, A.2
Shevchenko, A.3
Deshaies, R.J.4
-
21
-
-
0030668324
-
SET1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes
-
Nislow, C., Ray, E., and Pillus, L. (1997) SET1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes. Mol. Biol. Cell 8, 2421-2436
-
(1997)
Mol. Biol. Cell
, vol.8
, pp. 2421-2436
-
-
Nislow, C.1
Ray, E.2
Pillus, L.3
-
22
-
-
0037126594
-
The S. cerevisiae Set1 complex includes an Ash2 homolog and methylates histone 3 lysine 4
-
Roguev, A., Schaft, D., Shevchenko, A., Pijnappel, W. W. M., Wilm, M., Aasland, R., and Stewart, A. F. (2001) The S. cerevisiae Set1 complex includes an Ash2 homolog and methylates histone 3 lysine 4. EMBO J. 20, 7137-7148
-
(2001)
EMBO J.
, vol.20
, pp. 7137-7148
-
-
Roguev, A.1
Schaft, D.2
Shevchenko, A.3
Pijnappel, W.W.M.4
Wilm, M.5
Aasland, R.6
Stewart, A.F.7
-
23
-
-
0037192780
-
COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression
-
Krogan, N. J., Dover, J., Khorrami, S., Greenblatt, J. F., Schneider, J., Johnston, M., and Shilatifard, A. (2002) COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression. J. Biol. Chem. 277, 10753-10755
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 10753-10755
-
-
Krogan, N.J.1
Dover, J.2
Khorrami, S.3
Greenblatt, J.F.4
Schneider, J.5
Johnston, M.6
Shilatifard, A.7
-
24
-
-
0036863611
-
A role for SSU72 in balancing RNA polymerase II transcription elongation and termination
-
Dichtl, B., Blank, D., Ohnacker, M., Friedlein, A., Roeder, D., Langen, H., and Keller, W. (2002) A role for SSU72 in balancing RNA polymerase II transcription elongation and termination. Mol. Cell 10, 1139-1150
-
(2002)
Mol. Cell
, vol.10
, pp. 1139-1150
-
-
Dichtl, B.1
Blank, D.2
Ohnacker, M.3
Friedlein, A.4
Roeder, D.5
Langen, H.6
Keller, W.7
-
25
-
-
0033619113
-
High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology
-
Krawchuk, M. D., and Wahls, W. P. (1999) High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology. Yeast 15, 1419-1427
-
(1999)
Yeast
, vol.15
, pp. 1419-1427
-
-
Krawchuk, M.D.1
Wahls, W.P.2
-
26
-
-
0033040524
-
Purification and biochemical properties of yeast SWI/SNF complex
-
Logie, C., and Peterson, C. L. (1999) Purification and biochemical properties of yeast SWI/SNF complex. Methods Enzymol. 304, 726-741
-
(1999)
Methods Enzymol.
, vol.304
, pp. 726-741
-
-
Logie, C.1
Peterson, C.L.2
-
27
-
-
0021355340
-
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
-
Wessel, D., and Flugge, U. I. (1984) A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal. Biochem. 138, 141-143
-
(1984)
Anal. Biochem.
, vol.138
, pp. 141-143
-
-
Wessel, D.1
Flugge, U.I.2
-
28
-
-
0029927505
-
Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels
-
Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996) Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal. Chem. 68, 850-858
-
(1996)
Anal. Chem.
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
29
-
-
10544244161
-
Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels
-
Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F., Wilm, M., Vorm, O., Mortensen, P., Shevchenko, A., Boucherie, H., and Mann, M. (1996) Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. U. S. A. 93, 14440-14445
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 14440-14445
-
-
Shevchenko, A.1
Jensen, O.N.2
Podtelejnikov, A.V.3
Sagliocco, F.4
Wilm, M.5
Vorm, O.6
Mortensen, P.7
Shevchenko, A.8
Boucherie, H.9
Mann, M.10
-
30
-
-
0037444512
-
Fast response proteomics by accelerated in-gel digestion of proteins
-
Havlis, J., Thomas, H., Sebela, M., and Shevchenko, A. (2003) Fast response proteomics by accelerated in-gel digestion of proteins. Anal. Chem. 75, 1300-1306
-
(2003)
Anal. Chem.
, vol.75
, pp. 1300-1306
-
-
Havlis, J.1
Thomas, H.2
Sebela, M.3
Shevchenko, A.4
-
31
-
-
0028861418
-
The PHD finger: Implications for chromatin-mediated transcriptional regulation
-
Aasland, R., Gibson, T. J., and Stewart, A. F. (1995) The PHD finger: Implications for chromatin-mediated transcriptional regulation. Trends Biochem. Sci. 20, 56-59
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 56-59
-
-
Aasland, R.1
Gibson, T.J.2
Stewart, A.F.3
-
32
-
-
0033786540
-
A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2
-
Gildea, J. J., Lopez, R., and Shearn, A. (2000) A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2. Genetics 156, 645-663
-
(2000)
Genetics
, vol.156
, pp. 645-663
-
-
Gildea, J.J.1
Lopez, R.2
Shearn, A.3
-
33
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes, A. L. (1994) The evolution of functionally novel proteins after gene duplication. Proc. R Soc. Lond. B Biol. Sci. 256, 119-124
-
(1994)
Proc. R Soc. Lond. B Biol. Sci.
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
34
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., and Conery, J. S. (2000) The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
35
-
-
0035893240
-
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
-
Briggs, S. D., Bryk, M., Strahl, B. D., Cheung, W. L., Davie, J. K., Dent, S. Y., Winston, F., and Allis, C. D. (2001) Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev. 15, 3286-3295
-
(2001)
Genes Dev.
, vol.15
, pp. 3286-3295
-
-
Briggs, S.D.1
Bryk, M.2
Strahl, B.D.3
Cheung, W.L.4
Davie, J.K.5
Dent, S.Y.6
Winston, F.7
Allis, C.D.8
-
36
-
-
0035839110
-
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
-
Noma, K., Allis, C. D., and Grewal, S. I. (2001) Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries. Science 293, 1150-1155
-
(2001)
Science
, vol.293
, pp. 1150-1155
-
-
Noma, K.1
Allis, C.D.2
Grewal, S.I.3
-
37
-
-
0037253223
-
Expanding the organismal scope of proteomics: Cross-species protein identification by mass spectrometry and its implications
-
Liska, A., and Shevchenko, A. (2002) Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications. Proteomics 3, 19-28
-
(2002)
Proteomics
, vol.3
, pp. 19-28
-
-
Liska, A.1
Shevchenko, A.2
-
38
-
-
0037382574
-
Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1
-
Wysocka, J., Myers, M. P., Laherty, C. D., Eisenman, R. N., and Herr, W. (2003) Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes Dev. 17, 896-911
-
(2003)
Genes Dev.
, vol.17
, pp. 896-911
-
-
Wysocka, J.1
Myers, M.P.2
Laherty, C.D.3
Eisenman, R.N.4
Herr, W.5
-
39
-
-
12244305527
-
Engineering the mouse genome with bacterial artificial chromosomes to create multipurpose alleles
-
Testa, G., Zhang, Y., Vintersten, K., Benes, V., Pijnappel, W. W., Chambers, I., Smith, A. J., Smith, A. G., and Steward, A. F. (2003) Engineering the mouse genome with bacterial artificial chromosomes to create multipurpose alleles. Nat. Biotechnol. 21, 443-447
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 443-447
-
-
Testa, G.1
Zhang, Y.2
Vintersten, K.3
Benes, V.4
Pijnappel, W.W.5
Chambers, I.6
Smith, A.J.7
Smith, A.G.8
Steward, A.F.9
|