메뉴 건너뛰기




Volumn 70, Issue 5, 2004, Pages 2836-2842

Prevalence of the Chloroflexi-related SAR202 bacterioplankton cluster throughout the mesopelagic zone and deep ocean

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; ENVIRONMENTAL IMPACT; RNA; SEDIMENTS; SOILS;

EID: 2442643112     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.5.2836-2842.2004     Document Type: Article
Times cited : (118)

References (49)
  • 1
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 2
    • 0036151745 scopus 로고    scopus 로고
    • Phylogenetic composition of bacterioplankton assemblages from the Artic Ocean
    • Bano, N., and J. T. Hollibaugh. 2002. Phylogenetic composition of bacterioplankton assemblages from the Artic Ocean. Appl. Environ. Microbiol. 68: 505-518.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 505-518
    • Bano, N.1    Hollibaugh, J.T.2
  • 3
    • 0028164002 scopus 로고
    • Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea
    • Carlson, C. A., H. W. Ducklow, and A. F. Michaels. 1994. Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea. Nature 371:405-408.
    • (1994) Nature , vol.371 , pp. 405-408
    • Carlson, C.A.1    Ducklow, H.W.2    Michaels, A.F.3
  • 4
    • 0031811165 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol
    • Chandler, D. P., F. J. Brockman, T. J. Bailey, and J. K. Fredrickson. 1998. Phylogenetic diversity of archaea and bacteria in a deep subsurface paleosol. Microb. Ecol. 36:37-50.
    • (1998) Microb. Ecol. , vol.36 , pp. 37-50
    • Chandler, D.P.1    Brockman, F.J.2    Bailey, T.J.3    Fredrickson, J.K.4
  • 5
    • 0024218962 scopus 로고
    • Major role of bacteria in biogeochemical fluxes in the ocean's interior
    • Cho, B. C., and F. Azam. 1988. Major role of bacteria in biogeochemical fluxes in the ocean's interior. Nature 332:441-443.
    • (1988) Nature , vol.332 , pp. 441-443
    • Cho, B.C.1    Azam, F.2
  • 6
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells
    • DeLong, E. F., G. S. Wickham, and N. R. Pace. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243:1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 7
  • 9
    • 0029798084 scopus 로고    scopus 로고
    • Differential sensitivity of 16S rRNA targeted oligonucleotide probes used for fluorescence in situ hybridization is a result of ribosomal higher order structure
    • Frischer, M. E., P. J. Floriani, and S. A. Nierzwicki-Bauer. 1996. Differential sensitivity of 16S rRNA targeted oligonucleotide probes used for fluorescence in situ hybridization is a result of ribosomal higher order structure. Can. J. Microbiol. 42:1061-1071.
    • (1996) Can. J. Microbiol. , vol.42 , pp. 1061-1071
    • Frischer, M.E.1    Floriani, P.J.2    Nierzwicki-Bauer, S.A.3
  • 10
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • Fuchs, B. M., G. Wallner, W. Beisker, I. Schwippl, W. Ludwig, and R. Amann. 1998. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64:4973-4982.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, I.4    Ludwig, W.5    Amann, R.6
  • 11
    • 0033855457 scopus 로고    scopus 로고
    • Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
    • Fuchs, B. M., F. O. Glöckner, J. Wulf, and R. Amann. 2000. Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 66: 3603-3607.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3603-3607
    • Fuchs, B.M.1    Glöckner, F.O.2    Wulf, J.3    Amann, R.4
  • 12
    • 0030619262 scopus 로고    scopus 로고
    • Widespread Archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences
    • Fuhrman, J. A., and A. A. Davis. 1997. Widespread Archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences. Mar. Ecol. Prog. Ser. 150:275-285.
    • (1997) Mar. Ecol. Prog. Ser. , vol.150 , pp. 275-285
    • Fuhrman, J.A.1    Davis, A.A.2
  • 13
    • 0029798513 scopus 로고    scopus 로고
    • 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria
    • Giovannoni, J. A., M. S. Rappe, K. L. Vergin, and N. L. Adar. 1996. 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria. Proc. Natl. Acad. Sci. USA 93:7979-7984.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7979-7984
    • Giovannoni, J.A.1    Rappe, M.S.2    Vergin, K.L.3    Adar, N.L.4
  • 14
    • 0000262823 scopus 로고    scopus 로고
    • Evolution, diversity, and molecular ecology of marine prokaryotes
    • D. L. Kirchman (ed.). John Wiley & Sons, Inc., New York, N.Y.
    • Giovannoni, S. J., and M. Rappé. 2000. Evolution, diversity, and molecular ecology of marine prokaryotes, p. 47-84. In D. L. Kirchman (ed.), Microbial ecology of the oceans. John Wiley & Sons, Inc., New York, N.Y.
    • (2000) Microbial Ecology of the Oceans , pp. 47-84
    • Giovannoni, S.J.1    Rappé, M.2
  • 15
    • 0029859085 scopus 로고    scopus 로고
    • An in situ hybridization protocol for detection and identification of planktonic bacteria
    • Glöckner, F. O., et al. 1996. An in situ hybridization protocol for detection and identification of planktonic bacteria. Syst. Appl. Microbiol. 19:403-406.
    • (1996) Syst. Appl. Microbiol. , vol.19 , pp. 403-406
    • Glöckner, F.O.1
  • 16
    • 0032541581 scopus 로고    scopus 로고
    • Deep ocean gradients in dissolved organic carbon
    • Hansell, D. A., and C. A. Carlson. 1998. Deep ocean gradients in dissolved organic carbon. Nature 395:263-266.
    • (1998) Nature , vol.395 , pp. 263-266
    • Hansell, D.A.1    Carlson, C.A.2
  • 17
    • 0035025766 scopus 로고    scopus 로고
    • Biogeochemistry of total organic carbon and nitrogen in the Sargasso Sea: Control by convective overturn
    • Hansell, D. A., and C. A. Carlson. 2001. Biogeochemistry of total organic carbon and nitrogen in the Sargasso Sea: control by convective overturn. Deep Sea Res. II Top. Stud. Oceanogr. 48:1649-1667.
    • (2001) Deep Sea Res. II Top. Stud. Oceanogr. , vol.48 , pp. 1649-1667
    • Hansell, D.A.1    Carlson, C.A.2
  • 19
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 20
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180:366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 22
    • 0001419515 scopus 로고
    • Downward flux of particulate organic matter in the ocean: A particle decomposition paradox
    • Karl, D. M., G. A. Knauer, and J. H. Martin. 1988. Downward flux of particulate organic matter in the ocean: a particle decomposition paradox. Nature 332:438-441.
    • (1988) Nature , vol.332 , pp. 438-441
    • Karl, D.M.1    Knauer, G.A.2    Martin, J.H.3
  • 23
    • 0033867755 scopus 로고    scopus 로고
    • Proposal of Oscillochloridaceae fam. nov. on the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oschillochloris trichoides in comparison with further new isolates
    • Keppen, O. L., T. P. Tourova, B. B. Kuznetsov, R. N. Ivanovsky, and V. M. Gorlenko. 2000. Proposal of Oscillochloridaceae fam. nov. on the basis of a phylogenetic analysis of the filamentous anoxygenic phototrophic bacteria, and emended description of Oscillochloris and Oschillochloris trichoides in comparison with further new isolates. Int. J. Syst. Evol. Microbiol. 50:1529-1537.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1529-1537
    • Keppen, O.L.1    Tourova, T.P.2    Kuznetsov, B.B.3    Ivanovsky, R.N.4    Gorlenko, V.M.5
  • 24
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (ed.). John Wiley & Sons, New York, N.Y.
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-147. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, New York, N.Y.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-147
    • Lane, D.J.1
  • 25
    • 0027134061 scopus 로고
    • Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria
    • Lee, S., C. Malone, and P. F. Kemp. 1993. Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria. Mar. Ecol. Prog. Ser. 101:193-201.
    • (1993) Mar. Ecol. Prog. Ser. , vol.101 , pp. 193-201
    • Lee, S.1    Malone, C.2    Kemp, P.F.3
  • 27
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymo-Gatell, X., Y.-T. Chien, J. Gossett, and S. Zinder. 1997. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276:1568-1571.
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymo-Gatell, X.1    Chien, Y.-T.2    Gossett, J.3    Zinder, S.4
  • 30
    • 0016290731 scopus 로고
    • A phototrophic gliding filamentous bacterium of hot springs, Chloroflexus aurantiacus, gen. and sp. nov.
    • Pierson, B. K., and R. W. Castenholz. 1974. A phototrophic gliding filamentous bacterium of hot springs, Chloroflexus aurantiacus, gen. and sp. nov. Arch. Microbiol. 100:5-24.
    • (1974) Arch. Microbiol. , vol.100 , pp. 5-24
    • Pierson, B.K.1    Castenholz, R.W.2
  • 31
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 32
    • 0033824875 scopus 로고    scopus 로고
    • Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
    • Rappé, M. S., K. L. Vergin, and S. J. Giovannoni. 2000. Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol. Ecol. 33:219-232.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 219-232
    • Rappé, M.S.1    Vergin, K.L.2    Giovannoni, S.J.3
  • 33
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappé, M. S., S. A. Connon, K. L. Vergin, and S. J. Giovannoni. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappé, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 36
    • 0342711280 scopus 로고    scopus 로고
    • Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification
    • Schonhuber, W., B. Fuchs, S. Juretschko, and R. I. Amann. 1997. Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification. Appl. Environ. Microbiol. 63:3268-3273.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3268-3273
    • Schonhuber, W.1    Fuchs, B.2    Juretschko, S.3    Amann, R.I.4
  • 37
    • 0035651020 scopus 로고    scopus 로고
    • In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: A novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I
    • Sekiguchi, Y., H. Takahashi, Y. Kamagata, A. Ohashi, and H. Harada. 2001. In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I. Appl. Environ. Microbiol. 67:5740-5749.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5740-5749
    • Sekiguchi, Y.1    Takahashi, H.2    Kamagata, Y.3    Ohashi, A.4    Harada, H.5
  • 38
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 39
    • 0035208354 scopus 로고    scopus 로고
    • Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
    • Suzuki, M. T., O. Béjà, L. T. Taylor, and E. F. DeLong. 2001. Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ. Microbiol. 3:323-331.
    • (2001) Environ. Microbiol. , vol.3 , pp. 323-331
    • Suzuki, M.T.1    Béjà, O.2    Taylor, L.T.3    DeLong, E.F.4
  • 41
    • 0028993549 scopus 로고
    • Nutrient limitation, microbial food webs, and biological C-pumps: Suggested interactions in a P-limited Mediterranean
    • Thingstad, T. F., and F. Rassoulzadegan. 1995. Nutrient limitation, microbial food webs, and biological C-pumps: suggested interactions in a P-limited Mediterranean. Mar. Ecol. Prog. Ser. 117:299-306.
    • (1995) Mar. Ecol. Prog. Ser. , vol.117 , pp. 299-306
    • Thingstad, T.F.1    Rassoulzadegan, F.2
  • 43
    • 0035344779 scopus 로고    scopus 로고
    • Streamlined method to analyze 16S rRNA gene done libraries
    • Vergin, K. L., M. S. Rappe, and S. J. Giovannoni. 2001. Streamlined method to analyze 16S rRNA gene done libraries. BioTechniques 30:938-940.
    • (2001) BioTechniques , vol.30 , pp. 938-940
    • Vergin, K.L.1    Rappe, M.S.2    Giovannoni, S.J.3
  • 45
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Wintzingerode, F. V., U. B. Gobel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Wintzingerode, F.V.1    Gobel, U.B.2    Stackebrandt, E.3
  • 46
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 47
    • 2442685740 scopus 로고    scopus 로고
    • M.S. thesis. Oregon State University, Corvallis
    • Wright, T. D. 1997. M.S. thesis. Oregon State University, Corvallis.
    • (1997)
    • Wright, T.D.1
  • 48
    • 0030988067 scopus 로고    scopus 로고
    • A novel δ-subdivision proteobacterial lineage from the lower ocean surface layer
    • Wright, T. D., K. L. Vergin, P. W. Boyd, and S. J. Giovannoni. 1997. A novel δ-subdivision proteobacterial lineage from the lower ocean surface layer. Appl. Environ. Microbiol. 63:1441-1448.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1441-1448
    • Wright, T.D.1    Vergin, K.L.2    Boyd, P.W.3    Giovannoni, S.J.4
  • 49
    • 0028108336 scopus 로고
    • Estimation of evolutionary distances between nucleotide sequences
    • Zharkikh, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 9:315-329.
    • (1994) J. Mol. Evol. , vol.9 , pp. 315-329
    • Zharkikh, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.