메뉴 건너뛰기




Volumn 63, Issue 4, 1997, Pages 1441-1448

A novel δ-subdivision proteobacterial lineage from the lower ocean surface layer

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

EID: 0030988067     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.4.1441-1448.1997     Document Type: Article
Times cited : (98)

References (35)
  • 1
    • 0029890507 scopus 로고    scopus 로고
    • In situ visualization of high genetic diversity in a natural microbial community
    • Amann, R., J. Snaidr, M. Wagner, W. Ludwig, and K.-H. Schleifer. 1996. In situ visualization of high genetic diversity in a natural microbial community. J. Bacteriol. 178:3496-3500.
    • (1996) J. Bacteriol. , vol.178 , pp. 3496-3500
    • Amann, R.1    Snaidr, J.2    Wagner, M.3    Ludwig, W.4    Schleifer, K.-H.5
  • 2
    • 0025919296 scopus 로고
    • Phylogenetic analysis of a natural marine hacterioplankton population by rRNA gene cloning and sequencing
    • Britschgi, T. B., and S. J. Giovannoni, 1991. Phylogenetic analysis of a natural marine hacterioplankton population by rRNA gene cloning and sequencing. Appl. Environ. Microbiol. 57:1707-1713.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1707-1713
    • Britschgi, T.B.1    Giovannoni, S.J.2
  • 3
    • 0028164002 scopus 로고
    • Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea
    • Carlson, C. A., H. W. Ducklow, and A. F. Michaels. 1994. Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea. Nature 371:405-408.
    • (1994) Nature , vol.371 , pp. 405-408
    • Carlson, C.A.1    Ducklow, H.W.2    Michaels, A.F.3
  • 5
    • 0024218962 scopus 로고
    • Major role of bacteria in biogeochemical fluxes in the ocean's interior
    • Cho, B. C., and F. Azam. 1988. Major role of bacteria in biogeochemical fluxes in the ocean's interior. Nature 332:441-143.
    • (1988) Nature , vol.332 , pp. 441-1143
    • Cho, B.C.1    Azam, F.2
  • 6
    • 0026755238 scopus 로고
    • Archaea in coastal marine bacterioplankton
    • DeLong, E. F. 1992. Archaea in coastal marine bacterioplankton. Proc. Natl. Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 7
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong, E. F., D. G. Franks, and A. L. Alldredge. 1993. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 38:924-934.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 924-934
    • DeLong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phytogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0003647321 scopus 로고
    • University of Washington, Seattle
    • Felsenstein, J. 1989. PHYLIP 3.5. University of Washington, Seattle.
    • (1989) PHYLIP 3.5
    • Felsenstein, J.1
  • 10
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • Felsenstein, J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-564.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-564
    • Felsenstein, J.1
  • 11
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 12
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 59:1294-1302.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 13
    • 0002508413 scopus 로고
    • The polymerase chain reaction
    • E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons. Inc., New York, N.Y.
    • Giovannoni, S. J. 1991. The polymerase chain reaction, p. 177-203. In E. Stackebrandt and M. Goodfellow (ed.), Sequencing and hybridization techniques in bacterial systematics. John Wiley & Sons. Inc., New York, N.Y.
    • (1991) Sequencing and Hybridization Techniques in Bacterial Systematics , pp. 177-203
    • Giovannoni, S.J.1
  • 14
  • 15
    • 0023958997 scopus 로고
    • Phylogenetic group-specific oligodeoxynucleolide probes for identification of single microbial cells
    • Giovannoni, S. J., E. F. DeLong, G. J. Olsen, and N. R. Pace. 1988. Phylogenetic group-specific oligodeoxynucleolide probes for identification of single microbial cells. J. Bacteriol. 170:720-726.
    • (1988) J. Bacteriol. , vol.170 , pp. 720-726
    • Giovannoni, S.J.1    DeLong, E.F.2    Olsen, G.J.3    Pace, N.R.4
  • 16
    • 0006174575 scopus 로고    scopus 로고
    • Ribosomal RNA and the evolution of bacterial diversity
    • D. M. Roberts, P. Sharp, G. Alderson, and M. Collins (ed.), Cambridge University Press, Cambridge, United Kingdom
    • Giovannoni, S. J., M. S. Rappé, D. Gordon, E. Urbach, M. Suzuki, and K. G. Field. 1996. Ribosomal RNA and the evolution of bacterial diversity, p. 63-85. In D. M. Roberts, P. Sharp, G. Alderson, and M. Collins (ed.), Evolution of microbial life. Cambridge University Press, Cambridge, United Kingdom.
    • (1996) Evolution of Microbial Life , pp. 63-85
    • Giovannoni, S.J.1    Rappé, M.S.2    Gordon, D.3    Urbach, E.4    Suzuki, M.5    Field, K.G.6
  • 17
    • 0029798513 scopus 로고    scopus 로고
    • 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria
    • Giovannoni, S. J., M. S. Rappé, K. L. Vergin, and N. L. Adair. 1996. 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria. Proc. Natl. Acad. Sci. USA 93:7979-7984.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7979-7984
    • Giovannoni, S.J.1    Rappé, M.S.2    Vergin, K.L.3    Adair, N.L.4
  • 18
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans
    • Gordon, D. A., and S. J. Giovannoni. 1996. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 62:1171-1177.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 19
    • 0021770785 scopus 로고
    • On the evolutionary descent of organisms and organelles: A global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA
    • Gray, M. W., D. Sankoff, and R. J. Cedergren. 1984. On the evolutionary descent of organisms and organelles: a global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA. Nucleic Acids Res. 2:5837-5852.
    • (1984) Nucleic Acids Res. , vol.2 , pp. 5837-5852
    • Gray, M.W.1    Sankoff, D.2    Cedergren, R.J.3
  • 20
    • 0029035937 scopus 로고
    • Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana
    • Haddad, H., F. Camacho, P. Durand, and S. C. Cary. 1995. Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl. Environ. Microbiol. 61:1679-1687.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1679-1687
    • Haddad, H.1    Camacho, F.2    Durand, P.3    Cary, S.C.4
  • 21
    • 0027338308 scopus 로고
    • Estimating the growth rate of slowly growing marine bacteria from RNA content
    • Kemp, P. F., S. Lee, and J. LaRoche. 1993. Estimating the growth rate of slowly growing marine bacteria from RNA content. Appl. Environ. Microbiol. 59:2594-2601.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2594-2601
    • Kemp, P.F.1    Lee, S.2    Laroche, J.3
  • 22
    • 0024226575 scopus 로고
    • Reverse transcriptase sequencing of ribosomal RNA for phylogenetic analysis
    • Lane, D. J., K. G. Field, G. J. Olsen, and N. R. Pace. 1988. Reverse transcriptase sequencing of ribosomal RNA for phylogenetic analysis. Methods Enzymol. 167:138-144.
    • (1988) Methods Enzymol. , vol.167 , pp. 138-144
    • Lane, D.J.1    Field, K.G.2    Olsen, G.J.3    Pace, N.R.4
  • 23
    • 0026379756 scopus 로고
    • Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization
    • Lee, S., and J. A. Fuhrman. 1991. Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization. Limnol. Oceanogr. 36:1277-1287.
    • (1991) Limnol. Oceanogr. , vol.36 , pp. 1277-1287
    • Lee, S.1    Fuhrman, J.A.2
  • 24
    • 0027134061 scopus 로고
    • Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria
    • Lee, S., C. Malone, and P. F. Kemp. 1993. Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria. Mar. Ecol. Prog. Ser. 101:193-201.
    • (1993) Mar. Ecol. Prog. Ser. , vol.101 , pp. 193-201
    • Lee, S.1    Malone, C.2    Kemp, P.F.3
  • 26
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T. D., T. B. Britschgi, R. L. Krest, and S. J. Giovannoni. 1995. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40:148-158.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 28
    • 0001621812 scopus 로고
    • Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater
    • Rappé, M. S., P. F. Kemp, and S. J. Giovannoni. 1995. Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater. J. Phycol. 31:979-988.
    • (1995) J. Phycol. , vol.31 , pp. 979-988
    • Rappé, M.S.1    Kemp, P.F.2    Giovannoni, S.J.3
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0025860931 scopus 로고
    • Analysis of marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., E. F. DeLong, and N. R. Pace. 1991. Analysis of marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173:4371-4378.
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 31
    • 0015527843 scopus 로고
    • Total synthesis of the structural gene for an alanine transfer RNA from yeast: Enzymatic joining of the chemically synthesized polynucleotides to form the DNA duplex representing nucleotide sequence 1-20
    • Sgaramella, V., and H. G. Khorana. 1972. Total synthesis of the structural gene for an alanine transfer RNA from yeast: enzymatic joining of the chemically synthesized polynucleotides to form the DNA duplex representing nucleotide sequence 1-20. J. Mol. Biol. 72:427-444.
    • (1972) J. Mol. Biol. , vol.72 , pp. 427-444
    • Sgaramella, V.1    Khorana, H.G.2
  • 32
    • 0028983986 scopus 로고
    • Distribution of the prochlorophyte Prochlorococcus in the central Pacific Ocean as measured by HPLC
    • Suzuki, K., N. Handa, H. Kiyosawa, and J. Ishizaka. 1995. Distribution of the prochlorophyte Prochlorococcus in the central Pacific Ocean as measured by HPLC. Limnol. Oceanogr. 40:983-989.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 983-989
    • Suzuki, K.1    Handa, N.2    Kiyosawa, H.3    Ishizaka, J.4
  • 33
    • 0029667164 scopus 로고    scopus 로고
    • Distribution of sulfate-reducing bacteria in stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments
    • Teske, A., C. Wawer, G. Muyzer, and N. B. Ramsing. 1996. Distribution of sulfate-reducing bacteria in stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62:1405-1415.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1405-1415
    • Teske, A.1    Wawer, C.2    Muyzer, G.3    Ramsing, N.B.4
  • 34
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 35
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.