-
1
-
-
0027122748
-
One thousand families for the molecular biologist
-
Chothia C (1992) One thousand families for the molecular biologist. Nature 357, 543-544.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
2
-
-
0029137828
-
The structure and evolution of α/β barrel proteins
-
Reardon D & Farber GK (1995) The structure and evolution of α/β barrel proteins. FASEB J 9, 497-503.
-
(1995)
FASEB J
, vol.9
, pp. 497-503
-
-
Reardon, D.1
Farber, G.K.2
-
3
-
-
0012118303
-
TIM barrel fold: Structural, functional and evolutionary characteristics in natural and designed molecules
-
Pujadas G & Palau J (1999) TIM barrel fold: structural, functional and evolutionary characteristics in natural and designed molecules. Biologia (Bratislava) 54, 231-254.
-
(1999)
Biologia (Bratislava)
, vol.54
, pp. 231-254
-
-
Pujadas, G.1
Palau, J.2
-
4
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano N, Orengo CA & Thornton JM (2002) One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J Mol Biol 321, 741-765.
-
(2002)
J Mol Biol
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
5
-
-
0017058392
-
Evolution of enzyme function and the development of catalytic efficiency
-
Albery WJ & Knowles JR (1976) Evolution of enzyme function and the development of catalytic efficiency. Biochemistry 15, 5631-5640.
-
(1976)
Biochemistry
, vol.15
, pp. 5631-5640
-
-
Albery, W.J.1
Knowles, J.R.2
-
7
-
-
49249144575
-
The most abundant protein in the world
-
Ellis RJ (1979) The most abundant protein in the world. Trends Biochem Sci 4, 241-244.
-
(1979)
Trends Biochem Sci
, vol.4
, pp. 241-244
-
-
Ellis, R.J.1
-
9
-
-
0030667789
-
Understanding enzyme superfamilies. Chemistry as the fundamental determinant in the evolution of new catalytic activities
-
Babbitt PC & Gerlt JA (1997) Understanding enzyme superfamilies. Chemistry as the fundamental determinant in the evolution of new catalytic activities. J Biol Chem 272, 30591-30594.
-
(1997)
J Biol Chem
, vol.272
, pp. 30591-30594
-
-
Babbitt, P.C.1
Gerlt, J.A.2
-
10
-
-
0001590330
-
The TIM barrel: The most frequently occuring folding motif in proteins
-
Brändén C-I (1991) The TIM barrel: the most frequently occuring folding motif in proteins. Curr Opin Struct Biol 1, 978-983.
-
(1991)
Curr Opin Struct Biol
, vol.1
, pp. 978-983
-
-
Brändén, C.-I.1
-
12
-
-
0037780207
-
8-barrels: Functional promiscuity produced by single substitutions in the enolase superfamily
-
8-barrels: functional promiscuity produced by single substitutions in the enolase superfamily. Biochemistry 42, 8387-8393.
-
(2003)
Biochemistry
, vol.42
, pp. 8387-8393
-
-
Schmidt, D.M.1
Mundorff, E.C.2
Dojka, M.3
Bermudez, E.4
Ness, J.E.5
Govindarajan, S.6
Babbitt, P.C.7
Minshull, J.8
Gerlt, J.A.9
-
13
-
-
2942586825
-
8-barrel protein, for modulation of the substrate specificity
-
8-barrel protein, for modulation of the substrate specificity. Biochemistry 43, 7413-7420.
-
(2004)
Biochemistry
, vol.43
, pp. 7413-7420
-
-
Cheon, Y.H.1
Park, H.S.2
Kim, J.H.3
Kim, Y.4
Kim, H.S.5
-
14
-
-
1642345454
-
8-barrel enzymes from different metabolic pathways: Sequence requirements and molecular analysis
-
8-barrel enzymes from different metabolic pathways: sequence requirements and molecular analysis. J Mol Biol 337, 871-879.
-
(2004)
J Mol Biol
, vol.337
, pp. 871-879
-
-
Leopoldseder, S.1
Claren, J.2
Jürgens, C.3
Sterner, R.4
-
15
-
-
0030864811
-
Combinatorial protein design: Strategies for screening protein libraries
-
Zhao H & Arnold FH (1997) Combinatorial protein design: strategies for screening protein libraries. Curr Opin Struct Biol 7, 480-485.
-
(1997)
Curr Opin Struct Biol
, vol.7
, pp. 480-485
-
-
Zhao, H.1
Arnold, F.H.2
-
16
-
-
0037071916
-
Phage display selects for amylases with improved low pH starch-binding
-
Verhaert RM, Beekwilder J, Olsthoorn R, van Duin J & Quax WJ (2002) Phage display selects for amylases with improved low pH starch-binding. J Biotechnol 96, 103-118.
-
(2002)
J Biotechnol
, vol.96
, pp. 103-118
-
-
Verhaert, R.M.1
Beekwilder, J.2
Olsthoorn, R.3
Van Duin, J.4
Quax, W.J.5
-
17
-
-
0037413687
-
Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization
-
Griffiths AD & Tawfik DS (2003) Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization. EMBO J 22, 24-35.
-
(2003)
EMBO J
, vol.22
, pp. 24-35
-
-
Griffiths, A.D.1
Tawfik, D.S.2
-
18
-
-
0034812976
-
A new plasmid display technology for the in vitro selection of functional phenotype-genotype linked proteins
-
Speight RE, Hart DJ, Sutherland JD & Blackburn JM (2001) A new plasmid display technology for the in vitro selection of functional phenotype-genotype linked proteins. Chem Biol 8, 951-965.
-
(2001)
Chem Biol
, vol.8
, pp. 951-965
-
-
Speight, R.E.1
Hart, D.J.2
Sutherland, J.D.3
Blackburn, J.M.4
-
19
-
-
0029048523
-
Phosphoribosyl anthranilate isomerase catalyzes a reversible Amadori reaction
-
Hommel U, Eberhard M & Kirschner K (1995) Phosphoribosyl anthranilate isomerase catalyzes a reversible Amadori reaction. Biochemistry 34, 5429-5439.
-
(1995)
Biochemistry
, vol.34
, pp. 5429-5439
-
-
Hommel, U.1
Eberhard, M.2
Kirschner, K.3
-
20
-
-
0029003832
-
Indoleglycerol phosphate synthase-phosphoribosyl anthranilate isomerase: Comparison of the bifunctional enzyme from Escherichia coli with engineered monofunctional domains
-
Eberhard M, Tsai-Pflugfelder M, Bolewska K, Hommel U & Kirschner K (1995) Indoleglycerol phosphate synthase-phosphoribosyl anthranilate isomerase: comparison of the bifunctional enzyme from Escherichia coli with engineered monofunctional domains. Biochemistry 34, 5419-5428.
-
(1995)
Biochemistry
, vol.34
, pp. 5419-5428
-
-
Eberhard, M.1
Tsai-Pflugfelder, M.2
Bolewska, K.3
Hommel, U.4
Kirschner, K.5
-
21
-
-
0024490818
-
Correct folding of circularly permuted variants of a βα barrel enzyme in vivo
-
Luger K, Hommel U, Herold M, Hofsteenge J & Kirschner K (1989) Correct folding of circularly permuted variants of a βα barrel enzyme in vivo. Science 243, 206-210.
-
(1989)
Science
, vol.243
, pp. 206-210
-
-
Luger, K.1
Hommel, U.2
Herold, M.3
Hofsteenge, J.4
Kirschner, K.5
-
22
-
-
0025373980
-
An 8-fold (βα)-barrel protein with redundant folding possibilities
-
Luger K, Szadkowski H & Kirschner K (1990) An 8-fold (βα)-barrel protein with redundant folding possibilities. Protein Eng 3, 249-258.
-
(1990)
Protein Eng
, vol.3
, pp. 249-258
-
-
Luger, K.1
Szadkowski, H.2
Kirschner, K.3
-
23
-
-
0026685018
-
Stable substructures of eightfold βα-barrel proteins: Fragment complementation of phosphoribosylanthranilate isomerase
-
Eder J & Kirschner K (1992) Stable substructures of eightfold βα-barrel proteins: fragment complementation of phosphoribosylanthranilate isomerase. Biochemistry 31, 3617-3625.
-
(1992)
Biochemistry
, vol.31
, pp. 3617-3625
-
-
Eder, J.1
Kirschner, K.2
-
24
-
-
0027087368
-
The importance of surface loops for stabilizing an eightfold βα barrel protein
-
Urfer R & Kirschner K (1992) The importance of surface loops for stabilizing an eightfold βα barrel protein. Protein Sci 1, 31-45.
-
(1992)
Protein Sci
, vol.1
, pp. 31-45
-
-
Urfer, R.1
Kirschner, K.2
-
25
-
-
2642565358
-
8-barrel enzyme into a split-protein sensor through directed evolution
-
8-barrel enzyme into a split-protein sensor through directed evolution. Chem Biol 11, 681-689.
-
(2004)
Chem Biol
, vol.11
, pp. 681-689
-
-
Tafelmeyer, P.1
Johnsson, N.2
Johnsson, K.3
-
26
-
-
0023714467
-
A short polypeptide marker sequence useful for recombinant protein identification and purification
-
Hopp TP, Prickett KS, Price VL, Libby RT, March CJ, Cerretti DP, Urdal DL & Conlon PJ (1988) A short polypeptide marker sequence useful for recombinant protein identification and purification. Bio/Technology 6, 1204-1210.
-
(1988)
Bio/Technology
, vol.6
, pp. 1204-1210
-
-
Hopp, T.P.1
Prickett, K.S.2
Price, V.L.3
Libby, R.T.4
March, C.J.5
Cerretti, D.P.6
Urdal, D.L.7
Conlon, P.J.8
-
29
-
-
0028084802
-
Two-stage selection of sequences from a random phage display library delineates both core residues and permitted structural range within an epitope
-
Miceli RM, DeGraaf ME & Fischer HD (1994) Two-stage selection of sequences from a random phage display library delineates both core residues and permitted structural range within an epitope. J Immunol Methods 167, 279-287.
-
(1994)
J Immunol Methods
, vol.167
, pp. 279-287
-
-
Miceli, R.M.1
DeGraaf, M.E.2
Fischer, H.D.3
-
30
-
-
33847659368
-
Identification of new tag sequences with differential and selective recognition properties for the anti-FLAG monoclonal antibodies M1, M2 and M5
-
Slootstra JW, Kuperus D, Plückthun A & Meloen RH (1997) Identification of new tag sequences with differential and selective recognition properties for the anti-FLAG monoclonal antibodies M1, M2 and M5. Mol Divers 2, 156-164.
-
(1997)
Mol Divers
, vol.2
, pp. 156-164
-
-
Slootstra, J.W.1
Kuperus, D.2
Plückthun, A.3
Meloen, R.H.4
-
31
-
-
1542297763
-
CIS display: In vitro selection of peptides from libraries of protein-DNA complexes
-
Odegrip R, Coomber D, Eldridge B, Hederer R, Kuhlman PA, Ullman C, FitzGerald K & McGregor D (2004) CIS display: in vitro selection of peptides from libraries of protein-DNA complexes. Proc Natl Acad Sci USA 101, 2806-2810.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 2806-2810
-
-
Odegrip, R.1
Coomber, D.2
Eldridge, B.3
Hederer, R.4
Kuhlman, P.A.5
Ullman, C.6
Fitzgerald, K.7
McGregor, D.8
-
32
-
-
0041765676
-
User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding libraries
-
Patrick WM, Firth AE & Blackburn JM (2003) User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding libraries. Protein Eng 16, 451-457.
-
(2003)
Protein Eng
, vol.16
, pp. 451-457
-
-
Patrick, W.M.1
Firth, A.E.2
Blackburn, J.M.3
-
33
-
-
0033060003
-
Identifying the structural boundaries of independent folding domains in the α subunit of tryptophan synthase, a β/α barrel protein
-
Zitzewitz JA, Gualfetti PJ, Perkons IA, Wasta SA & Matthews CR (1999) Identifying the structural boundaries of independent folding domains in the α subunit of tryptophan synthase, a β/α barrel protein. Protein Sci 8, 1200-1209.
-
(1999)
Protein Sci
, vol.8
, pp. 1200-1209
-
-
Zitzewitz, J.A.1
Gualfetti, P.J.2
Perkons, I.A.3
Wasta, S.A.4
Matthews, C.R.5
-
34
-
-
0028287276
-
8-barrel N-(5′-phosphoribosyl)anthranilate isomerase from Escherichia coli
-
8-barrel N-(5′- phosphoribosyl)anthranilate isomerase from Escherichia coli. Biochemistry 33, 6350-6355.
-
(1994)
Biochemistry
, vol.33
, pp. 6350-6355
-
-
Jasanoff, A.1
Davis, B.2
Fersht, A.R.3
-
35
-
-
0026584311
-
Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: Indole-glycerolphosphate synthase from Escherichia coli refined at 2.0 Å resolution
-
Wilmanns M, Priestle JP, Niermann T & Jansonius JN (1992) Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: indole-glycerolphosphate synthase from Escherichia coli refined at 2.0 Å resolution. J Mol Biol 223, 477-507.
-
(1992)
J Mol Biol
, vol.223
, pp. 477-507
-
-
Wilmanns, M.1
Priestle, J.P.2
Niermann, T.3
Jansonius, J.N.4
-
36
-
-
0034923923
-
Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
-
Gerlt JA & Babbitt PC (2001) Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies. Annu Rev Biochem 70, 209-246.
-
(2001)
Annu Rev Biochem
, vol.70
, pp. 209-246
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
40
-
-
0034284955
-
Structural evidence for evolution of the β/α barrel scaffold by gene duplication and fusion
-
Lang D, Thoma R, Henn-Sax M, Sterner R & Wilmanns M (2000) Structural evidence for evolution of the β/α barrel scaffold by gene duplication and fusion. Science 289, 1546-1550.
-
(2000)
Science
, vol.289
, pp. 1546-1550
-
-
Lang, D.1
Thoma, R.2
Henn-Sax, M.3
Sterner, R.4
Wilmanns, M.5
-
44
-
-
0033520098
-
Molecular dissection of the folding mechanism of the α subunit of tryptophan synthase: An amino-terminal autonomous folding unit controls several rate-limiting steps in the folding of a single domain protein
-
Zitzewitz JA & Matthews CR (1999) Molecular dissection of the folding mechanism of the α subunit of tryptophan synthase: an amino-terminal autonomous folding unit controls several rate-limiting steps in the folding of a single domain protein. Biochemistry 38, 10205-10214.
-
(1999)
Biochemistry
, vol.38
, pp. 10205-10214
-
-
Zitzewitz, J.A.1
Matthews, C.R.2
-
46
-
-
0037116603
-
A common evolutionary origin of two elementary enzyme folds
-
Höcker B, Schmidt S & Sterner R (2002) A common evolutionary origin of two elementary enzyme folds. FEBS Lett 510, 133-135.
-
(2002)
FEBS Lett
, vol.510
, pp. 133-135
-
-
Höcker, B.1
Schmidt, S.2
Sterner, R.3
-
47
-
-
3242882336
-
AdoMet radical proteins-from structure to evolution-alignment of divergent protein sequences reveals strong secondary structure element conservation
-
Nicolet Y & Drennan CL (2004) AdoMet radical proteins-from structure to evolution-alignment of divergent protein sequences reveals strong secondary structure element conservation. Nucleic Acids Res 32, 4015-4025.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4015-4025
-
-
Nicolet, Y.1
Drennan, C.L.2
-
48
-
-
0025326334
-
Gene splicing by overlap extension: Tailor-made genes using the polymerase chain reaction
-
Horton RM, Cai ZL, Ho SN & Pease LR (1990) Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction. Biotechniques 8, 528-535.
-
(1990)
Biotechniques
, vol.8
, pp. 528-535
-
-
Horton, R.M.1
Cai, Z.L.2
Ho, S.N.3
Pease, L.R.4
-
49
-
-
0034628501
-
Directed evolution of new catalytic activity using the α/β-barrel scaffold
-
Altamirano MM, Blackburn JM, Aguayo C & Fersht AR (2000) Directed evolution of new catalytic activity using the α/β-barrel scaffold. Nature 403, 617-622.
-
(2000)
Nature
, vol.403
, pp. 617-622
-
-
Altamirano, M.M.1
Blackburn, J.M.2
Aguayo, C.3
Fersht, A.R.4
-
50
-
-
0028871804
-
How to measure and predict the molar absorption coefficient of a protein
-
Pace CN, Vajdos F, Fee L, Grimsley G & Gray T (1995) How to measure and predict the molar absorption coefficient of a protein. Protein Sci 4, 2411-2423.
-
(1995)
Protein Sci
, vol.4
, pp. 2411-2423
-
-
Pace, C.N.1
Vajdos, F.2
Fee, L.3
Grimsley, G.4
Gray, T.5
|