-
1
-
-
0035282866
-
Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: Functional characterization using new analysis and information visualization methods
-
Sofia,H.J., Chen,G., Hetzler,B.G., Reyes-Spindola,J.F. and Miller,N.E. (2001) Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Nucleic Acids Res., 29, 1097-1106.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1097-1106
-
-
Sofia, H.J.1
Chen, G.2
Hetzler, B.G.3
Reyes-Spindola, J.F.4
Miller, N.E.5
-
2
-
-
0034792676
-
Radical mechanisms of S-adenosylmethionine-dependent enzymes
-
Frey,P.A. and Booker,S.J. (2001) Radical mechanisms of S-adenosylmethionine-dependent enzymes. Adv. Protein Chem., 58, 1-45.
-
(2001)
Adv. Protein Chem.
, vol.58
, pp. 1-45
-
-
Frey, P.A.1
Booker, S.J.2
-
3
-
-
0033969775
-
Mutagenesis of the proposed iron-sulfur cluster binding ligands in Escherichia coli biotin synthase
-
Hewitson,K.S., Baldwin,J.E., Shaw,N.M. and Roach,P.L. (2000) Mutagenesis of the proposed iron-sulfur cluster binding ligands in Escherichia coli biotin synthase. FEBS Lett., 466, 372-376.
-
(2000)
FEBS Lett.
, vol.466
, pp. 372-376
-
-
Hewitson, K.S.1
Baldwin, J.E.2
Shaw, N.M.3
Roach, P.L.4
-
4
-
-
0036366482
-
The iron-sulfur center of biotin synthase: Site-directed mutants
-
Hewitson,K.S., Ollagnier-de Choudens,S., Sanakis,Y., Shaw,N.M., Baldwin,J.E., Munck,E., Roach,P.L. and Fontecave,M. (2002) The iron-sulfur center of biotin synthase: site-directed mutants. J. Biol. Inorg. Chem., 7, 83-93.
-
(2002)
J. Biol. Inorg. Chem.
, vol.7
, pp. 83-93
-
-
Hewitson, K.S.1
Ollagnier-de Choudens, S.2
Sanakis, Y.3
Shaw, N.M.4
Baldwin, J.E.5
Munck, E.6
Roach, P.L.7
Fontecave, M.8
-
5
-
-
0037072870
-
Oxygen-independent coproporphyrinogen-III oxidase HemN from Escherichia coli
-
Layer,G., Verfurth,K., Mahlitz,E. and Jahn,D. (2002) Oxygen-independent coproporphyrinogen-III oxidase HemN from Escherichia coli. J. Biol. Chem., 277, 34136-34142.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34136-34142
-
-
Layer, G.1
Verfurth, K.2
Mahlitz, E.3
Jahn, D.4
-
6
-
-
0034717328
-
The activating component of the anaerobic ribonucleotide reductase from Escherichia coli. An iron-sulfur center with only three cysteines
-
Tamarit,J., Gerez,C., Meier,C., Mulliez,E., Trautwein,A. and Fontecave,M. (2000) The activating component of the anaerobic ribonucleotide reductase from Escherichia coli. An iron-sulfur center with only three cysteines. J. Biol. Chem., 275, 15669-15675.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 15669-15675
-
-
Tamarit, J.1
Gerez, C.2
Meier, C.3
Mulliez, E.4
Trautwein, A.5
Fontecave, M.6
-
7
-
-
0035478116
-
Adenosylmethionine as a source of 5′-deoxyadenosyl radicals
-
Fontecave,M., Mulliez,E. and Ollagnier-de-Choudens,S. (2001) Adenosylmethionine as a source of 5′-deoxyadenosyl radicals. Curr. Opin. Chem. Biol., 5, 506-511.
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 506-511
-
-
Fontecave, M.1
Mulliez, E.2
Ollagnier-de-Choudens, S.3
-
8
-
-
0034841061
-
Adenosylmethionine-dependent iron-sulfur enzymes: Versatile clusters in a radical new role
-
Cheek,J. and Broderick,J.B. (2001) Adenosylmethionine-dependent iron-sulfur enzymes: versatile clusters in a radical new role. J. Biol. Inorg. Chem., 6, 209-226.
-
(2001)
J. Biol. Inorg. Chem.
, vol.6
, pp. 209-226
-
-
Cheek, J.1
Broderick, J.B.2
-
9
-
-
0037399004
-
The generation of 5′-deoxyadenosyl radicals by adenosylmethionine-dependent radical enzymes
-
Jarrett,J.T. (2003) The generation of 5′-deoxyadenosyl radicals by adenosylmethionine-dependent radical enzymes. Curr. Opin. Chem. Biol., 7, 174-182.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 174-182
-
-
Jarrett, J.T.1
-
10
-
-
0346727529
-
Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme
-
Berkovitch,F., Nicolet,Y., Wan,J.T., Jarrett,J.T. and Drennan,C.L. (2004) Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme. Science, 303, 76-79.
-
(2004)
Science
, vol.303
, pp. 76-79
-
-
Berkovitch, F.1
Nicolet, Y.2
Wan, J.T.3
Jarrett, J.T.4
Drennan, C.L.5
-
11
-
-
0347504850
-
Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of radical SAM enzymes
-
Layer,G., Moser,J., Heinz,D.W., Jahn,D. and Schubert,W.D. (2003) Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of radical SAM enzymes. EMBO J., 22, 6214-6224.
-
(2003)
EMBO J.
, vol.22
, pp. 6214-6224
-
-
Layer, G.1
Moser, J.2
Heinz, D.W.3
Jahn, D.4
Schubert, W.D.5
-
12
-
-
0037396345
-
Evolution of function in (beta/ alpha)8-barrel enzymes
-
Gerlt,J.A. and Raushel,F.M. (2003) Evolution of function in (beta/ alpha)8-barrel enzymes. Curr. Opin. Chem. Biol., 7, 252-264.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 252-264
-
-
Gerlt, J.A.1
Raushel, F.M.2
-
13
-
-
0347625651
-
Identification of the 7,8-didemethyl-8-hydroxyz-5-deazariboflavin synthase required for coenzyme F420 biosythesis
-
Graham,D.E., Xu,H.M. and White,R.H. (2003) Identification of the 7,8-didemethyl-8-hydroxyz-5-deazariboflavin synthase required for coenzyme F420 biosythesis. Arch. Microbiol., 180, 455-464.
-
(2003)
Arch. Microbiol.
, vol.180
, pp. 455-464
-
-
Graham, D.E.1
Xu, H.M.2
White, R.H.3
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
0043122944
-
ExPASy: The proteomics server for in-depth protein knowledge and analysis
-
Gasteiger,E., Gattiker,A., Hoogland,C., Ivanyi,I., Appel,R.D. and Bairoch,A. (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res., 31, 3784-3788.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
16
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
17
-
-
0003932768
-
-
1st edn. W.H. Freeman and Company, New York, NY
-
Creighton,T.E. (1984) Proteins, 1st edn. W.H. Freeman and Company, New York, NY.
-
(1984)
Proteins
-
-
Creighton, T.E.1
-
18
-
-
0002906346
-
-
Rossmann,M.G. and Arnold,E. (eds), Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Kleywegt,G.J., Zou,J.Y.. Kjeldgaard,M. and Jones,T.A. (2001) Around O. In Rossmann,M.G. and Arnold,E. (eds), International Tables for Crystallography, Volume F. Crystallography of Biological Macromolecules. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 353-367.
-
(2001)
International Tables for Crystallography, Volume F. Crystallography of Biological Macromolecules
, pp. 353-367
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Kjeldgaard, M.3
Jones, T.A.4
Around, O.5
-
19
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
20
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
Gouet,P., Courcelle,E., Stuart,D.I. and Metoz,F. (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics, 15, 305-308.
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
21
-
-
0043123208
-
ESPript/ENDscript: Extracting and rendering sequence and 3D information
-
Gouet,P., Robert,X. and Courcelle,E. (2003) ESPript/ENDscript: extracting and rendering sequence and 3D information. Nucleic Acids Res., 31, 3320-3323.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3320-3323
-
-
Gouet, P.1
Robert, X.2
Courcelle, E.3
-
22
-
-
0037174377
-
An anchoring role for FeS clusters: Chelation of the amino acid moiety of S-adenosylmethionine to the unique iron site of the [4Fe-4S] cluster of pyruvate formate-lyase activating enzyme
-
Walsby,C.J., Ortillo,D., Broderick,W.E., Broderick,J.B. and Hoffman,B.M. (2002) An anchoring role for FeS clusters: chelation of the amino acid moiety of S-adenosylmethionine to the unique iron site of the [4Fe-4S] cluster of pyruvate formate-lyase activating enzyme. J. Am. Chem. Soc., 124, 11270-11271.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 11270-11271
-
-
Walsby, C.J.1
Ortillo, D.2
Broderick, W.E.3
Broderick, J.B.4
Hoffman, B.M.5
-
23
-
-
0038374971
-
Many paths to methyltransfer: A chronicle of convergence
-
Schubert,H.L., Blumenthal,R.M. and Cheng,X. (2003) Many paths to methyltransfer: a chronicle of convergence. Trends Biochem. Sci., 28, 329-335.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 329-335
-
-
Schubert, H.L.1
Blumenthal, R.M.2
Cheng, X.3
-
24
-
-
0030610719
-
AlF3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP
-
Xu,Y.W., Morera,S., Janin,J. and Cherfils,J. (1997) AlF3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP. Proc. Natl Acad. Sci. USA, 94, 3579-3583.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 3579-3583
-
-
Xu, Y.W.1
Morera, S.2
Janin, J.3
Cherfils, J.4
-
25
-
-
0037082119
-
Ribonucleotide reductases: The evolution of allosteric regulation
-
Reichard,P. (2002) Ribonucleotide reductases: the evolution of allosteric regulation. Arch. Biochem. Biophys., 397, 149-155.
-
(2002)
Arch. Biochem. Biophys.
, vol.397
, pp. 149-155
-
-
Reichard, P.1
-
26
-
-
0035793708
-
Tiny TIM: A small, tetrameric, hyperthermostable triosephosphate isomerase
-
Walden,H., Bell,G.S., Russell,R.J., Siebers,B., Hensel,R., Taylor,G.L. and Taylor,G.L. (2001) Tiny TIM: a small, tetrameric, hyperthermostable triosephosphate isomerase. J. Mol. Biol., 306, 745-757.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 745-757
-
-
Walden, H.1
Bell, G.S.2
Russell, R.J.3
Siebers, B.4
Hensel, R.5
Taylor, G.L.6
Taylor, G.L.7
-
27
-
-
0031980567
-
Biochemical and genetic characterization of benzylsuccinate synthase from Thauera aromatica: A new glycyl radical enzyme catalysing the first step in anaerobic toluene metabolism
-
Leuthner,B., Leutwein,C., Schulz,H., Horth,P., Haehnel,W., Schiltz,E., Schagger,H. and Heider,J. (1998) Biochemical and genetic characterization of benzylsuccinate synthase from Thauera aromatica: a new glycyl radical enzyme catalysing the first step in anaerobic toluene metabolism. Mol. Microbiol., 28, 615-628.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 615-628
-
-
Leuthner, B.1
Leutwein, C.2
Schulz, H.3
Horth, P.4
Haehnel, W.5
Schiltz, E.6
Schagger, H.7
Heider, J.8
-
28
-
-
0000062832
-
Pyruvate formate lyase is structurally homologous to type I ribonucleotide reductase
-
Leppanen,V.M., Merckel,M.C., Ollis,D.L., Wong,K.K., Kozarich,J.W. and Goldman,A. (1999) Pyruvate formate lyase is structurally homologous to type I ribonucleotide reductase. Structure, 7, 733-744.
-
(1999)
Structure
, vol.7
, pp. 733-744
-
-
Leppanen, V.M.1
Merckel, M.C.2
Ollis, D.L.3
Wong, K.K.4
Kozarich, J.W.5
Goldman, A.6
-
29
-
-
0032851377
-
Structure and mechanism of the glycyl radical enzyme pyruvate formate-lyase
-
Becker,A., Fritz-Wolf,K., Kabsch,W., Knappe,J., Schultz,S. and Volker Wagner,A.F. (1999) Structure and mechanism of the glycyl radical enzyme pyruvate formate-lyase. Nature Struct. Biol., 6, 969-975.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 969-975
-
-
Becker, A.1
Fritz-Wolf, K.2
Kabsch, W.3
Knappe, J.4
Schultz, S.5
Volker Wagner, A.F.6
-
30
-
-
0033525599
-
A glycyl radical site in the crystal structure of a class III ribonucleotide reductase
-
Logan,D.T., Andersson,J., Sjöberg,B.-M. and Nordlund,P. (1999) A glycyl radical site in the crystal structure of a class III ribonucleotide reductase. Science, 283, 1499-1504.
-
(1999)
Science
, vol.283
, pp. 1499-1504
-
-
Logan, D.T.1
Andersson, J.2
Sjöberg, B.-M.3
Nordlund, P.4
-
31
-
-
0034284955
-
Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion
-
Lang,D., Thoma,R., Henn-Sax,M., Sterner,R. and Wilmanns,M. (2000) Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion. Science, 289, 1546-1550.
-
(2000)
Science
, vol.289
, pp. 1546-1550
-
-
Lang, D.1
Thoma, R.2
Henn-Sax, M.3
Sterner, R.4
Wilmanns, M.5
-
32
-
-
0034746909
-
Dissection of a (betaalpha)8-barrel enzyme into two folded halves
-
Hocker,B., Beismann-Driemeyer,S., Hettwer,S., Lustig,A. and Sterner,R. (2001) Dissection of a (betaalpha)8-barrel enzyme into two folded halves. Nature Struct. Biol., 8, 32-36.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 32-36
-
-
Hocker, B.1
Beismann-Driemeyer, S.2
Hettwer, S.3
Lustig, A.4
Sterner, R.5
-
33
-
-
0037116603
-
A common evolutionary origin of two elementary enzyme folds
-
Hocker,B., Schmidt,S. and Sterner,R. (2002) A common evolutionary origin of two elementary enzyme folds. FEBS Lett., 510, 133-135.
-
(2002)
FEBS Lett.
, vol.510
, pp. 133-135
-
-
Hocker, B.1
Schmidt, S.2
Sterner, R.3
-
34
-
-
0036051516
-
Deoxyribonucleotide synthesis in anaerobic microorganisms: The class III ribonucleotide reductase
-
Fontecave,M., Mulliez,E. and Logan,D.T. (2002) Deoxyribonucleotide synthesis in anaerobic microorganisms: the class III ribonucleotide reductase. Prog. Nucleic Acid Res. Mol. Biol., 72, 95-127.
-
(2002)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.72
, pp. 95-127
-
-
Fontecave, M.1
Mulliez, E.2
Logan, D.T.3
-
35
-
-
0035823567
-
The anaerobic ribonucleotide reductase from Lactococcus lactis. Interactions between the two proteins NrdD and NrdG
-
Torrents,E., Eliasson,R., Wolpher,H., Graslund,A. and Reichard,P. (2001) The anaerobic ribonucleotide reductase from Lactococcus lactis. Interactions between the two proteins NrdD and NrdG. J. Biol. Chem., 276, 33488-33494.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 33488-33494
-
-
Torrents, E.1
Eliasson, R.2
Wolpher, H.3
Graslund, A.4
Reichard, P.5
-
36
-
-
0032579314
-
Structural and mechanistic comparison of prokaryotic and eukaryotic phosphoinositide-specific phospholipases C
-
Heinz,D.W., Essen,L.O. and Williams,R.L. (1998) Structural and mechanistic comparison of prokaryotic and eukaryotic phosphoinositide-specific phospholipases C. J. Mol. Biol., 275, 635-650.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 635-650
-
-
Heinz, D.W.1
Essen, L.O.2
Williams, R.L.3
|