DNA chips for detection of bacterial pathogens

Biologia - Section Cellular and Molecular Biology

Volumn 60, Issue 3, 2005, Pages 239-249

  Blaškovič, Dušan ^a   Barák, Imrich ^a  

^a INSTITUTE OF CHEMISTRY   (Slovakia)

Author keywords

Detection; DNA chips; Pathogens

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 22544432546     PISSN: 13356399     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (62)

1. ANDERSON, R.C., SU, X., BOGDAN, G.J. & FENTON, J. 2000. Nucleic Acids Res. 28: E60.
2. BAGGERLY, K., MITRA, R., GRIER, R., MEDHANE, D., LOZANO, G. & KAPOOR, M. 2004. Anal. Chim. Acta 506: 117-125.
3. BEKAL, S., BROUSSEAU, R., MASSON, L., PREFONTAINE, G., FAIRBROTHER, J. & HAREL, J. 2003. J. Clin. Microbiol. 41: 2113-2125.
4. BENSON, D.A., KARSCH-MIZRACHI, I., LIPMAN, D.J., OSTELL, J. & WHEELER, D.L. 2004. Nucleic Acids Res. 32: D23-26.
5. BLAŠKOVIČ, D. & BARÁK, I. 2005. FEMS Microbiol. Lett. 243: 473-478.
6. BROEKHUIJSEN, M., LARSSON, P., JOHANSSON, A., BYSTROM, M., ERIKSSON, U., LARSSON, E., PRIOR, R.G., SJOSTEDT, A., TITBALL, R.W. & FORSMAN, M. 2003. J. Clin. Microbiol. 41: 2924-2931.
7. BURNS, M.A., JOHNSON, B.N., BRAHMASANDRA, S.N., HANDIQUE, K., WEBSTER, J.R., KRISHNAN, M., SAMMARCO, T.S., MAN, P.M., JONES, D., HELDSINGER, D., MASTRANGELO, C.H. & BURKE, D.T. 1998. Science 282: 484-487.
8. CALL, D.R., BROCKMAN, F.J. & CHANDLER, D.P. 2001a. Int. J. Food Microbiol. 67: 71-80.
9. CALL, D.R., CHANDLER, D.P. & BROCKMAN, F. 2001b. Biotechniques 30: 368-379.
10. CHANDLER, D. P. 2002. Curr. Issues Mol. Biol. 4: 19-32.
11. CHIZHIKOV, V., RASOOLY, A., CHUMAKOV, K. & LEVY, D.D. 2001. Appl. Environ. Microbiol. 67: 3258-3263.
12. CHO, J.C. & TIEDJE, J.M. 2001. Appl. Environ. Microbiol. 67: 3677-3682.
13. DENEF, V.J., PARK, J., RODRIGUES, J.L., TSOI, T.V., HASHSHAM, SA. & TIEDJE, J.M. 2003. Environ. Microbiol. 5: 933-943.
14. DIEHL, F., BECKMANN, B., KELLNER, N., HAUSER, N.C., DIEHL, S. & HOHEISEL, J.D. 2002. Nucleic Acids Res. 30: E79.
15. DUNBAR, S.A., VANDER ZEE, C.A., OLIVER, K.G., KAREM, K.L. & JACOBSON, J.W. 2003. J. Microbiol. Methods 53: 245-252.
16. EDMAN, C.F., RAYMOND, D.E., WU, D.J., TU, E., SOSNOWSKI, R.G., BUTLER, W.F., NERENBERG, M. & HELLER, M.J. 1997. Nucleic Acids Res. 25: 4907-4914.
17. EPSTEIN, J.R. & WALT, D.R. 2003. Chem. Soc. Rev. 32: 203-214.
18. EPSTEIN, J.R., LEE, M. & WALT, D.R. 2002. Anal. Chem. 74: 1836-1840.
19. FARKAS, D.H. 2001. Clin. Chem. 47: 1871-1872.
20. FUKUSHIMA, M., KAKINUMA, K., HAYASHI, H., NAGAI, H., ITO, K. & KAWAGUCHI, R. 2003. J. Clin. Microbiol. 41: 2605-2615.
21. GINGERAS, T.R., GHANDOUR, G., WANG, E., BERNO, A., SMALL, P.M., DROBNIEWSKI, F., ALLAND, D., DESMOND, E., HOLODNIY, M. & DRENKOW, J. 1998. Genome Res. 8: 435-448.
22. GUSCHIN, D.Y., MOBARRY, B.K., PROUDNIKOV, D., STAHL, D.A., RITTMANN, B.E. & MIRZABEKOV, A.D. 1997. Appl. Environ. Microbiol. 63: 2397-2402.
23. HENEGARIU, O., BRAY-WARD, P. & WARD, D.C. 2000. Nat. Biotechnol. 18: 345-348.
24. HUGHES, T.R., MAO, M., JONES, A.R., BURCHARD, J., MARTON, M.J., SHANNON, K.W., LEFKOWITZ, S.M., ZIMAN, M., SCHELTER, J.M., MEYER, M.R., KOBAYASHI, S., DAVIS, C., DAI, H., HE, Y.D., STEPHANIANTS, S.B., CAVET, G., WALKER, W.L., WEST, A., COFFEY, E., SHOEMAKER, D.D., STOUGHTON, R., BLANCHARD, A.P., FRIEND, S.H. & LINSLEY, P.S. 2001. Nat. Biotechnol. 19: 342-347.
25. IVANOV, I.B., KHRAPKO, K.R., CHERNOV, B.K., KHORLIN, A.A., LYSOV, Y.U.P., FLORENTIEV, V.L. & MIRZABEKOV, A.D. 1991. Nucleic Acids Symp. Ser. 24: 189-190.
26. KAKINUMA, K., FUKUSHIMA, M. & KAWAGUCHI, R. 2003. Biotechnol. Bioeng. 83: 721-728.
27. KERAMAS, G., BANG, D.D., LUND, M., MADSEN, M., BUNKENBORG, H., TELLEMAN, P. & CHRISTENSEN, C.B. 2004. J. Clin. Microbiol. 42: 3985-3991.
28. KERAMAS, G., BANG, D.D., LUND, M., MADSEN, M., RASMUSSEN, S.E., BUNKENBORG, H., TELLEMAN, P. & CHRISTENSEN, C.B. 2003. Mol. Cell. Probes 17: 187-196.
29. KHRAPKO, K.R., LYSOV, Y.U.P., KHORLIN, A.A., IVANOV, I.B., YERSHOV, G.M., VASILENKO, S.K., FLORENTIEV, V.L. & MIRZABEKOV, A.D. 1991. DNA Seq. 1: 375-388.
30. KLAASSEN, C.H., PRINSEN, C.F., DE VALK, H.A., HORREVORTS, A.M., JEUNINK, M.A. & THUNNISSEN, F.B. 2004. J. Clin. Microbiol. 42: 2152-2160.
31. KRAWIEC, S. & RILEY, M. 1990. Microbiol. Rev. 54: 502-539.
32. LAASSRI, M., CHIZHIKOV, V., MIKHEEV, M., SHCHELKUNOV, S. & CHUMAKOV, K. 2003. J. Virol. Methods 112: 67-78.
33. LINDROOS, K., LILJEDAHL, U., RAITIO, M. & SYVANEN, A.C. 2001. Nucleic Acids Res. 29: E69.
34. LIPSHUTZ, R.J., FODOR, S.P., GINGERAS, T.R. & LOCKHART, D.J. 1999. Nat. Genet. 21 (Suppl. 1): 20-24.
35. LIPSHUTZ, R.J., MORRIS, D., CHEE, M., HUBBELL, E., KOZAL, M.J., SHAH, N., SHEN, N., YANG, R. & FODOR, S.P. 1995. Biotechniques 19: 442-447.
36. LIU, R.H., YANG, J., LENIGK, R., BONANNO, J. & GRODZINSKI, P. 2004. Anal. Chem. 76: 1824-1831.
37. LIU, W.T., MIRZABEKOV, A.D. & STAHL, D.A. 2001. Environ. Microbiol. 3: 619-629.
38. LOCKHART, D.J., DONG, H., BYRNE, M.C., FOLLETTIE, M.T., GALLO, M.V., CHEE, M.S., MITTMANN, M., WANG, C., KOBAYASHI, M., HORTON, H. & BROWN, E.L. 1996. Nat. Biotechnol. 14: 1675-1680.
39. MARCHESI, J.R., SATO, T., WEIGHTMAN, A.J., MARTIN, T.A., FRY, J.C., HIOM, S.J., DYMOCK, D. & WADE, W.G. 1998. Appl. Environ. Microbiol. 64: 795-799.
40. MIRZABEKOV, A. D. 1994. Trends Biotechnol. 12: 27-32.
41. PEPLIES, J., LAU, S.C., PERNTHALER, J., AMANN, R. & GLOCKNER, F.O. 2004. Environ. Microbiol. 6: 638-645.
42. RELOGIO, A., SCHWAGER, C., RICHTER, A., ANSORGE, W. & VALCARCEL, J. 2002. Nucleic Acids Res. 30: E51.
43. REYES-LOPEZ, M.A., MENDEZ-TENORIO, A., MALDONADO-RODRIGUEZ, R., DOKTYCZ, M.J., FLEMING, J.T. & BEATTIE, K.L. 2003. Nucleic Acids Res. 31: 779-789.
44. RICHTER, A., SCHWAGER, C., HENTZE, S., ANSORGE, W., HENTZE, M.W. & MUCKENTHALER, M. 2002. Biotechniques 33: 620-630.
45. SCHMALENBERGER, A., SCHWIEGER, F. & TEBBE, C.C. 2001. Appl. Environ. Microbiol. 67: 3557-3563.
46. SMALL, J., CALL, D.R., BROCKMAN, F.J., STRAUB, T.M. & CHANDLER, D.P. 2001. Appl. Environ. Microbiol. 67: 4708-4716.
47. SOSNOWSKI, R.G., TU, E., BUTLER, W.F., O'CONNELL, J.P. & HELLER, M.J. 1997. Proc. Natl. Acad. Sci. USA 94: 1119-1123.
48. STRAUB, T.M., DALY, D.S., WUNSHEL, S., ROCHELLE, P.A., DELEON, R. & CHANDLER, D.P. 2002. Appl. Environ. Microbiol. 68: 1817-1826.
49. SUZUKI, M.T. & GIOVANNONI, S.J. 1996. Appl. Environ. Microbiol. 62: 625-630.
50. TARONCHER-OLDENBURG, G., GRINER, E.M., FRANCIS, C.A. & WARD, B.B. 2003. Appl. Environ. Microbiol. 69: 1159-1171.
51. TROESCH, A,. NGUYEN, H., MIYADA, C.G., DESVARENNE, S., GINGERAS, T.R., KAPLAN, P.M., CROS, P. & MABILAT, C. 1999. J. Clin. Microbiol. 37: 49-55.
52. UMEK, R.M., LIN, S.W., VIELMETTER, J., TERBRUEGGEN, R.H., IRVINE, B., YU, C.J., KAYYEM, J.F., YOWANTO, H., BLACKBURN, G.F., FARKAS, D.H. & CHEN, Y.P. 2001. J. Mol. Diagn. 3: 74-84.
53. VOLOKHOV, D., RASOOLY, A., CHUMAKOV, K. & CHIZHIKOV, V. 2002. J. Clin. Microbiol. 40: 4720-4728.
54. VORA, G.J., MEADOR, C.E., STENGER, D.A. & ANDREADIS, J.D. 2004. Appl. Environ. Microbiol. 70: 3047-3054.
55. WANG, D., COSCOY, L., ZYLBERBERG, M., AVILA, P.C., BOUSHEY, H.A., GANEM, D. & DERISI, J.L. 2002a. Proc. Natl. Acad. Sci. USA. 99: 15687-15692.
56. WANG, R.F., BEGGS, M.L., ROBERTSON, L.H. & CERNIGLIA, C.E. 2002b. FEMS Microbiol. Lett. 213: 175-182.
57. WATERS, L.C., JACOBSON, S.C., KROUTCHININA, N., KHANDURINA, J., FOOTE, R.S. & RAMSEY, J.M. 1998. Anal. Chem. 70: 5172-5176.
58. WILSON, W.J., STROUT, C.L., DESANTIS, T.Z., STILWELL, J.L., CARRANO, A.V. & ANDERSEN, G.L. 2002a. Mol. Cell. Probes 16: 119-127.
59. WILSON, K.H., WILSON, W.J., RADOSEVICH, J.L., DESANTIS, T.Z., VISWANATHAN, V.S., KUCZMARSKI, T.A. & ANDERSEN, G.L. 2002b. Appl. Environ. Microbiol. 68: 2535-2541.
60. WOOLLEY, A.T., HADLEY, D., LANDRE, P., DEMELLO, A.J., MATHIES, R.A. & NORTHRUP, M.A. 1996. Anal. Chem. 68: 4081-4086.
61. YERSHOV, G., BARSKY, V., BELGOVSKIY, A., KIRILLOV, E., KREINDLIN, E., IVANOV, I., PARINOV, S., GUSCHIN, D., DROBISHEV, A., DUBILEY, S. & MIRZABEKOV, A. 1996. Proc. Natl. Acad. Sci. USA. 93: 4913-4918.
62. ZABAROVSKY, E.R., PETRENKO, L., PROTOPOPOV, A., VORONTSOVA, O., KUTSENKO, A.S., ZHAO, Y., KILOSANIDZE, G., ZABAROVSKA, V., RAKHMANALIEV, E., PETTERSSON, B., KASHUBA, V.I., LJUNGQVIST, O., NORIN, E., MIDTVEDT, T., MOLLBY, R., WINBERG, G. & ERNBERG, I. 2003. Nucleic Acids Res. 31: E95.