메뉴 건너뛰기




Volumn 31, Issue 2, 2003, Pages 779-789

Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; RNA 16S; SINGLE STRANDED DNA;

EID: 0037440083     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg132     Document Type: Review
Times cited : (29)

References (36)
  • 1
    • 0031963203 scopus 로고    scopus 로고
    • DNA chips: State-of-the art
    • Ramsay,G. (1998) DNA chips: state-of-the art. Nat. Biotechnol., 16, 40-44.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 40-44
    • Ramsay, G.1
  • 2
    • 0031984126 scopus 로고    scopus 로고
    • Accurate sequencing by hybridization for DNA diagnostics and individual genomics
    • Drmanac,S., Kita,D., Labat,I., Hauser,B., Schmidt,C. and Burczak,J.D. (1998) Accurate sequencing by hybridization for DNA diagnostics and individual genomics. Nat. Biotechnol., 16, 54-58.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 54-58
    • Drmanac, S.1    Kita, D.2    Labat, I.3    Hauser, B.4    Schmidt, C.5    Burczak, J.D.6
  • 3
    • 0002437591 scopus 로고    scopus 로고
    • Genosensors and model hybridization studies
    • Beugelsdiik,A. (ed.), John Wiley and Sons, New York
    • Doktycz,M.J. and Beattie,K.L. (1997) Genosensors and model hybridization studies. In Beugelsdiik,A. (ed.), Automation Technologies for Genome Characterization. John Wiley and Sons, New York, pp. 205-225.
    • (1997) Automation Technologies for Genome Characterization , pp. 205-225
    • Doktycz, M.J.1    Beattie, K.L.2
  • 5
    • 0002132046 scopus 로고    scopus 로고
    • Analytical microsystems: Emerging technologies for environmental biomonitoring
    • Sayler,G.S., Sanseverino,J. and Davis,K.L. (eds), Plenum Press, New York
    • Beattie,K.L. (1997) Analytical microsystems: emerging technologies for environmental biomonitoring. In Sayler,G.S., Sanseverino,J. and Davis,K.L. (eds), Biotechnology in the Sustainable Environment. Plenum Press, New York, pp. 249-260.
    • (1997) Biotechnology in the Sustainable Environment , pp. 249-260
    • Beattie, K.L.1
  • 8
    • 0028044921 scopus 로고
    • PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid
    • Greisen,K., Loeffelholz,M., Purohit,A. and Leong.D. (1994) PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid. J. Clin. Microbiol., 32, 335-352.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 335-352
    • Greisen, K.1    Loeffelholz, M.2    Purohit, A.3    Leong, D.4
  • 9
    • 0028103335 scopus 로고
    • Distribution of alginate genes in bacterial isolates from corroded metal surfaces
    • Wallace,W.H., Rice,J.F., White,D.C. and Sayler,G.S. (1994) Distribution of alginate genes in bacterial isolates from corroded metal surfaces. Microb. Ecol., 27, 213-223.
    • (1994) Microb. Ecol. , vol.27 , pp. 213-223
    • Wallace, W.H.1    Rice, J.F.2    White, D.C.3    Sayler, G.S.4
  • 10
    • 0021223667 scopus 로고
    • Cloning and expression in Pseudomonas aeruginosa of gene involved in the production of alginate
    • Goldberg,J.B. and Ohman,D.E. (1984) Cloning and expression in Pseudomonas aeruginosa of gene involved in the production of alginate. J. Bacteriol., 169, 1115-1121.
    • (1984) J. Bacteriol. , vol.169 , pp. 1115-1121
    • Goldberg, J.B.1    Ohman, D.E.2
  • 18
    • 4244198745 scopus 로고    scopus 로고
    • Direct submission
    • DDBJ/EMBL/GenBank accession no. AB020208
    • Tsukamoto,T. (1998) Direct submission DDBJ/EMBL/GenBank accession no. AB020208.
    • (1998)
    • Tsukamoto, T.1
  • 20
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia,J. (1998) A unified view of polymer, dumbbell and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia, J.1
  • 21
    • 0035053268 scopus 로고    scopus 로고
    • Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing
    • Hicks,J.S., Harker,B.W., Beattie,K.L, and Doktycz,M.J. (2001) Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing. Biotechniques, 30, 878-885.
    • (2001) Biotechniques , vol.30 , pp. 878-885
    • Hicks, J.S.1    Harker, B.W.2    Beattie, K.L.3    Doktycz, M.J.4
  • 22
    • 0035228515 scopus 로고    scopus 로고
    • Analysis of nucleic acids by tandem hybridization on oligonucleotide microarrays
    • Rampal,J.B. (ed.), Humana Press, Totowa, NJ
    • Maldonado-Rodriguez,R. and Beattie,K.L. (2001) Analysis of nucleic acids by tandem hybridization on oligonucleotide microarrays. In Rampal,J.B. (ed.), DNA Arrays. Methods and Protocols. Humana Press, Totowa, NJ, pp. 157-171.
    • (2001) DNA Arrays. Methods and Protocols , pp. 157-171
    • Maldonado-Rodriguez, R.1    Beattie, K.L.2
  • 23
    • 0033063163 scopus 로고    scopus 로고
    • Hybridization of glass-tethered oligonucleotide probes to target strands preannealed with labeled auxiliary oligonucleotides
    • Maldonado-Rodriguez,R., Espinosa-Lara,M., Calixto-Suárez,A., Beattie,W.G. and Beattie,K.L. (1999) Hybridization of glass-tethered oligonucleotide probes to target strands preannealed with labeled auxiliary oligonucleotides. Mol. Biotechnol., 11, 1-12.
    • (1999) Mol. Biotechnol. , vol.11 , pp. 1-12
    • Maldonado-Rodriguez, R.1    Espinosa-Lara, M.2    Calixto-Suárez, A.3    Beattie, W.G.4    Beattie, K.L.5
  • 24
    • 0030875847 scopus 로고    scopus 로고
    • Thermodynamics and NMR of internal G-T mismatches in DNA
    • Allawi,H.T. and SantaLucia,J. (1997) Thermodynamics and NMR of internal G-T mismatches in DNA. Biochemistry, 36, 10581-10594.
    • (1997) Biochemistry , vol.36 , pp. 10581-10594
    • Allawi, H.T.1    SantaLucia, J.2
  • 25
    • 0032562140 scopus 로고    scopus 로고
    • Nearest neighbor thermodynamic parameters for internal G·A mismatches in DNA
    • Allawi,H.T. and SantaLucia,J. (1998) Nearest neighbor thermodynamic parameters for internal G·A mismatches in DNA. Biochemistry, 37, 2170-2179.
    • (1998) Biochemistry , vol.37 , pp. 2170-2179
    • Allawi, H.T.1    SantaLucia, J.2
  • 26
    • 0032102940 scopus 로고    scopus 로고
    • Thermodynamics of internal C·T mismatches in DNA
    • Allawi,H.T. and SantaLucia,J. (1998b) Thermodynamics of internal C·T mismatches in DNA. Nucleic Acids Res., 26, 2694-2701.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2694-2701
    • Allawi, H.T.1    SantaLucia, J.2
  • 27
    • 0032581024 scopus 로고    scopus 로고
    • Nearest-neighbor thermodynamics of internal A-C mismatches in DNA. Sequence dependence and pH effects
    • Allawi,H.T. and SantaLucia,J. (1998c) Nearest-neighbor thermodynamics of internal A-C mismatches in DNA. Sequence dependence and pH effects. Biochemistry, 37, 9435-9444.
    • (1998) Biochemistry , vol.37 , pp. 9435-9444
    • Allawi, H.T.1    SantaLucia, J.2
  • 28
    • 0033596964 scopus 로고    scopus 로고
    • Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A,C.C,G.G and T.T mismatches
    • Peyret,N., Ananda,S.P., Allawi,H.T. and SantaLucia,J.,Jr (1999) Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A,C.C,G.G and T.T mismatches. Biochemistry, 38, 3468-3477.
    • (1999) Biochemistry , vol.38 , pp. 3468-3477
    • Peyret, N.1    Ananda, S.P.2    Allawi, H.T.3    SantaLucia J., Jr.4
  • 29
  • 30
    • 0028933039 scopus 로고
    • Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability
    • Doktycz,M.J., Morris,M.D., Dormady,S.J., Beattie,K.L. and Jacobson,K.B. (1995) Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability. J. Biol. Chem., 270, 8439-8445.
    • (1995) J. Biol. Chem. , vol.270 , pp. 8439-8445
    • Doktycz, M.J.1    Morris, M.D.2    Dormady, S.J.3    Beattie, K.L.4    Jacobson, K.B.5
  • 31
    • 0030833627 scopus 로고    scopus 로고
    • Genosensor technology and the detection of interfacial nucleic acid chemistry
    • Yang,M., McGovern,M.E. and Thompson,M. (1997) Genosensor technology and the detection of interfacial nucleic acid chemistry. Anal. Chim. Acta, 346, 259-275.
    • (1997) Anal. Chim. Acta , vol.346 , pp. 259-275
    • Yang, M.1    McGovern, M.E.2    Thompson, M.3
  • 32
    • 84984934354 scopus 로고    scopus 로고
    • Molecular interactions on microarrays
    • Southern,E., Mir,K. and Shchepinov,M. (1999) Molecular interactions on microarrays. Nature Genet., 21 (suppl.), 5-9.
    • (1999) Nature Genet. , vol.21 , Issue.SUPPL. , pp. 5-9
    • Southern, E.1    Mir, K.2    Shchepinov, M.3
  • 34
    • 0035210154 scopus 로고    scopus 로고
    • Optimization of an oligonucleotide microchip for microbial identification studies: A non-equilibrium dissociation approach
    • Liu,W.-T., Mirzabekov,A.D. and Stahl,D.A. (2001) Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Environ. Microbiol., 3, 619-629.
    • (2001) Environ. Microbiol. , vol.3 , pp. 619-629
    • Liu, W.-T.1    Mirzabekov, A.D.2    Stahl, D.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.