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Volumn 41, Issue 6, 2003, Pages 2605-2615

Detection and identification of Mycobacterium species isolates by DNA microarray

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING);

EID: 0038180478     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.41.6.2605-2615.2003     Document Type: Article
Times cited : (104)

References (46)
  • 1
    • 0029997231 scopus 로고    scopus 로고
    • Clinical evaluation of the Roche AMPLICOR PCR Mycobacterium tuberculosis test for detection of M. tuberculosis in respiratory specimens
    • Bergmann, J. S., and G. L. Woods. 1996. Clinical evaluation of the Roche AMPLICOR PCR Mycobacterium tuberculosis test for detection of M. tuberculosis in respiratory specimens. J. Clin. Microbiol. 34:1083-1085.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 1083-1085
    • Bergmann, J.S.1    Woods, G.L.2
  • 2
    • 0024437833 scopus 로고
    • Rapid diagnosis of tuberculosis by amplification of mycobacterial DNA in clinical samples
    • Brisson-Noel, A., B. Gicquel, D. Lecossier, V. Levy-Frebault, X. Nassiv, and A. J. Hance. 1989. Rapid diagnosis of tuberculosis by amplification of mycobacterial DNA in clinical samples. Lancet ii:1069-1071.
    • (1989) Lancet , vol.2 , pp. 1069-1071
    • Brisson-Noel, A.1    Gicquel, B.2    Lecossier, D.3    Levy-Frebault, V.4    Nassiv, X.5    Hance, A.J.6
  • 4
    • 0029981033 scopus 로고    scopus 로고
    • Prospective clinical evaluation of Amplicor Mycobacterium tuberculosis PCR test as a screening method in a low-prevalence population
    • Cartuyvels, R., C. de Ridder, S. Jonckheere, L. Verbist, and J. van Eldere. 1996. Prospective clinical evaluation of Amplicor Mycobacterium tuberculosis PCR test as a screening method in a low-prevalence population. J. Clin. Microbiol. 34:2001-2003.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 2001-2003
    • Cartuyvels, R.1    De Ridder, C.2    Jonckheere, S.3    Verbist, L.4    Van Eldere, J.5
  • 5
    • 0036162066 scopus 로고    scopus 로고
    • Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries
    • Cloud, J. L., H. Neal, R. Rosenberry, C. Y. Turenne, M. Jama, D. R. Hillyard, and K. C. Carroll. 2002. Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries. J. Clin. Microbiol. 40:400-406.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 400-406
    • Cloud, J.L.1    Neal, H.2    Rosenberry, R.3    Turenne, C.Y.4    Jama, M.5    Hillyard, D.R.6    Carroll, K.C.7
  • 6
    • 0026500411 scopus 로고
    • Use of polymerase chain reaction for rapid diagnosis of tuberculosis
    • Cousins, D. V., S. D. Wilton, B. R. Francis, and B. L. Gow. 1992. Use of polymerase chain reaction for rapid diagnosis of tuberculosis. J. Clin. Microbiol. 30:255-258.
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 255-258
    • Cousins, D.V.1    Wilton, S.D.2    Francis, B.R.3    Gow, B.L.4
  • 7
    • 0026018651 scopus 로고
    • Tuberculosis in Australia: An unfinished fight
    • Dawson, D. J. 1990. Tuberculosis in Australia: an unfinished fight. Med. J. Aust. 154:75-76.
    • (1990) Med. J. Aust. , vol.154 , pp. 75-76
    • Dawson, D.J.1
  • 8
    • 0025029341 scopus 로고
    • Direct detection of Mycobacterium tuberculosis in clinical specimens by DNA amplification
    • De Wit, D., L. Steyn, S. Shoemaker, and M. Sogin. 1990. Direct detection of Mycobacterium tuberculosis in clinical specimens by DNA amplification. J. Clin. Microbiol. 28:2437-2441.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 2437-2441
    • De Wit, D.1    Steyn, L.2    Shoemaker, S.3    Sogin, M.4
  • 9
    • 0025275474 scopus 로고
    • Polymerase chain reaction amplification of a repetitive DNA sequence specific for Mycobacterium tuberculosis
    • Eisenach, K. D., M. D. Cave, J. H. Bates, and J. T. Crawford. 1990. Polymerase chain reaction amplification of a repetitive DNA sequence specific for Mycobacterium tuberculosis. J. Infect. Dis. 161:977-981.
    • (1990) J. Infect. Dis. , vol.161 , pp. 977-981
    • Eisenach, K.D.1    Cave, M.D.2    Bates, J.H.3    Crawford, J.T.4
  • 10
    • 0025935052 scopus 로고
    • Detection of Mycobacterium tuberculosis in sputum samples using a polymerase chain reaction
    • Eisenach, K. D., M. D. Sifford, M. D. Cave, J. H. Bates, and J. T. Crawford. 1991. Detection of Mycobacterium tuberculosis in sputum samples using a polymerase chain reaction. Am. Rev. Respir. Dis. 144:1160-1163.
    • (1991) Am. Rev. Respir. Dis. , vol.144 , pp. 1160-1163
    • Eisenach, K.D.1    Sifford, M.D.2    Cave, M.D.3    Bates, J.H.4    Crawford, J.T.5
  • 11
    • 0025408879 scopus 로고
    • Genus- and species-specific DNA probes to identify mycobacteria using the polymerase chain reaction
    • Fries, J. W. U., R. J. Patel, W. F. Piessens, and D. F. Wirth. 1990. Genus- and species-specific DNA probes to identify mycobacteria using the polymerase chain reaction. Mol. Cell. Probes 4:87-105.
    • (1990) Mol. Cell. Probes , vol.4 , pp. 87-105
    • Fries, J.W.U.1    Patel, R.J.2    Piessens, W.F.3    Wirth, D.F.4
  • 12
    • 0036701963 scopus 로고    scopus 로고
    • Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli on the basis of the gyrB gene sequence
    • Fukushima, M., K. Kakinuma, and R. Kawaguchi. 2002. Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli on the basis of the gyrB gene sequence. J. Clin. Microbiol. 40:2779-2785.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 2779-2785
    • Fukushima, M.1    Kakinuma, K.2    Kawaguchi, R.3
  • 13
    • 0036194560 scopus 로고    scopus 로고
    • Evaluation of dry and wet transported intravaginal swabs in detection of Chlamydia trachomatis and Neisseria gonorrhoeae infections in female soldiers by PCR
    • Gaydos, C. A., K. A. Crotechfelt, N. Shah, M. Tennant, T. C. Quinn, J. C. Gaydos, K. T. McKee, Jr., and A. M. Rompalo. 2002. Evaluation of dry and wet transported intravaginal swabs in detection of Chlamydia trachomatis and Neisseria gonorrhoeae infections in female soldiers by PCR. J. Clin. Microbiol. 40:758-761.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 758-761
    • Gaydos, C.A.1    Crotechfelt, K.A.2    Shah, N.3    Tennant, M.4    Quinn, T.C.5    Gaydos, J.C.6    McKee K.T., Jr.7    Rompalo, A.M.8
  • 14
    • 0027195614 scopus 로고
    • Mixed-linker polymerase chain reaction: A new method for rapid fingerprinting of isolates of the Mycobacterium tuberculosis complex
    • Haas, W. H., W. R. Butler, C. L. Woodley, and J. T. Crawford. 1993. Mixed-linker polymerase chain reaction: a new method for rapid fingerprinting of isolates of the Mycobacterium tuberculosis complex. J. Clin. Microbiol. 31: 1293-1298.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 1293-1298
    • Haas, W.H.1    Butler, W.R.2    Woodley, C.L.3    Crawford, J.T.4
  • 17
    • 0026605537 scopus 로고
    • CLUSTAL V: Improved software for multiple sequence alignment
    • Higgins, D. G., A. J. Bleasby, and R. Fuchs. 1992. CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 189-191
    • Higgins, D.G.1    Bleasby, A.J.2    Fuchs, R.3
  • 18
    • 0032930929 scopus 로고    scopus 로고
    • Identification of clinical isolates of Mycobacterium spp. by sequence analysis of the 16S ribosomal RNA gene. Experience from a clinical laboratory
    • Holberg-Petersen, M., M. Steinbakk, K. J. Figenschau, E. Jantzen, J. Eng, and K. K. Melby. 1999. Identification of clinical isolates of Mycobacterium spp. by sequence analysis of the 16S ribosomal RNA gene. Experience from a clinical laboratory. APM1S 107:231-239.
    • (1999) APM1S , vol.107 , pp. 231-239
    • Holberg-Petersen, M.1    Steinbakk, M.2    Figenschau, K.J.3    Jantzen, E.4    Eng, J.5    Melby, K.K.6
  • 19
    • 0033986599 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences
    • Kasai, H., T. Ezaki, and S. Harayama. 2000. Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. J. Clin. Microbiol. 38:301-308.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 301-308
    • Kasai, H.1    Ezaki, T.2    Harayama, S.3
  • 20
    • 0036138388 scopus 로고    scopus 로고
    • Rapid detection and quantification of CMV DNA in urine using LightCycler-based real-time PCR
    • Kearns, A. M., A. J. Turner, G. J. Eltringham, and R. Freeman. 2002. Rapid detection and quantification of CMV DNA in urine using LightCycler-based real-time PCR. J. Clin. Virol. 24:131-134.
    • (2002) J. Clin. Virol. , vol.24 , pp. 131-134
    • Kearns, A.M.1    Turner, A.J.2    Eltringham, G.J.3    Freeman, R.4
  • 23
    • 0033063163 scopus 로고    scopus 로고
    • Hybridization of glass-tethered oligonucleotide probes to target strands preannealed with labeled auxiliary oligonucleotides
    • Maldonado, R. R., M. L. Espinosa, C. S. Suarez, W. G. Beattie, and K. L. Beattie. 1999. Hybridization of glass-tethered oligonucleotide probes to target strands preannealed with labeled auxiliary oligonucleotides. Mol. Biotechnol. 11:1-12.
    • (1999) Mol. Biotechnol. , vol.11 , pp. 1-12
    • Maldonado, R.R.1    Espinosa, M.L.2    Suarez, C.S.3    Beattie, W.G.4    Beattie, K.L.5
  • 24
    • 0025171362 scopus 로고
    • Detection and identification of Mycobacterium tuberculosis by DNA amplification
    • Pao, C. C., T. S. B. Yen, J.-B. You, J.-S. Maa, E. H. Fiss, and C.-H. Chang. 1990. Detection and identification of Mycobacterium tuberculosis by DNA amplification. J. Clin. Microbiol. 28:1877-1880.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1877-1880
    • Pao, C.C.1    Yen, T.S.B.2    You, J.-B.3    Maa, J.-S.4    Fiss, E.H.5    Chang, C.-H.6
  • 25
    • 0033989458 scopus 로고    scopus 로고
    • Sequence-based identification of Mycobacterium species using the MicroSeq 500 16S rDNA bacterial identification system
    • Patel, J. B., D. G. Leonard, X. Pan, J. M. Musser, R. E. Berman, and I. Nachamkin. 2000. Sequence-based identification of Mycobacterium species using the MicroSeq 500 16S rDNA bacterial identification system. J. Clin. Microbiol. 38:246-251.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 246-251
    • Patel, J.B.1    Leonard, D.G.2    Pan, X.3    Musser, J.M.4    Berman, R.E.5    Nachamkin, I.6
  • 26
    • 0025136716 scopus 로고
    • Sequence analysis and amplification by polymerase chain reaction of a cloned DNA fragment for identification of Mycobacterium tuberculosis
    • Patel, R. J., J. W. U. Fries, W. F. Piessens, and D. F. Wirth. 1990. Sequence analysis and amplification by polymerase chain reaction of a cloned DNA fragment for identification of Mycobacterium tuberculosis. J. Clin. Microbiol. 28:513-518.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 513-518
    • Patel, R.J.1    Fries, J.W.U.2    Piessens, W.F.3    Wirth, D.F.4
  • 27
    • 0031963203 scopus 로고    scopus 로고
    • DNA chips: State-of-the art
    • Ramsay, G. 1998. DNA chips: state-of-the art. Nat. Biotechnol. 16:40-44.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 40-44
    • Ramsay, G.1
  • 28
    • 0035559446 scopus 로고    scopus 로고
    • Diagnosis of foot-and-mouth disease by RT-PCR: Use of phylogenetic data to evaluate primers for the typing of viral RNA in clinical samples
    • Reid, S. M., N. P. Ferris, G. H. Hutchings, K. De Clercq, B. J. Newman, N. J. Knowle, and A. R. Samuel. 2001. Diagnosis of foot-and-mouth disease by RT-PCR: use of phylogenetic data to evaluate primers for the typing of viral RNA in clinical samples. Arch. Virol. 146:2421-2434.
    • (2001) Arch. Virol. , vol.146 , pp. 2421-2434
    • Reid, S.M.1    Ferris, N.P.2    Hutchings, G.H.3    De Clercq, K.4    Newman, B.J.5    Knowle, N.J.6    Samuel, A.R.7
  • 29
    • 0002314682 scopus 로고
    • Mycobacterium
    • A. Balows, W. J. Hausler, K. L. Hermann, H. D. Isenberg, and H. J. Shadomy (ed.), American Society for Microbiology, Washington, D.C.
    • Roberts, G. D., E. W. Koneman, and Y. K. I. Kim. 1991. Mycobacterium, p. 304-340. In A. Balows, W. J. Hausler, K. L. Hermann, H. D. Isenberg, and H. J. Shadomy (ed.), Manual of clinical microbiology, 5th ed. American Society for Microbiology, Washington, D.C.
    • (1991) Manual of Clinical Microbiology, 5th Ed. , pp. 304-340
    • Roberts, G.D.1    Koneman, E.W.2    Kim, Y.K.I.3
  • 30
    • 0027497335 scopus 로고
    • Rapid, simple method for typing isolates of Mycobacterium tuberculosis by using the polymerase chain reaction
    • Ross, B. C., and B. Dwyer. 1993. Rapid, simple method for typing isolates of Mycobacterium tuberculosis by using the polymerase chain reaction. J. Clin. Microbiol. 31:329-334.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 329-334
    • Ross, B.C.1    Dwyer, B.2
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. E. 4:406-425.
    • (1987) Mol. Biol. E , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 0034838271 scopus 로고    scopus 로고
    • Direct identification of mycobacteria from MB/BacT alert 3D bottles: Comparative evaluation of two commercial probe assays
    • Scarparo, C., P. Piccoli, A. Rigon, G. Ruggiero, D. Nista, and C. Piersimoni. 2001. Direct identification of mycobacteria from MB/BacT alert 3D bottles: comparative evaluation of two commercial probe assays. J. Clin. Microbiol. 39:3222-3227.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3222-3227
    • Scarparo, C.1    Piccoli, P.2    Rigon, A.3    Ruggiero, G.4    Nista, D.5    Piersimoni, C.6
  • 35
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., D. Shalon, R. W. Davis, and P. O. Brown. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 37
    • 0027473183 scopus 로고
    • Detection of Mycobacterium tuberculosis in clinical samples by two-step polymerase chain reaction and nonisotopic hybridization methods
    • Shawar, R. M., F. A. K. El-Zaatari, A. Nataraj, and J. E. Clarridge. 1993., Detection of Mycobacterium tuberculosis in clinical samples by two-step polymerase chain reaction and nonisotopic hybridization methods. J. Clin. Microbiol. 31:61-65.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 61-65
    • Shawar, R.M.1    El-Zaatari, F.A.K.2    Nataraj, A.3    Clarridge, J.E.4
  • 39
    • 0027498480 scopus 로고
    • Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes
    • Takewaki, S.-I., K. Okuzumi, H. Ishiko, K.-I. Nakahara, A. Ohkubo, and R. Nagai. 1993. Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes. J. Clin. Microbiol. 31:446-450.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 446-450
    • Takewaki, S.-I.1    Okuzumi, K.2    Ishiko, H.3    Nakahara, K.-I.4    Ohkubo, A.5    Nagai, R.6
  • 43
    • 0027457184 scopus 로고
    • Progress toward a simplified polymerase chain reaction and its application to diagnosis of tuberculosis
    • Wilson, S. M., R. McNerney, P. M. Nye, P. D. Godfrey-Faussett, N. G. Stoker, and A. Voller. 1993. Progress toward a simplified polymerase chain reaction and its application to diagnosis of tuberculosis. J. Clin. Microbiol. 31:776-782.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 776-782
    • Wilson, S.M.1    McNerney, R.2    Nye, P.M.3    Godfrey-Faussett, P.D.4    Stoker, N.G.5    Voller, A.6
  • 44
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto, S., and S. Harayama. 1995. PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl. Environ. Microbiol. 61:1104-1109.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2
  • 45
    • 0029863154 scopus 로고    scopus 로고
    • Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products
    • Yamamoto, S., and S. Harayama. 1996. Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products. Int. J. Syst. Bacteriol. 46:506-511.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 506-511
    • Yamamoto, S.1    Harayama, S.2
  • 46
    • 0031827993 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD, and 16S rRNA genes
    • Yamamoto, S., and S. Harayama. 1998. Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD, and 16S rRNA genes. Int. J. Syst. Bacteriol. 3:813-819.
    • (1998) Int. J. Syst. Bacteriol. , vol.3 , pp. 813-819
    • Yamamoto, S.1    Harayama, S.2


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