-
1
-
-
0035007418
-
Frequency of morphological phage descriptions in the year 2000
-
Ackermann, H. W. 2001. Frequency of morphological phage descriptions in the year 2000. Arch. Virol. 146:843-857.
-
(2001)
Arch. Virol.
, vol.146
, pp. 843-857
-
-
Ackermann, H.W.1
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0032828523
-
The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virus
-
Arnold, H. P., Q. She, H. Phan, K. Stedman, D. Prangishvili, I. Holz, J. K. Kristjansson, R. Garrett, and W. Zillig. 1999. The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virus. Mol. Microbiol. 44:217-226.
-
(1999)
Mol. Microbiol.
, vol.44
, pp. 217-226
-
-
Arnold, H.P.1
She, Q.2
Phan, H.3
Stedman, K.4
Prangishvili, D.5
Holz, I.6
Kristjansson, J.K.7
Garrett, R.8
Zillig, W.9
-
4
-
-
0034608829
-
SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus
-
Arnold, H. P., U. Ziese, and W. Zillig. 2000. SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus. Virology 272:409-416.
-
(2000)
Virology
, vol.272
, pp. 409-416
-
-
Arnold, H.P.1
Ziese, U.2
Zillig, W.3
-
5
-
-
18144442823
-
A novel lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon Sulfolobus
-
Arnold, H. P., W. Zillig, U. Ziese, I. Holz, M. Crosby, T. Urterback, J. F. Weidmann, J. K. Kristjanson, H. P. Klenk, K. E. Nelson, and C. M. Fraser. 2000. A novel lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon Sulfolobus. Virology 267:252-266.
-
(2000)
Virology
, vol.267
, pp. 252-266
-
-
Arnold, H.P.1
Zillig, W.2
Ziese, U.3
Holz, I.4
Crosby, M.5
Urterback, T.6
Weidmann, J.F.7
Kristjanson, J.K.8
Klenk, H.P.9
Nelson, K.E.10
Fraser, C.M.11
-
6
-
-
0034094816
-
The archaeal halophilic virus-encoded Dam-like methyltransferase M. phiCh1-I methylates adenine residues and complements dam mutants in the low salt environment of Escherichia coli
-
Baranyi, U., R. Klein, W. Lubitz, D. H. Kruger, and A. Witte. 2000. The archaeal halophilic virus-encoded Dam-like methyltransferase M. phiCh1-I methylates adenine residues and complements dam mutants in the low salt environment of Escherichia coli. Mol. Microbiol. 35:1168-1179.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1168-1179
-
-
Baranyi, U.1
Klein, R.2
Lubitz, W.3
Kruger, D.H.4
Witte, A.5
-
7
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall, and E. L. Sonnhammer. 2002. The Pfam protein families database. Nucleic Acids Res. 30:276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
8
-
-
0031680647
-
His1, an archaeal virus of the Fusello-viridae family that infects Haloarcula hispanica
-
Bath, C., and M. L. Dyall-Smith. 1998. His1, an archaeal virus of the Fusello-viridae family that infects Haloarcula hispanica. J. Virol. 72:9392-9395.
-
(1998)
J. Virol.
, vol.72
, pp. 9392-9395
-
-
Bath, C.1
Dyall-Smith, M.L.2
-
9
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
Bell, S. D., and S. P. Jackson. 2001. Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol. 4:208-213.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
10
-
-
0033953309
-
Mass spectrometry of the human pituitary proteome: Identification of selected proteins
-
Beranova-Giorgianni, S., and D. M. Desiderio. 2000. Mass spectrometry of the human pituitary proteome: identification of selected proteins. Rapid Commun. Mass. Spectrom. 14:161-167.
-
(2000)
Rapid Commun. Mass. Spectrom.
, vol.14
, pp. 161-167
-
-
Beranova-Giorgianni, S.1
Desiderio, D.M.2
-
11
-
-
0242300042
-
AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus
-
Bettstetter, M., X. Peng, R. A. Garrett, and D. Prangishvili. 2003. AFV1, a novel virus infecting hyperthermophilic archaea of the genus Acidianus. Virology 315:68-79.
-
(2003)
Virology
, vol.315
, pp. 68-79
-
-
Bettstetter, M.1
Peng, X.2
Garrett, R.A.3
Prangishvili, D.4
-
12
-
-
0035264536
-
The genome of the archaeal virus STRV1 has features in common with genomes of eukaryal viruses
-
Blum, H., W. Zillig, S. Mallok, H. Domdey, and D. Prangishvili. 2001. The genome of the archaeal virus STRV1 has features in common with genomes of eukaryal viruses. Virology 281:6-9.
-
(2001)
Virology
, vol.281
, pp. 6-9
-
-
Blum, H.1
Zillig, W.2
Mallok, S.3
Domdey, H.4
Prangishvili, D.5
-
13
-
-
0000241874
-
GeneMark: Parallel gene recognition for both DNA strands
-
Borodovsky, M., and J. McIninch. 1993. GeneMark: parallel gene recognition for both DNA strands. Comput. Chem. 17:123-133.
-
(1993)
Comput. Chem.
, vol.17
, pp. 123-133
-
-
Borodovsky, M.1
McIninch, J.2
-
14
-
-
0023651218
-
Cleavage of methylated CCCGGG sequences containing either N4-methylcytosine or 5-methylcytosine with MspI, HpaII, SmaI, XmaI and Cfr9I restriction endonucleases
-
Butkus, V., L. Petrauskjene, Z. Maneliene, S. Klimasauskas, V. Laucys, and A. Janulaitis. 1987. Cleavage of methylated CCCGGG sequences containing either N4-methylcytosine or 5-methylcytosine with MspI, HpaII, SmaI, XmaI and Cfr9I restriction endonucleases. Nucleic Acids Res. 15:7091-7102.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 7091-7102
-
-
Butkus, V.1
Petrauskjene, L.2
Maneliene, Z.3
Klimasauskas, S.4
Laucys, V.5
Janulaitis, A.6
-
15
-
-
0037039357
-
The genome sequence of the facultative intracellular pathogen Brucella melitensis
-
DelVecchio, V. G., V. Kapatral, R. J. Redkar, G. Patra, C. Mujer, T. Los, N. Ivanova, I. Anderson, A. Bhattacharyya, A. Lykjdis, G. Reznik, L. Jablonski, N. Larsen, M. D'Souza, A. Bernal, M. Mazur, E. Goltsman, E. Selkov, P. H. Elzer, S. Hagius, D. O'Callaghan, J. J. Letesson, R. Haselkorn, N. Kyrpides, and R. Overbeek. 2002. The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc. Natl. Acad. Sci. USA 99:443-448.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 443-448
-
-
DelVecchio, V.G.1
Kapatral, V.2
Redkar, R.J.3
Patra, G.4
Mujer, C.5
Los, T.6
Ivanova, N.7
Anderson, I.8
Bhattacharyya, A.9
Lykjdis, A.10
Reznik, G.11
Jablonski, L.12
Larsen, N.13
D'Souza, M.14
Bernal, A.15
Mazur, M.16
Goltsman, E.17
Selkov, E.18
Elzer, P.H.19
Hagius, S.20
O'Callaghan, D.21
Letesson, J.J.22
Haselkorn, R.23
Kyrpides, N.24
Overbeek, R.25
more..
-
16
-
-
0024743516
-
Molecular complementation of a genetic marker in Dictyostelium using a genomic DNA library
-
Dynes, J. L., and R. A. Firtel. 1989. Molecular complementation of a genetic marker in Dictyostelium using a genomic DNA library. Proc. Natl. Acad. Sci. USA 86:7966-7970.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 7966-7970
-
-
Dynes, J.L.1
Firtel, R.A.2
-
17
-
-
0035283220
-
New viruses for the new millennium
-
Forterre, P. 2001. New viruses for the new millennium. Trends Microbiol. 9:114.
-
(2001)
Trends Microbiol.
, vol.9
, pp. 114
-
-
Forterre, P.1
-
18
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
Galagan, J. E., C. Nusbaum, A. Roy, M. G. Endrizzi, P. Macdonald, W. FitzHugh, S. Calvo, R. Engels, S. Smirnov, D. Atnoor, A. Brown, N. Allen, J. Naylor, N. Stange-Thomann, K. DeArellano, R. Johnson, L. Linton, P. McEwan, K. McKernan, J. Talamas, A. Tirrell, W. Ye, A. Zimmer, R. D. Barber, I. Cann, D. E. Graham, D. A. Grahame, A. M. Guss, R. Hedderich, C. Ingram-Smith, H. C. Kuettner, J. A. Krzycki, J. A. Leigh, W. Li, J. Liu, B. Mukhopadhyay, J. N. Reeve, K. Smith, T. A. Springer, L. A. Umayam, O. White, R. H. White, E. Conway de Macario, J. G. Ferry, K. F. Jarrell, H. Jing, A. J. Macario, I. Paulsen, M. Pritchett, K. R. Sowers, R. V. Swanson, S. H. Zinder, E. Lander, W. W. Metcalf, and B. Birren. 2002. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res. 12:532-542.
-
(2002)
Genome Res.
, vol.12
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
Fitzhugh, W.6
Calvo, S.7
Engels, R.8
Smirnov, S.9
Atnoor, D.10
Brown, A.11
Allen, N.12
Naylor, J.13
Stange-Thomann, N.14
Dearellano, K.15
Johnson, R.16
Linton, L.17
McEwan, P.18
McKernan, K.19
Talamas, J.20
Tirrell, A.21
Ye, W.22
Zimmer, A.23
Barber, R.D.24
Cann, I.25
Graham, D.E.26
Grahame, D.A.27
Guss, A.M.28
Hedderich, R.29
Ingram-Smith, C.30
Kuettner, H.C.31
Krzycki, J.A.32
Leigh, J.A.33
Li, W.34
Liu, J.35
Mukhopadhyay, B.36
Reeve, J.N.37
Smith, K.38
Springer, T.A.39
Umayam, L.A.40
White, O.41
White, R.H.42
Conway De Macario, E.43
Ferry, J.G.44
Jarrell, K.F.45
Jing, H.46
Macario, A.J.47
Paulsen, I.48
Pritchett, M.49
Sowers, K.R.50
Swanson, R.V.51
Zinder, S.H.52
Lander, E.53
Metcalf, W.W.54
Birren, B.55
more..
-
19
-
-
0027216603
-
Cloning of a chromosomal gene required for phage infection of Lactococcus lactis subsp. lactis C2
-
Geller, B. L., R. G. Ivey, J. E. Trempy, and B. Hettinger-Smith. 1993. Cloning of a chromosomal gene required for phage infection of Lactococcus lactis subsp. lactis C2. J. Bacteriol. 175:5510-5519.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 5510-5519
-
-
Geller, B.L.1
Ivey, R.G.2
Trempy, J.E.3
Hettinger-Smith, B.4
-
20
-
-
0038377425
-
PAV1, the first virus-like particle isolated from a hyperthermophilic euryarchaeote, "Pyrococcus abyssi"
-
Geslin, C., M. Le Romancer, G. Erauso, M. Gaillard, G. Perrot, and D. Prieur. 2003. PAV1, the first virus-like particle isolated from a hyperthermophilic euryarchaeote, "Pyrococcus abyssi". J. Bacteriol. 185:3888-3894.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3888-3894
-
-
Geslin, C.1
Le Romancer, M.2
Erauso, G.3
Gaillard, M.4
Perrot, G.5
Prieur, D.6
-
21
-
-
0037849852
-
Observation of virus-like particles in high temperature enrichment cultures from deep-sea hydrothermal vents
-
Geslin, C., M. Le Romancer, M. Gaillard, G. Erauso, and D. Prieur. 2003. Observation of virus-like particles in high temperature enrichment cultures from deep-sea hydrothermal vents. Res. Microbiol. 154:303-307.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 303-307
-
-
Geslin, C.1
Le Romancer, M.2
Gaillard, M.3
Erauso, G.4
Prieur, D.5
-
22
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., C. Abajian, and P. Green. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
23
-
-
0032524384
-
Analyzing genomes with cumulative skew diagrams
-
Grigoriev, A. 1988. Analyzing genomes with cumulative skew diagrams. Nucleic Acids Res. 26:2286-2290.
-
(1988)
Nucleic Acids Res.
, vol.26
, pp. 2286-2290
-
-
Grigoriev, A.1
-
24
-
-
0037766763
-
Cytosine methylation by the SuaI restriction-modification system: Implications for genetic fidelity in a hyperthermophilic archaeon
-
Grogan, D. W. 2003. Cytosine methylation by the SuaI restriction- modification system: implications for genetic fidelity in a hyperthermophilic archaeon. J. Bacteriol. 185:4657-4661.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4657-4661
-
-
Grogan, D.W.1
-
25
-
-
3042718925
-
Complete genomes of two clinical Staphylococcus aureus strains: Evidence for the rapid evolution of virulence and drug resistance
-
Holden, M. T., E. J. Feil, J. A. Lindsay, S. J. Peacock, N. P. Day, M. C. Enright, T. J. Foster, C. E. Moore, L. Hurst, R. Atkin, A. Barron, N. Bason, S. D. Bentley, C. Chillingworth, T. Chillingworth, C. Churcher, L. Clark, C. Corton, A. Cronin, J. Doggett, L. Dowd, T. Feltwell, Z. Hance, B. Harris, H. Hauser, S. Holroyd, K. Jagels, K. D. James, N. Lennard, A. Line, R. Mayes, S. Moule, K. Mungall, D. Ormond, M. A. Quail, E. Rabbinowitsch, K. Rutherford, M. Sanders, S. Sharp, M. Simmonds, K. Stevens, S. Whitehead, B. G. Barrell, B. G. Spratt, and J. Parkhill. 2004. Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc. Natl. Acad. Sci. USA 101:9786-9791.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9786-9791
-
-
Holden, M.T.1
Feil, E.J.2
Lindsay, J.A.3
Peacock, S.J.4
Day, N.P.5
Enright, M.C.6
Foster, T.J.7
Moore, C.E.8
Hurst, L.9
Atkin, R.10
Barron, A.11
Bason, N.12
Bentley, S.D.13
Chillingworth, C.14
Chillingworth, T.15
Churcher, C.16
Clark, L.17
Corton, C.18
Cronin, A.19
Doggett, J.20
Dowd, L.21
Feltwell, T.22
Hance, Z.23
Harris, B.24
Hauser, H.25
Holroyd, S.26
Jagels, K.27
James, K.D.28
Lennard, N.29
Line, A.30
Mayes, R.31
Moule, S.32
Mungall, K.33
Ormond, D.34
Quail, M.A.35
Rabbinowitsch, E.36
Rutherford, K.37
Sanders, M.38
Sharp, S.39
Simmonds, M.40
Stevens, K.41
Whitehead, S.42
Barrell, B.G.43
Spratt, B.G.44
Parkhill, J.45
more..
-
26
-
-
0032820027
-
Plasmid RK2 ParB protein: Purification and nuclease properties
-
Johnson, E. P., T. Mincer, H. Schwab, A. B. Burgin, and D. R. Helinski. 1999. Plasmid RK2 ParB protein: purification and nuclease properties. J. Bacteriol. 181:6010-6018.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6010-6018
-
-
Johnson, E.P.1
Mincer, T.2
Schwab, H.3
Burgin, A.B.4
Helinski, D.R.5
-
27
-
-
0032815103
-
Bacterial DNA strand compositional asymmetry
-
Karlin, S. 1999. Bacterial DNA strand compositional asymmetry. Trends Microbiol. 7:305-308.
-
(1999)
Trends Microbiol.
, vol.7
, pp. 305-308
-
-
Karlin, S.1
-
28
-
-
0035980098
-
Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7
-
Kawarabayasi, Y., Y. Hino, H. Horikawa, K. Jin-no, M. Takahashi, M. Sekine, S. Baba, A. Ankai, H. Kosugi, A. Hosoyama, S. Fukui, Y. Nagai, K. Nishijima, R. Otsuka, H. Nakazawa, M. Takamiya, Y. Kato, T. Yoshizawa, T. Tanaka, Y. Kudoh, J. Yamazaki, N. Kushida, A. Oguchi, K. Aoki, S. Masuda, M. Yanagii, M. Nishimura, A. Yamagishi, T. Oshima, and H. Kikuchi. 2001. Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7. DNA Res. 8:123-140.
-
(2001)
DNA Res.
, vol.8
, pp. 123-140
-
-
Kawarabayasi, Y.1
Hino, Y.2
Horikawa, H.3
Jin-No, K.4
Takahashi, M.5
Sekine, M.6
Baba, S.7
Ankai, A.8
Kosugi, H.9
Hosoyama, A.10
Fukui, S.11
Nagai, Y.12
Nishijima, K.13
Otsuka, R.14
Nakazawa, H.15
Takamiya, M.16
Kato, Y.17
Yoshizawa, T.18
Tanaka, T.19
Kudoh, Y.20
Yamazaki, J.21
Kushida, N.22
Oguchi, A.23
Aoki, K.24
Masuda, S.25
Yanagii, M.26
Nishimura, M.27
Yamagishi, A.28
Oshima, T.29
Kikuchi, H.30
more..
-
29
-
-
0036360431
-
Natrialba magadii virus phiCh1: First complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon
-
Klein, R., U. Baranyi, N. Rossler, B. Greineder, H. Scholz, and A. Witte. 2002. Natrialba magadii virus phiCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon. Mol. Microbiol. 45:851-863.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 851-863
-
-
Klein, R.1
Baranyi, U.2
Rossler, N.3
Greineder, B.4
Scholz, H.5
Witte, A.6
-
30
-
-
0036782099
-
Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 a resolution
-
Kuhn, P., S. A. Lesley, I. I. Mathews, J. M. Canaves, L. S. Brinen, X. Dai, A. M. Deacon, M. A. Elsliger, S. Eshaghi, R. Floyd, A. Godzik, C. Grittini, S. K. Grzechnik, C. Guda, K. O. Hodgson, L. Jaroszewski, C. Karlak, H. E. Klock, E. Koesema, J. M. Kovarik, A. T. Kreusch, D. McMullan, T. M. McPhillips, M. A. Miller, M. Miller, A. Morse, K. Moy, J. Ouyang, A. Robb, K. Rodrigues, T. L. Selby, G. Spraggon, R. C. Stevens, S. S. Taylor, H. van den Bedem, J. Velasquez, J. Vincent, X. Wang, B. West, G. Wolf, J. Wooley, and I. A. Wilson. 2002. Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution. Proteins 49:142-145.
-
(2002)
Proteins
, vol.49
, pp. 142-145
-
-
Kuhn, P.1
Lesley, S.A.2
Mathews, I.I.3
Canaves, J.M.4
Brinen, L.S.5
Dai, X.6
Deacon, A.M.7
Elsliger, M.A.8
Eshaghi, S.9
Floyd, R.10
Godzik, A.11
Grittini, C.12
Grzechnik, S.K.13
Guda, C.14
Hodgson, K.O.15
Jaroszewski, L.16
Karlak, C.17
Klock, H.E.18
Koesema, E.19
Kovarik, J.M.20
Kreusch, A.T.21
McMullan, D.22
McPhillips, T.M.23
Miller, M.A.24
Miller, M.25
Morse, A.26
Moy, K.27
Ouyang, J.28
Robb, A.29
Rodrigues, K.30
Selby, T.L.31
Spraggon, G.32
Stevens, R.C.33
Taylor, S.S.34
Van Den Bedem, H.35
Velasquez, J.36
Vincent, J.37
Wang, X.38
West, B.39
Wolf, G.40
Wooley, J.41
Wilson, I.A.42
more..
-
31
-
-
0036086410
-
Recent improvements to the SMART domain-based sequence annotation resource
-
Letunic, I., L. Goodstadt, N. J. Dickens, T. Doerks, J. Schultz, R. Mott, F. Ciccarelli, R. R. Copley, C. P. Ponting, and P. Bork. 2002. Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res. 30:242-244.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 242-244
-
-
Letunic, I.1
Goodstadt, L.2
Dickens, N.J.3
Doerks, T.4
Schultz, J.5
Mott, R.6
Ciccarelli, F.7
Copley, R.R.8
Ponting, C.P.9
Bork, P.10
-
32
-
-
0028841409
-
Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes
-
Malone, T., R. M. Blumenthal, and X. Cheng. 1995. Structure-guided analysis reveals nine sequence motifs conserved among DNA amino- methyltransferases, and suggests a catalytic mechanism for these enzymes. J. Mol. Biol. 253:618-632.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 618-632
-
-
Malone, T.1
Blumenthal, R.M.2
Cheng, X.3
-
33
-
-
0037252683
-
CDD: A curated Entrez database of conserved domain alignments
-
Marchler-Bauer, A., J. B. Anderson, C. DeWeese-Scott, N. D. Fedorova, L. Y. Geer, S. He, D. I. Hurwitz, J. D. Jackson, A. R. Jacobs, C. J. Lanczycki, C. A. Liebert, C. Liu, T. Madej, G. H. Marchler, R. Mazurader, A. N. Nikolskaya, A. R. Panchenko, B. S. Rao, B. A. Shoemaker, V. Simonyan, J. S. Song, P. A. Thiessen, S. Vasudevan, Y. Wang, R. A. Yamashita, J. J. Yin, and S. H. Bryant. 2003. "CDD: a curated Entrez database of conserved domain alignments". Nucleic Acids Res. 31:383-387.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Deweese-Scott, C.3
Fedorova, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
Liebert, C.A.11
Liu, C.12
Madej, T.13
Marchler, G.H.14
Mazurader, R.15
Nikolskaya, A.N.16
Panchenko, A.R.17
Rao, B.S.18
Shoemaker, B.A.19
Simonyan, V.20
Song, J.S.21
Thiessen, P.A.22
Vasudevan, S.23
Wang, Y.24
Yamashita, R.A.25
Yin, J.J.26
Bryant, S.H.27
more..
-
34
-
-
0000264642
-
SAV1, a temperate U.V. inducible DNA virus like particle from the archaebacterium Sulfolobus acidocaldarius B12
-
Martin, A., S. Yeats, D. Janekovic, W.-D. Reiter, W. Aicher, and W. Zillig. 1984. SAV1, a temperate U.V. inducible DNA virus like particle from the archaebacterium Sulfolobus acidocaldarius B12. EMBO J. 3:2165-2168.
-
(1984)
EMBO J.
, vol.3
, pp. 2165-2168
-
-
Martin, A.1
Yeats, S.2
Janekovic, D.3
Reiter, W.-D.4
Aicher, W.5
Zillig, W.6
-
35
-
-
0028060576
-
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases
-
McClelland, M., M. Nelson, and E. Raschke. 1994. Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. 22:3640-3659.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3640-3659
-
-
McClelland, M.1
Nelson, M.2
Raschke, E.3
-
36
-
-
0031685558
-
Characterization of an extremely thermostable restriction enzyme, PspGI, from a Pyrococcus strain and cloning of the PspGI restriction-modification system in Escherichia coli
-
Morgan, R., J. Xiao, and S. Xu. 1998. Characterization of an extremely thermostable restriction enzyme, PspGI, from a Pyrococcus strain and cloning of the PspGI restriction-modification system in Escherichia coli. Appl. Environ. Microbiol. 64:3669-3673.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3669-3673
-
-
Morgan, R.1
Xiao, J.2
Xu, S.3
-
37
-
-
0037025191
-
An alternative flavin-dependent mechanism for thymidylate synthesis
-
Myllykallio, H., G. Lipowski, D. Leduc, J. Filee, P. Forterre, and U. Liebl. 2002. An alternative flavin-dependent mechanism for thymidylate synthesis. Science 297:105-107.
-
(2002)
Science
, vol.297
, pp. 105-107
-
-
Myllykallio, H.1
Lipowski, G.2
Leduc, D.3
Filee, J.4
Forterre, P.5
Liebl, U.6
-
38
-
-
0038659759
-
Similarities and differences among 105 members of the Int family of site-specific recombinases
-
Nunes-Duby, S. E., H. J. Kwon, R. S. Tirumalai, T. Ellenberger, and A. Landy. 1998. Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res. 26:391-406.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 391-406
-
-
Nunes-Duby, S.E.1
Kwon, H.J.2
Tirumalai, R.S.3
Ellenberger, T.4
Landy, A.5
-
39
-
-
0035694680
-
Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: Relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses
-
Peng, X., H. Blum, Q. She, S. Mallok, K. Brugger, R. A. Garrett, W. Zillig, and D. Prangishvili. 2001. Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses. Virology 291:226-234.
-
(2001)
Virology
, vol.291
, pp. 226-234
-
-
Peng, X.1
Blum, H.2
She, Q.3
Mallok, S.4
Brugger, K.5
Garrett, R.A.6
Zillig, W.7
Prangishvili, D.8
-
40
-
-
0032513231
-
Biochemical and phylogenetic characterization of the dUTPase from the archaeal virus SIRV
-
Prangishvili, D., H. P. Klenk, G. Jakobs, A. Schmiechen, C. Hanselmann, I. Holz, and W. Zillig. 1998. Biochemical and phylogenetic characterization of the dUTPase from the archaeal virus SIRV. J. Biol. Chem. 273:6024-6029.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 6024-6029
-
-
Prangishvili, D.1
Klenk, H.P.2
Jakobs, G.3
Schmiechen, A.4
Hanselmann, C.5
Holz, I.6
Zillig, W.7
-
41
-
-
0035006181
-
Viruses of the extremely thermophilic archaeon Sulfolobus
-
Prangishvili, D., K. Stedman, and W. Zillig. 2001. Viruses of the extremely thermophilic archaeon Sulfolobus. Trends Microbiol. 9: 39-43.
-
(2001)
Trends Microbiol.
, vol.9
, pp. 39-43
-
-
Prangishvili, D.1
Stedman, K.2
Zillig, W.3
-
42
-
-
0037716574
-
Evolutionary insights from studies on viruses of hyperthermophilic archaea
-
Prangishvili, D. 2003. Evolutionary insights from studies on viruses of hyperthermophilic archaea. Res. Microbiol. 154:289-294.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 289-294
-
-
Prangishvili, D.1
-
43
-
-
0036922941
-
Remarkable morphological diversity of viruses and virus-like particles in hot terrestrial environments
-
Rachel, R., M. Bettstetter, B. P. Hedlund, M. Haring, A. Kessler, K. O. Stetter, and D. Prangishvili. 2002. Remarkable morphological diversity of viruses and virus-like particles in hot terrestrial environments. Arch. Virol. 147:2419-2429.
-
(2002)
Arch. Virol.
, vol.147
, pp. 2419-2429
-
-
Rachel, R.1
Bettstetter, M.2
Hedlund, B.P.3
Haring, M.4
Kessler, A.5
Stetter, K.O.6
Prangishvili, D.7
-
44
-
-
0023148012
-
Identification and characterization of the genes encoding three structural proteins of the Sulfolobus virus-like particle SSV1
-
Reiter, W. D., P. Palm, A. Henschen, F. Lottspeich, W. Zillig, and B. Grampp. 1987. Identification and characterization of the genes encoding three structural proteins of the Sulfolobus virus-like particle SSV1. Mol. Gen. Genet. 206:144-153.
-
(1987)
Mol. Gen. Genet.
, vol.206
, pp. 144-153
-
-
Reiter, W.D.1
Palm, P.2
Henschen, A.3
Lottspeich, F.4
Zillig, W.5
Grampp, B.6
-
45
-
-
0024283940
-
Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters
-
Reiter, W. D., P. Palm, and W. Zillig. 1988. Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters. Nucleic Acids Res. 16:1-19.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 1-19
-
-
Reiter, W.D.1
Palm, P.2
Zillig, W.3
-
46
-
-
0024967060
-
Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements
-
Reiter, W. D., P. Palm, and S. Yeats. 1989. Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Res. 17:1907-1914.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 1907-1914
-
-
Reiter, W.D.1
Palm, P.2
Yeats, S.3
-
47
-
-
0035818531
-
Viruses from extreme thermal environments
-
Rice, G., K. Stedman, J. Snyder, B. Wiedenheft, D. Willits, S. Brumfield, T. McDermott, and M. J. Young. 2001. Viruses from extreme thermal environments. Proc. Natl. Acad. Sci. USA 98:13341-13345.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 13341-13345
-
-
Rice, G.1
Stedman, K.2
Snyder, J.3
Wiedenheft, B.4
Willits, D.5
Brumfield, S.6
McDermott, T.7
Young, M.J.8
-
48
-
-
2442686734
-
The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life
-
Rice, G., L. Tang, K. Stedman, F. Roberto, J. Spuhler, E. Gillitzer, J. E. Johnson, T. Douglas, and M. Young. 2004. The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life. Proc. Natl. Acad. Sci. USA 101:7716-7720.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7716-7720
-
-
Rice, G.1
Tang, L.2
Stedman, K.3
Roberto, F.4
Spuhler, J.5
Gillitzer, E.6
Johnson, J.E.7
Douglas, T.8
Young, M.9
-
49
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual. 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
50
-
-
0032213855
-
Genetic profile of pNOB8 from Sulfolobus: The first conjugative plasmid from an archaeon
-
She, Q., H. Phan, R. A. Garrett, S.-V. Albers, K. M. Stedman, and W. Zillig. 1998. Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles 2:417-425.
-
(1998)
Extremophiles
, vol.2
, pp. 417-425
-
-
She, Q.1
Phan, H.2
Garrett, R.A.3
Albers, S.-V.4
Stedman, K.M.5
Zillig, W.6
-
51
-
-
0034945083
-
The complete genome of the crenarchaeote Sulfolobus solfataricus P2
-
She, Q., R. K. Singh, F. Confalonieri, Y. Zivanovic, G. Allard, M. J. Awayez, C. C. Chan-Weiher, I. G. Clausen, B. A. Curtis, A. De Moors, G. Erauso, C. Fletcher, P. M. Gordon, I. Heikamp-de Jong, A. C. Jeffries, C. J. Kozera, N. Medina, X. Peng, H. P. Thi-Ngoc, P. Redder, M. E. Schenk, C. Theriault, N. Tolstrup, R. L. Charlebois, W. F. Doolittle, M. Duguet, T. Gaasterland, R. A. Garrett, M. A. Ragan, C. W. Sensen, and J. Van der Oost. 2001. The complete genome of the crenarchaeote Sulfolobus solfataricus P2. Proc. Natl. Acad. Sci. USA 98:7835-7840.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7835-7840
-
-
She, Q.1
Singh, R.K.2
Confalonieri, F.3
Zivanovic, Y.4
Allard, G.5
Awayez, M.J.6
Chan-Weiher, C.C.7
Clausen, I.G.8
Curtis, B.A.9
De Moors, A.10
Erauso, G.11
Fletcher, C.12
Gordon, P.M.13
Heikamp-De Jong, I.14
Jeffries, A.C.15
Kozera, C.J.16
Medina, N.17
Peng, X.18
Thi-Ngoc, H.P.19
Redder, P.20
Schenk, M.E.21
Theriault, C.22
Tolstrup, N.23
Charlebois, R.L.24
Doolittle, W.F.25
Duguet, M.26
Gaasterland, T.27
Garrett, R.A.28
Ragan, M.A.29
Sensen, C.W.30
Van Der Oost, J.31
more..
-
52
-
-
0036340447
-
Archaeal integrative elements and their impact on evolution
-
She, Q., K. Brugger, and L. Chen. 2002. Archaeal integrative elements and their impact on evolution. Res. Microbiol. 153:325-332.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 325-332
-
-
She, Q.1
Brugger, K.2
Chen, L.3
-
53
-
-
2342464252
-
Archaeal integrases and mechanisms of gene capture
-
She, Q., B. Shen, and L. Chen. 2004. Archaeal integrases and mechanisms of gene capture. Biochem. Soc. Trans. 32:222-226.
-
(2004)
Biochem. Soc. Trans.
, vol.32
, pp. 222-226
-
-
She, Q.1
Shen, B.2
Chen, L.3
-
54
-
-
0141518169
-
Viruses of hyperthermophilic Archaea
-
Snyder, J. C., K. Stedman, G. Rice, B. Wiedenheft, J. Spuhler, and M. J. Young. 2003. Viruses of hyperthermophilic Archaea. Res. Microbiol. 154:474-482.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 474-482
-
-
Snyder, J.C.1
Stedman, K.2
Rice, G.3
Wiedenheft, B.4
Spuhler, J.5
Young, M.J.6
-
55
-
-
0038054284
-
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2
-
Stedman, K. M., Q. She, H. Phan, H. P. Arnold, I. Holz, R. A. Garrett, and W. Zillig. 2003. Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2. Res. Microbiol. 154:295-302.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 295-302
-
-
Stedman, K.M.1
She, Q.2
Phan, H.3
Arnold, H.P.4
Holz, I.5
Garrett, R.A.6
Zillig, W.7
-
56
-
-
0034202785
-
Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus
-
Tolstrup, N., C. W. Sensen, R. A. Garrett, and I. G. Clausen. 2000. Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus. Extremophiles 4:175-179.
-
(2000)
Extremophiles
, vol.4
, pp. 175-179
-
-
Tolstrup, N.1
Sensen, C.W.2
Garrett, R.A.3
Clausen, I.G.4
-
57
-
-
0023833829
-
Isolation of a halobacterial phage with a fully cytosine-methylated genome
-
Vogelsang-Wenke, H., and D. Oesterheld. 1988. Isolation of a halobacterial phage with a fully cytosine-methylated genome. Mol. Gen. Genet. 211:407-414.
-
(1988)
Mol. Gen. Genet.
, vol.211
, pp. 407-414
-
-
Vogelsang-Wenke, H.1
Oesterheld, D.2
-
58
-
-
0842304503
-
Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses
-
Wiedenheft, B., K. Stedman, F. Roberto, D. Willits, A. K. Gleske, L. Zoeller, J. Snyder, T. Douglas, and M. Young. 2004. Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses. J. Virol. 78:1954-1961.
-
(2004)
J. Virol.
, vol.78
, pp. 1954-1961
-
-
Wiedenheft, B.1
Stedman, K.2
Roberto, F.3
Willits, D.4
Gleske, A.K.5
Zoeller, L.6
Snyder, J.7
Douglas, T.8
Young, M.9
-
59
-
-
0031018738
-
Characterization of Natronobacterium magadii phage phi Ch1, a unique archaeal phage containing DNA and RNA
-
Witte, A., U. Baranyi, R. Klein, M. Sulzner, C. Luo, G. Wanner, D. H. Kruger, and W. Lubitz. 1997. Characterization of Natronobacterium magadii phage phi Ch1, a unique archaeal phage containing DNA and RNA. Mol. Microbiol. 23:603-616.
-
(1997)
Mol. Microbiol.
, vol.23
, pp. 603-616
-
-
Witte, A.1
Baranyi, U.2
Klein, R.3
Sulzner, M.4
Luo, C.5
Wanner, G.6
Kruger, D.H.7
Lubitz, W.8
-
61
-
-
4544298512
-
Sulfolobus tengchongensis sp. nov., a novel thermoacidophilic archaeon isolated from a hot spring in Tengchong, China
-
Xiang, X., X. Dong, and L. Huang. 2003. Sulfolobus tengchongensis sp. nov., a novel thermoacidophilic archaeon isolated from a hot spring in Tengchong, China. Extremophiles 7:493-498.
-
(2003)
Extremophiles
, vol.7
, pp. 493-498
-
-
Xiang, X.1
Dong, X.2
Huang, L.3
-
62
-
-
0028268367
-
Screening for Sulfolobales, their plasmids and their viruses in Icelandic solfataras
-
Zillig, W., A. Kletzin, C. Schleper, I. Holz, D. Janekovic, J. Hain, M. Lanzendorfer, and J. K. Kristjansson. 1994. Screening for Sulfolobales, their plasmids and their viruses in Icelandic solfataras. Syst. Appl. Microbiol. 16:609-628.
-
(1994)
Syst. Appl. Microbiol.
, vol.16
, pp. 609-628
-
-
Zillig, W.1
Kletzin, A.2
Schleper, C.3
Holz, I.4
Janekovic, D.5
Hain, J.6
Lanzendorfer, M.7
Kristjansson, J.K.8
-
63
-
-
18144447330
-
Genetic elements in the extremely thermophilic archaeon Sulfolobus
-
Zillig, W., H. P. Arnold, I. Holz, D. Prangishvili, A. Schweier, K. Stedman, Q. She, H. Phan, R. Garrett, and J. K. Kristjansson. 1998. Genetic elements in the extremely thermophilic archaeon Sulfolobus. Extremophiles 2:131-140.
-
(1998)
Extremophiles
, vol.2
, pp. 131-140
-
-
Zillig, W.1
Arnold, H.P.2
Holz, I.3
Prangishvili, D.4
Schweier, A.5
Stedman, K.6
She, Q.7
Phan, H.8
Garrett, R.9
Kristjansson, J.K.10
|