Multiple subsets of side-chain packing in partially folded states of α-lactalbumins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 25, 2005, Pages 8899-8904

  Mok, K Hun ^a   Nagashima, Toshio ^a,c   Day, Iain J ^a,d   Hore, P J ^a   Dobson, Christopher M ^b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c RIKEN   (Japan)

^d UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

Chemically induced dynamic nuclear polarization; Hydrophobic duster; Molten globule; Protein folding; Pulse labeling

Indexed keywords

ALPHA LACTALBUMIN; HISTIDINE; TRYPTOPHAN; TYROSINE;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL LABELING; COW; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHOTOCHEMISTRY; POLARIZATION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE;

AMINO ACID SEQUENCE; ANIMALS; CATTLE; HUMANS; LACTALBUMIN; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING;

BOVINAE;

EID: 21144446625     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0500661102     Document Type: Article

References (56)

1. Fersht, A. R. (1999) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding (Freeman, New York).
2. Dobson, C. M. (2003) Nature 426, 884-890.
3. Bryngelson, J. D., Onuchic, J. N., Socci, N. D. & Wolynes, P. G. (1995) Proteins Struct. Funct. Genet. 21, 167-195.
4. Dobson, C. M., Sali, A. & Karplus, M. (1998) Angew. Chem. Int. Ed. 37, 868-893.
5. Vendruscolo, M., Paci, E., Dobson, C. M. & Karplus, M. (2001) Nature 409, 641-645.
6. Vendruscolo, M., Paci, E., Karplus, M. & Dobson, C. M. (2003) Proc. Natl. Acad Sci. USA 100, 14817-14821.
7. Lindorff-Larsen, K., Vendruscolo, M., Paci, E. & Dobson, C. M. (2004) Nat. Struct. Mol. Biol. 11, 443-449.
8. Ptitsyn, O. B. (1995) Adv. Protein Chem. 47, 83-229.
9. Arai, M. & Kuwajima, K. (2000) Adv. Protein Chem. 53, 209-282.
10. Frieden, C. (2003) Biochemistry 42, 12439-12446.
11. Redfield, C. (2004) Methods 34, 121-132.
12. Dyson, H. J. & Wright, P. E. (2004) Chem. Rev. 104, 3607-3622.
13. Hore, P. J., Winder, S. L., Roberts, C. H. & Dobson, C. M. (1997) J. Am. Chem. Soc. 119, 5049-5050.
14. Mok, K. H., Nagashima, T., Day, I. J., Jones, J. A., Jones, C. J. V., Dobson, C. M. & Hore, P. J. (2003) J. Am. Chem. Soc. 125, 12484-12492.
15. Balbach, J., Forge, V., Lau, W. S., Jones, J. A., van Nuland, N. A. J. & Dobson, C. M. (1997) Proc. Natl. Acad. Sci. USA 94, 7182-7185.
16. Lyon, C. E., Suh, E.-S., Dobson, C. M. & Hore, P. J. (2002) J. Am. Chem. Soc. 124, 13018-13024.
17. Hore, P. J. &. Broadhurst, R. W. (1993) Prog. NMR Spectrosc. 25, 345-402.
18. Mok, K. H. & Hore, P. J. (2004) Methods 34, 75-87.
19. Gustafsson, L., Leijonhufvud, I., Aronsson, A., Mossberg, A.-K. & Svanborg, C. (2004) N. Engl. J. Med. 350, 2663-2672.
20. Kuwajima, K., Nitta, K., Yoneyama, M. & Sugai, S. (1976) J. Mol. Biol. 106, 359-373.
21. Dolgikh, D. A., Gilmanshin, R. I., Brazhnikov, E. V., Bychkova, V. E., Semisotnov, G. V., Venyaminov, S. Y. & Ptitsyn, O. B. (1981) FEBS Lett. 136, 311-315.
22. Kataoka, M., Kuwajima, K., Tokunaga, F. & Goto, Y. (1997) Protein Sci. 6, 422-430.
23. Chaudhuri, T. K., Arai, M., Terada, T. P., Ikura, T. & Kuwajima, K. (2000) Biochemistry 39, 15643-15651.
24. Haase, A., Frahm, J., Hanicke, W. & Matthaei, D. (1985) Phys. Med. Biol. 30, 341-344.
25. Alexandrescu, A. T., Broadhurst, R. W., Wormald, C., Chyan, C.-L., Baum, J. & Dobson, C. M. (1992) Eur. J. Biochem. 210, 699-709.
26. Hubbard, S. J., Campbell, S. F. & Thornton, J. M. (1991) J. Mol. Biol. 220, 507-530.
27. Chrysina, E. D., Brew, K. & Acharya, K. R. (2000) J. Biol. Chem. 275, 37021-37029.
28. Ren, J., Stuart, D. I. & Acharya, K. R. (1993) J. Biol. Chem. 268, 19292-19298.
29. Maeda, K., Lyon, C. E., Lopez, J. J., Cemazar, M., Dobson, C. M. & Hore, P. J. (2000) J. Biomol. NMR 16, 235-244.
30. Improta, S., Molinari, H., Pastore, A., Consonni, R. & Zetta, L. (1995) Eur. J. Biochem. 227, 87-96.
31. Wirmer, J., Kühn, T. & Schwalbe, H. (2001) Angew. Chem. Int. Ed. 40, 4248-4251.
32. Ikeguchi, M., Kuwajima, K., Mitani, M. & Sugai, S. (1986) Biochemistry 25, 6965-6972.
33. Troullier, A., Reinstädler, D., Dupont, Y., Naumann, D. & Forge, V. (2000) Nat. Struct. Biol. 7, 78-86.
34. Alexandrescu, A. T., Evans, P. A., Pitkeathly, M., Baum, J. & Dobson, C. M. (1993) Biochemistry 32, 1707-1718.
35. Wijesinha-Bettoni, R., Dobson, C. M. & Redfield, C. (2001) J. Mol. Biol. 312, 261-273.
36. Schulman, B. A., Kim, P. S., Dobson, C. M. & Redfield, C. (1997) Nat. Struct. Biol. 4, 630-634.
37. Chyan, C.-L., Wormald, C., Dobson, C. M., Evans, P. A. & Baum, J. (1993) Biochemistry 32, 5681-5691.
38. Peng, Z.-y., Wu, L. C. & Kim, P. S. (1995) Biochemistry 34, 3248-3252.
39. Demarest, S. J., Horng, J.-C. & Raleigh, D. P. (2001) Proteins Struct. Funct. Genet. 42, 237-242.
40. Redfield, C., Schulman, B. A., Milhollen, M. A., Kim, P. S. & Dobson, C. M. (1999) Nat. Struct. Biol. 6, 948-952.
41. Chowdhury, F. A. & Raleigh, D. P. (2005) Protein Sci. 14, 89-96.
42. Quezada, C. M., Schulman, B. A., Froggatt, J. J., Dobson, C. M. & Redfield, C. (2004) J. Mol. Biol. 338, 149-158.
43. Bai, P., Luo, L. & Peng, Z.-y. (2000) Biochemistry 39, 372-380.
44. Chakraborty, S., Utah, V., Bai, P., Luo, L., Haas, E. & Peng, Z.-y. (2001) Biochemistry 40, 7228-7238.
45. Klein-Seetharaman, J., Oikawa, M., Grimshaw, S. B., Wirmer, J., Duchardt, E., Ueda, T., Imoto, T., Smith, L. J., Dobson, C. M. & Schwalbe, H. (2002) Science 295, 1719-1722.
46. Mok, Y.-K., Alonso, L. G., Lima, L. M. T. R., Bycroft, M. & de Prat-Gay, G. (2000) Protein Sci. 9, 799-811.
47. Crowhurst, K. A. & Forman-Kay, J. D. (2003) Biochemistry 42, 8687-8695.
48. Cho, J.-H., Sato, S. & Raleigh, D. P. (2004) J. Mol. Biol. 338, 827-837.
49. Song, J., Bai, P., Luo, L. & Peng, Z.-y. (1998) J. Mol. Biol. 280, 167-174.
50. Wu, L. C. & Kim, P. S. (1997) Proc. Natl. Acad. Sci. USA 94, 14314-14319.
51. Paci, E., Smith, L. J., Dobson, C. M. & Karplus, M. (2001) J. Mol. Biol. 306, 329-347.
52. Chiti, F., Taddei, N., Baroni, F., Capanni, C., Stefani, M., Ramponi, G. & Dobson, C. M. (2002) Nat. Struct. Biol. 9, 137-143.
53. Svensson, M., Hakansson, A., Mossberg, A.-K., Linse, S. & Svanborg, C. (2000) Proc. Natl. Acad. Sci. USA 97, 4221-4226.
54. Goers, J., Permyakov, S. E., Permyakov, E. A., Uversky, V. N. & Fink, A. L. (2002) Biochemistry 41, 12456-12551.
55. Lindorff-Larsen, K., Best, R. B., DePristo, M. A., Dobson, C. M. & Vendruscolo, M. (2005) Nature 433, 128-132.
56. Koradi, R., Billeter, M. & Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.