Photo-CIDNP NMR methods for studying protein folding

Methods

Volumn 34, Issue 1, 2004, Pages 75-87

  Mok, K Hun ^a   Hore, P J ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

CIDNP; Injection; Nuclear magnetic resonance; Nuclear polarization; Photosensitizer; Protein folding; Pulse labeling; Real time; Solvent accessibility

Indexed keywords

HISTIDINE; TRYPTOPHAN; TYROSINE;

ANALYTIC METHOD; ARTICLE; CHEMICALLY INDUCED DYNAMIC NUCLEAR POLARIZATION; NITROGEN NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE; PHOTOCHEMISTRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE;

HISTIDINE; MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN FOLDING; SOLUTIONS; TRYPTOPHAN; TYROSINE;

EID: 3242875302     PISSN: 10462023     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ymeth.2004.03.006     Document Type: Article

References (72)

1. Bargon J., Fischer H., Johnsen U. Z. Naturforsch. A. 22:1967;1551-1555
2. Ward H.R., Lawler R.G. J. Am. Chem. Soc. 89:1967;5518-5519
3. Kaptein R., Dijkstra K., Nicolay K. Nature. 274:1978;293-294
4. Kaptein R. Berliner L.J., Reuben J. Biological Magnetic Resonance. vol. 4:1982;145-191 Plenum Press, New York
5. Hore P.J., Broadhurst R.W. Progr. NMR Spectrosc. 25:1993;345-402
6. van Nuland N.A.J., Forge V., Balbach J., Dobson C.M. Acc. Chem. Res. 31:1998;773-780
7. Dobson C.M., Hore P.J. Nat. Struct. Biol., NMR Suppl. 1998;504-507
8. Hore P.J., Winder S.L., Roberts C.H., Dobson C.M. J. Am. Chem. Soc. 119:1997;5049-5050
9. Maeda K., Lyon C.E., Lopez J.J., Cemazar M., Dobson C.M., Hore P.J. J. Biomol. NMR. 16:2000;235-244
10. Mok K.H., Nagashima T., Day I.J., Jones J.A., Jones C.J.V., Dobson C.M., Hore P.J. J. Am. Chem. Soc. 125:2003;12484-12492
11. Goez M. Concepts Magn. Reson. 7:1995;69-86
12. Goez M. Adv. Photochem. 23:1997;63-163
13. Rubinstenn G., Vuister G.W., Mulder F.A.A., Dux P.E., Boelens R., Hellingwerf K.J., Kaptein R. Nat. Struct. Biol. 5:1998;568-570
14. Harper S.M., Neil L.C., Gardner K.H. Science. 301:2003;1541-1544
15. Rubinstenn G., Vuister G.W., Zwanenburg N., Hellingwerf K.J., Boelens R., Kaptein R. J. Magn. Reson. 137:1999;443-447
16. Harper S.M., Neil L.C., Day I.J., Hore P.J., Gardner K.H. J. Am. Chem. Soc. 126:2004;3390-3391
17. Closs G.L. J. Am. Chem. Soc. 91:1969;4552-4554
18. Kaptein R., Oosterhoff L.J. Chem. Phys. Lett. 4:1969;195-197
19. Kaptein R., Oosterhoff L.J. Chem. Phys. Lett. 4:1969;214-216
20. L.T. Muus, P.W. Atkins, K.A. McLauchlan, J.B. Pedersen (Eds.), Chemically Induced Magnetic Polarization, D. Reidel, Dordrecht, Holland, 1977
21. Salikhov K.M., Molin Y.N., Sagdeev R.Z., Buchachenko A.L. Molin Y.N. Spin Polarization and Magnetic Effects in Radical Reactions. 1984;Elsevier, Amsterdam
22. Closs G.L. Waugh J.S. Advances in Magnetic Resonance. vol. 7:1974;157-229 Academic Press, New York
23. Kaptein R. Williams G.H. Advances in Free-Radical Chemistry. vol. 5:1975;319-380 Elek Science, London
24. Lawler R.G. Progr. NMR Spectrosc. 9:1975;145-210
25. Freed J.H., Pedersen J.B. Waugh J.S. Advances in Magnetic Resonance. vol. 8:1976;1-84 Academic Press, New York
26. Muszkat K.A., Wismontski-Knittel T. Biochemistry. 24:1985;5416-5421
27. Tsentalovich Y.P., Lopez J.J., Hore P.J., Sagdeev R.Z. Spectrochim. Acta A. 58:2002;2043-2050
28. Kaptein R. Chem. Commun. 1971;732-733
29. Alexandrescu A.T., Broadhurst R.W., Wormald C., Chyan C.-L., Baum J., Dobson C.M. Eur. J. Biochem. 210:1992;699-709
30. Improta S., Molinari H., Pastore A., Consonni R., Zetta L. Eur. J. Biochem. 227:1995;78-86
31. Lyon C.E., Suh E.-S., Dobson C.M., Hore P.J. J. Am. Chem. Soc. 124:2002;13018-13024
32. Chrysina E.D., Brew K., Acharya K.R. J. Biol. Chem. 275:2000;37021-37029
33. Winder S.L., Broadhurst R.W., Hore P.J. Spectrochim. Acta A. 51:1995;1753-1761
34. Baum J., Dobson C.M., Evans P.A., Hanley C. Biochemistry. 28:1989;7-13
35. Schulman B.A., Redfield C., Peng Z.-y., Dobson C.M., Kim P.S. J. Mol. Biol. 253:1995;651-657
36. Kuwajima K. FASEB J. 10:1996;102-109
37. Improta S., Molinari H., Pastore A., Consonni R., Zetta L. Eur. J. Biochem. 227:1995;87-96
38. Morozova O.B., Yurkovskaya A.V., Tsentalovich Y.P., Forbes M.D.E., Sagdeev R.Z. J. Phys. Chem. B. 106:2002;1455-1460
39. Morozova O.B., Yurkovskaya A.V., Tsentalovich Y.P., Forbes M.D.E., Hore P.J., Sagdeev R.Z. Mol. Phys. 100:2002;1187-1195
40. Craven C.J., Derix N.M., Hendriks J., Boelens R., Hellingwerf K.J., Kaptein R. Biochemistry. 39:2000;14392-14399
41. Scheffler J.E., Cottrell C.E., Berliner L.J. J. Magn. Reson. 63:1985;199-201
42. Kühn T., Schwalbe H. J. Am. Chem. Soc. 122:2000;6169-6174
43. Wirmer J., Kühn T., Schwalbe H. Angew. Chem. Int. Ed. 40:2001;4248-4251
44. Haase A., Frahm J., Hänicke W., Matthaei D. Phys. Med. Biol. 30:1985;341-344
45. Azuaga A.I., Canet D., Smeenk G., Berends R., Titgemeijer F., Duurkens R., Mateo P.L., Scheek R.M., Robillard G.T., Dobson C.M., van Nuland N.A.J. Biochemistry. 42:2003;4883-4895
46. Canet D., Lyon C.E., Scheek R.M., Robillard G.T., Dobson C.M., Hore P.J., van Nuland N.A.J. J. Mol. Biol. 330:2003;397-407
47. Scheek R.M., Stob S., Boelens R., Dijkstra K., Kaptein R. Faraday Discuss Chem. Soc. 78:1984;245-256
48. Scheek R.M., Stob S., Boelens R., Dijkstra K., Kaptein R. J. Am. Chem. Soc. 107:1985;705-706
49. Schäublin S., Wokaun A., Ernst R.R. J. Magn. Reson. 27:1977;273-302
50. Hwang T.-L., Shaka A.J. J. Magn. Reson. A. 112:1995;275-279
51. Barbieri R., Hore P.J., Luchinat C., Pierattelli R. J. Biomol. NMR. 23:2002;303-309
52. Redfield C., Dobson C.M., Scheek R.M., Stob S., Kaptein R. FEBS Lett. 185:1985;248-252
53. C.E. Lyon, D.Phil. thesis, University of Oxford, Oxford, UK, 1999
54. Lyon C.E., Jones J.A., Redfield C., Dobson C.M., Hore P.J. J. Am. Chem. Soc. 121:1999;6505-6506
55. Morris G.A., Freeman R. J. Am. Chem. Soc. 101:1979;760-762
56. Kuprov I., Hore P.J. J. Magn. Reson. 168:2004;1-7
57. Vogt W. Free Radic. Biol. Med. 18:1995;93-105
58. Tsentalovich Y.P., Morozova O.B., Yurkovskaya A.V., Hore P.J. J. Phys. Chem. A. 103:1999;5362-5368
59. Tsentalovich Y.P., Morozova O.B. J. Photochem. Photobiol. A. 131:2000;33-40
60. Tsentalovich Y.P., Morozova O.B., Yurkovskaya A.V., Hore P.J., Sagdeev R.Z. J. Phys. Chem. A. 104:2000;6912-6916
61. Broadhurst R.W., Dobson C.M., Hore P.J., Radford S.E., Rees M.L. Biochemistry. 30:1991;405-412
62. Connolly P.J., Hoch J.C. J. Magn. Reson. 95:1991;165-173
63. Muszkat K.A., Khait I., Hayashi K., Tamiya N. Biochemistry. 23:1984;4913-4920
64. Klein-Seetharaman J., Oikawa M., Grimshaw S.B., Wirmer J., Duchardt E., Ueda T., Imoto T., Smith L.J., Dobson C.M., Schwalbe H. Science. 295:2002;1719-1722
65. Capaldi A.P., Kleanthous C., Radford S.E. Nat. Struct. Biol. 9:2002;209-215
66. Balbach J., Forge V., van Nuland N.A.J., Winder S.L., Hore P.J., Dobson C.M. Nat. Struct. Biol. 2:1995;865-870
67. Dobson C.M., Karplus M. Curr. Opin. Struct. Biol. 9:1999;92-101
68. Brockwell D.J., Smith D.A., Radford S.E. Curr. Opin. Struct. Biol. 10:2000;16-25
69. Dinner A.R., Sali A., Smith L.J., Dobson C.M., Karplus M. Trends Biochem. Sci. 25:2000;331-339
70. Ferguson N., Fersht A.R. Curr. Opin. Struct. Biol. 13:2003;75-81
71. J. Balbach, Methods, this issue
72. C. Redfield, Methods, this issue