-
2
-
-
0842324785
-
The nucleosome: From genomic organization to genomic regulation
-
Khorasanizadeh S: The nucleosome: from genomic organization to genomic regulation. Cell 2004, 116:259-272.
-
(2004)
Cell
, vol.116
, pp. 259-272
-
-
Khorasanizadeh, S.1
-
3
-
-
1042291299
-
The many colours of chromodomains
-
Brehm A, Tufteland KR, Aasland R, Becker PB: The many colours of chromodomains. BioEssays 2004, 26:133-140.
-
(2004)
BioEssays
, vol.26
, pp. 133-140
-
-
Brehm, A.1
Tufteland, K.R.2
Aasland, R.3
Becker, P.B.4
-
4
-
-
0037138363
-
Bromodomain: An acetyl-lysine binding domain
-
Zeng L, Zhou MM: Bromodomain: an acetyl-lysine binding domain. FEBS Lett 2002, 513:124-128.
-
(2002)
FEBS Lett.
, vol.513
, pp. 124-128
-
-
Zeng, L.1
Zhou, M.M.2
-
5
-
-
0037085264
-
Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3
-
Carmen AA, Milne L, Grunstein M: Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3. J Biol Chem 2002, 277:4778-4781.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4778-4781
-
-
Carmen, A.A.1
Milne, L.2
Grunstein, M.3
-
6
-
-
1042265480
-
The use of chromatin immunoprecipitation assays in genome-wide analyses of histone modifications
-
Bernstein BE, Humphrey EL, Liu CL, Schreiber SL: The use of chromatin immunoprecipitation assays in genome-wide analyses of histone modifications. Methods Enzymol 2004, 376:349-360.
-
(2004)
Methods Enzymol.
, vol.376
, pp. 349-360
-
-
Bernstein, B.E.1
Humphrey, E.L.2
Liu, C.L.3
Schreiber, S.L.4
-
7
-
-
1042276981
-
Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays
-
Robyr D, Kurdistani SK, Grunstein M: Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays. Methods Enzymol 2004, 376:289-304.
-
(2004)
Methods Enzymol.
, vol.376
, pp. 289-304
-
-
Robyr, D.1
Kurdistani, S.K.2
Grunstein, M.3
-
8
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee CK, Shibata Y, Rao B, Strahl BD, Lieb JD: Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 2004, 36:900-905.
-
(2004)
Nat. Genet.
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
9
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL: Global nucleosome occupancy in yeast. Genome Biol 2004, 5:R62.
-
(2004)
Genome Biol.
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
10
-
-
3543008920
-
High-resolution genome-wide mapping of histone modifications
-
Roh TY, Ngau WC, Cui K, Landsman D, Zhao K: High-resolution genome-wide mapping of histone modifications. Nat Biotechnol 2004, 22:1013-1016.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1013-1016
-
-
Roh, T.Y.1
Ngau, W.C.2
Cui, K.3
Landsman, D.4
Zhao, K.5
-
11
-
-
0038094502
-
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
-
Reinke H, Horz W: Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol Cell 2003, 11:1599-1607.
-
(2003)
Mol. Cell
, vol.11
, pp. 1599-1607
-
-
Reinke, H.1
Horz, W.2
-
12
-
-
0038094501
-
Nucleosomes unfold completely at a transcriptionally active promoter
-
Boeger H, Griesenbeck J, Strattan JS, Kornberg RD: Nucleosomes unfold completely at a transcriptionally active promoter. Mol Cell 2003, 11:1587-1598.
-
(2003)
Mol. Cell
, vol.11
, pp. 1587-1598
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
13
-
-
2942518343
-
Mapping global histone acetylation patterns to gene expression
-
Kurdistani SK, Tavazoie S, Grunstein M: Mapping global histone acetylation patterns to gene expression. Cell 2004, 117:721-733.
-
(2004)
Cell
, vol.117
, pp. 721-733
-
-
Kurdistani, S.K.1
Tavazoie, S.2
Grunstein, M.3
-
14
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
Schübeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, van Leeuwen F, Gottschling DE, O'Neill LP, Turner BM, Delrow J, et al.: The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev 2004, 18:1263-1271.
-
(2004)
Genes Dev.
, vol.18
, pp. 1263-1271
-
-
Schübeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
-
15
-
-
8644232564
-
Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays
-
Hanlon SE, Lieb JD: Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays. Curr Opin Genet Dev 2004, 14:697-705.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 697-705
-
-
Hanlon, S.E.1
Lieb, J.D.2
-
16
-
-
0033515426
-
Phosphorylation of histone H3 is required for proper chromosome condensation and segregation
-
Wei Y, Yu L, Bowen J, Gorovsky MA, Allis CD: Phosphorylation of histone H3 is required for proper chromosome condensation and segregation. Cell 1999, 97:99-109.
-
(1999)
Cell
, vol.97
, pp. 99-109
-
-
Wei, Y.1
Yu, L.2
Bowen, J.3
Gorovsky, M.A.4
Allis, C.D.5
-
17
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ 3rd, Gingeras TR, et al.: Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 2005, 120:169-181.
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas III, E.J.9
Gingeras, T.R.10
-
18
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
Robyr D, Suka Y, Xenarios I, Kurdistani SK, Wang A, Suka N, Grunstein M: Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell 2002, 109:437-446.
-
(2002)
Cell
, vol.109
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
Suka, N.6
Grunstein, M.7
-
19
-
-
6344270167
-
Global position and recruitment of HATs and HDACs in the yeast genome
-
Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, Rolfe A, Workman JL, Gifford DK, Young RA: Global position and recruitment of HATs and HDACs in the yeast genome. Mol Cell 2004, 16:199-209.
-
(2004)
Mol. Cell
, vol.16
, pp. 199-209
-
-
Robert, F.1
Pokholok, D.K.2
Hannett, N.M.3
Rinaldi, N.J.4
Chandy, M.5
Rolfe, A.6
Workman, J.L.7
Gifford, D.K.8
Young, R.A.9
-
20
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
Wang A, Kurdistani SK, Grunstein M: Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 2002, 298:1412-1414.
-
(2002)
Science
, vol.298
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
21
-
-
17244368913
-
Genomic characterization reveals a simple histone H4 acetylation code
-
Dion MF, Altschuler SJ, Wu LF, Rando OJ: Genomic characterization reveals a simple histone H4 acetylation code. Proc Natl Acad Sci USA 2005, 102:5501-5506.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5501-5506
-
-
Dion, M.F.1
Altschuler, S.J.2
Wu, L.F.3
Rando, O.J.4
-
22
-
-
0034839973
-
Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin
-
Suka N, Suka Y, Carmen AA, Wu J, Grunstein M: Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol Cell 2001, 8:473-479.
-
(2001)
Mol. Cell
, vol.8
, pp. 473-479
-
-
Suka, N.1
Suka, Y.2
Carmen, A.A.3
Wu, J.4
Grunstein, M.5
-
23
-
-
1642618325
-
Modulation of heat shock gene expression by the TAC 1 chromatin-modifying complex
-
Smith ST, Petruk S, Sedkov Y, Cho E, Tillib S, Canaani E, Mazo A: Modulation of heat shock gene expression by the TAC 1 chromatin-modifying complex. Nat Cell Biol 2004, 6:162-167.
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 162-167
-
-
Smith, S.T.1
Petruk, S.2
Sedkov, Y.3
Cho, E.4
Tillib, S.5
Canaani, E.6
Mazo, A.7
-
24
-
-
0038374526
-
Transcriptional elongation by RNA polymerase II and histone methylation
-
Gerber M, Shilatifard A: Transcriptional elongation by RNA polymerase II and histone methylation. J Biol Chem 2003, 278:26303-26306.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 26303-26306
-
-
Gerber, M.1
Shilatifard, A.2
-
25
-
-
0035800524
-
Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor
-
Wang H, Huang ZQ, Xia L, Feng Q, Erdjument-Bromage H, Strahl BD, Briggs SD, Allis CD, Wong J, Tempst P, et al.: Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor. Science 2001, 293:853-857.
-
(2001)
Science
, vol.293
, pp. 853-857
-
-
Wang, H.1
Huang, Z.Q.2
Xia, L.3
Feng, Q.4
Erdjument-Bromage, H.5
Strahl, B.D.6
Briggs, S.D.7
Allis, C.D.8
Wong, J.9
Tempst, P.10
-
26
-
-
0037074010
-
Signaling network model of chromatin
-
Schreiber SL, Bernstein BE: Signaling network model of chromatin. Cell 2002, 111:771-778.
-
(2002)
Cell
, vol.111
, pp. 771-778
-
-
Schreiber, S.L.1
Bernstein, B.E.2
-
27
-
-
0345708105
-
Methylation of histone H3 K4 mediates association of the Isw 1p ATPase with chromatin
-
Santos-Rosa H, Schneider R, Bernstein BE, Karabetsou N, Morillon A, Weise C, Schreiber SL, Mellor J, Kouzarides T: Methylation of histone H3 K4 mediates association of the Isw 1p ATPase with chromatin. Mol Cell 2003, 12:1325-1332.
-
(2003)
Mol. Cell
, vol.12
, pp. 1325-1332
-
-
Santos-Rosa, H.1
Schneider, R.2
Bernstein, B.E.3
Karabetsou, N.4
Morillon, A.5
Weise, C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
28
-
-
0344022572
-
Targeted recruitment of Set 1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng HH, Robert F, Young RA, Struhl K: Targeted recruitment of Set 1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 2003, 11:709-719.
-
(2003)
Mol. Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
29
-
-
0345016384
-
Isw 1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II
-
Morillon A, Karabetsou N, O'Sullivan J, Kent N, Proudfoot N, Mellor J: Isw 1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II. Cell 2003, 115:425-435.
-
(2003)
Cell
, vol.115
, pp. 425-435
-
-
Morillon, A.1
Karabetsou, N.2
O'Sullivan, J.3
Kent, N.4
Proudfoot, N.5
Mellor, J.6
-
30
-
-
0036649756
-
Genome-wide binding map of the histone deacetylase Rpd3 in yeast
-
Kurdistani SK, Robyr D, Tavazoie S, Grunstein M: Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nat Genet 2002, 31:248-254.
-
(2002)
Nat. Genet.
, vol.31
, pp. 248-254
-
-
Kurdistani, S.K.1
Robyr, D.2
Tavazoie, S.3
Grunstein, M.4
-
31
-
-
6444241134
-
Rpd3p relocation mediates a transcriptional response to rapamycin in yeast
-
Humphrey EL, Shamji AF, Bernstein BE, Schreiber SL: Rpd3p relocation mediates a transcriptional response to rapamycin in yeast. Chem Biol 2004, 11:295-299.
-
(2004)
Chem. Biol.
, vol.11
, pp. 295-299
-
-
Humphrey, E.L.1
Shamji, A.F.2
Bernstein, B.E.3
Schreiber, S.L.4
-
32
-
-
11144272078
-
Characteristic low density and shear sensitivity of cross-linked chromatin containing polycomb complexes
-
Schwartz YB, Kahn TG, Pirrotta V: Characteristic low density and shear sensitivity of cross-linked chromatin containing polycomb complexes. Mol Cell Biol 2005, 25:432-439.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 432-439
-
-
Schwartz, Y.B.1
Kahn, T.G.2
Pirrotta, V.3
-
33
-
-
0035093828
-
Chromatin profiling using targeted DNA adenine methyltransferase
-
van Steensel B, Delrow J, Henikoff S: Chromatin profiling using targeted DNA adenine methyltransferase. Nat Genet 2001, 27:304-308.
-
(2001)
Nat. Genet.
, vol.27
, pp. 304-308
-
-
van Steensel, B.1
Delrow, J.2
Henikoff, S.3
-
34
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, et al.: Role of transposable elements in heterochromatin and epigenetic control. Nature 2004, 430:471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
-
35
-
-
1942453302
-
Predicting gene expression from sequence
-
Beer MA, Tavazoie S: Predicting gene expression from sequence. Cell 2004, 117:185-198.
-
(2004)
Cell
, vol.117
, pp. 185-198
-
-
Beer, M.A.1
Tavazoie, S.2
|