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Volumn 25, Issue 1, 2005, Pages 432-439

Characteristic low density and shear sensitivity of cross-linked chromatin containing polycomb complexes

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CHROMATIN; CONTROLLED STUDY; CROSS LINKING; DENSITY; DENSITY GRADIENT CENTRIFUGATION; GENE EXPRESSION; IMMUNOPRECIPITATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; RAT; ULTRASOUND;

EID: 11144272078     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.25.1.432-439.2005     Document Type: Article
Times cited : (32)

References (30)
  • 2
    • 0035833726 scopus 로고    scopus 로고
    • General transcription factors bind promoters repressed by Polycomb group proteins
    • Breiling, A., B. M. Turner, M. E. Bianchi, and V. Orlando. 2001. General transcription factors bind promoters repressed by Polycomb group proteins. Nature 412:651-655.
    • (2001) Nature , vol.412 , pp. 651-655
    • Breiling, A.1    Turner, B.M.2    Bianchi, M.E.3    Orlando, V.4
  • 3
    • 0014560637 scopus 로고
    • Properties of formaldehyde-treated nucleohistone
    • Brutlag, D., C. Schlehuber, and J. Bonner. 1969. Properties of formaldehyde-treated nucleohistone. Biochemistry 8:3214-3218.
    • (1969) Biochemistry , vol.8 , pp. 3214-3218
    • Brutlag, D.1    Schlehuber, C.2    Bonner, J.3
  • 4
    • 0001770214 scopus 로고    scopus 로고
    • Mapping DNA target sites of chromatin-associated proteins by formaldehyde cross-linking in Drosophila embryos
    • W. A. Bickmore (ed.), Oxford University Press, Oxford, United Kingdom
    • Cavalli, G., V. Orlando, and R. Paro. 1999. Mapping DNA target sites of chromatin-associated proteins by formaldehyde cross-linking in Drosophila embryos, p. 20-30. In W. A. Bickmore (ed.), Chromosome structural analysis: a practical approach. Oxford University Press, Oxford, United Kingdom.
    • (1999) Chromosome Structural Analysis: A Practical Approach , pp. 20-30
    • Cavalli, G.1    Orlando, V.2    Paro, R.3
  • 5
    • 0025771141 scopus 로고
    • Repair of UV-induced pyrimidine dimers in the individual genes Gart, Notch and white from Drosophila melanogaster cell lines
    • de Cock, J. G., E. C. Klink, W. Ferro, P. H. Lohman, and J. C. Eeken. 1991. Repair of UV-induced pyrimidine dimers in the individual genes Gart, Notch and white from Drosophila melanogaster cell lines. Nucleic Acids Res. 19:3289-3294.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3289-3294
    • De Cock, J.G.1    Klink, E.C.2    Ferro, W.3    Lohman, P.H.4    Eeken, J.C.5
  • 6
    • 0025860626 scopus 로고
    • A simplified formaldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions
    • Dedon, P. C., J. A. Soults, C. D. Allis, and M. A. Gorovsky. 1991. A simplified formaldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions. Anal. Biochem. 197:83-90.
    • (1991) Anal. Biochem. , vol.197 , pp. 83-90
    • Dedon, P.C.1    Soults, J.A.2    Allis, C.D.3    Gorovsky, M.A.4
  • 7
    • 0036005791 scopus 로고    scopus 로고
    • Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species
    • Dellino, G. I., C. Tatout, and V. Pirrotta. 2002. Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species. Int. J. Dev. Biol. 46:133-141.
    • (2002) Int. J. Dev. Biol. , vol.46 , pp. 133-141
    • Dellino, G.I.1    Tatout, C.2    Pirrotta, V.3
  • 8
    • 0033567325 scopus 로고    scopus 로고
    • The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction
    • Gaszner, M., J. Vazquez, and P. Schedl. 1999. The Zw5 protein, a component of the scs chromatin domain boundary, is able to block enhancer-promoter interaction. Genes Dev. 13:2098-2107.
    • (1999) Genes Dev. , vol.13 , pp. 2098-2107
    • Gaszner, M.1    Vazquez, J.2    Schedl, P.3
  • 9
    • 0033996526 scopus 로고    scopus 로고
    • Structure of a Polycomb response element and in vitro binding of polycomb group complexes containing GAGA factor
    • Horard, B., C. Tatout, S. Poux, and V. Pirrotta. 2000. Structure of a Polycomb response element and in vitro binding of polycomb group complexes containing GAGA factor. Mol. Cell. Biol. 20:3187-3197.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 3187-3197
    • Horard, B.1    Tatout, C.2    Poux, S.3    Pirrotta, V.4
  • 10
    • 0014498561 scopus 로고
    • Heterogeneity of deoxynucleoprotein particles as evidenced by ultracentrifugation of cesium chloride density gradient
    • Ilyin, Y. V., and G. P. Georgiev. 1969. Heterogeneity of deoxynucleoprotein particles as evidenced by ultracentrifugation of cesium chloride density gradient. J. Mol. Biol. 41:299-303.
    • (1969) J. Mol. Biol. , vol.41 , pp. 299-303
    • Ilyin, Y.V.1    Georgiev, G.P.2
  • 11
    • 0023785164 scopus 로고
    • The separation of transcriptionally engaged genes
    • Ip, Y. T., V. Jackson, J. Meier, and R. Challdey. 1988. The separation of transcriptionally engaged genes. J. Biol. Chem. 263:14044-14052.
    • (1988) J. Biol. Chem. , vol.263 , pp. 14044-14052
    • Ip, Y.T.1    Jackson, V.2    Meier, J.3    Challdey, R.4
  • 12
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • Kornberg, R. D., and Y. Lorch. 1999. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98:285-294.
    • (1999) Cell , vol.98 , pp. 285-294
    • Kornberg, R.D.1    Lorch, Y.2
  • 13
    • 0033388858 scopus 로고    scopus 로고
    • In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment
    • Kuo, M. H., and C. D. Allis. 1999. In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment. Methods 19:425-433.
    • (1999) Methods , vol.19 , pp. 425-433
    • Kuo, M.H.1    Allis, C.D.2
  • 15
    • 0035146753 scopus 로고    scopus 로고
    • The iab-7 Polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity
    • Mishra, R. K., J. Mihaly, S. Barges, A. Spierer, F. Karch, K. Hagstrom, S. E. Schweinsberg, and P. Schedl. 2001. The iab-7 Polycomb response element maps to a nucleosome-free region of chromatin and requires both GAGA and pleiohomeotic for silencing activity. Mol. Cell. Biol. 21:1311-1318.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 1311-1318
    • Mishra, R.K.1    Mihaly, J.2    Barges, S.3    Spierer, A.4    Karch, F.5    Hagstrom, K.6    Schweinsberg, S.E.7    Schedl, P.8
  • 16
    • 0033999219 scopus 로고    scopus 로고
    • A Drosophila ESC-E(Z) protein complex is distinct from other Polycomb group complexes and contains covalently modified ESC
    • Ng, J., C. M. Hart, K. Morgan, and J. A. Simon. 2000. A Drosophila ESC-E(Z) protein complex is distinct from other Polycomb group complexes and contains covalently modified ESC. Mol. Cell. Biol. 20:3069-3078.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 3069-3078
    • Ng, J.1    Hart, C.M.2    Morgan, K.3    Simon, J.A.4
  • 17
    • 0034161329 scopus 로고    scopus 로고
    • Mapping chromosomal proteins in vivo by formaldehyde-crosslinked- chromatin immunoprecipitation
    • Orlando, V. 2000. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem. Sci. 25:99-104.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 99-104
    • Orlando, V.1
  • 18
    • 0031080378 scopus 로고    scopus 로고
    • Analysis of chromatin structure by in vivo formaldehyde cross-linking
    • Orlando, V., H. Strutt, and R. Paro. 1997. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 11:205-214.
    • (1997) Methods , vol.11 , pp. 205-214
    • Orlando, V.1    Strutt, H.2    Paro, R.3
  • 19
    • 0035148407 scopus 로고    scopus 로고
    • Recruitment of components of Polycomb Group chromatin complexes in Drosophila
    • Poux, S., D. McCabe, and V. Pirrotta. 2001. Recruitment of components of Polycomb Group chromatin complexes in Drosophila. Development 128:75-85.
    • (2001) Development , vol.128 , pp. 75-85
    • Poux, S.1    McCabe, D.2    Pirrotta, V.3
  • 20
    • 0025814815 scopus 로고
    • Discrete regions of the avian beta-globin gene cluster have tissue-specific hypersensitivity to cleavage by sonication in nuclei
    • Reneker, J. S., and T. W. Brotherton. 1991. Discrete regions of the avian beta-globin gene cluster have tissue-specific hypersensitivity to cleavage by sonication in nuclei. Nucleic Acids Res. 19:4739-4745.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4739-4745
    • Reneker, J.S.1    Brotherton, T.W.2
  • 21
    • 0025166038 scopus 로고
    • Postinitiation transcriptional control in Drosophila melanogaster
    • Rougvie, A. E., and J. T. Lis. 1990. Postinitiation transcriptional control in Drosophila melanogaster. Mol. Cell. Biol. 10:6041-6045.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 6041-6045
    • Rougvie, A.E.1    Lis, J.T.2
  • 24
    • 11144324685 scopus 로고
    • Selected data for molecular biology
    • H.A. Sober (ed.), CRC Press, Cleveland, Ohio
    • Sober, H. A. 1973. Selected data for molecular biology, p. J-296. In H.A. Sober (ed.), Handbook of biochemistry. CRC Press, Cleveland, Ohio.
    • (1973) Handbook of Biochemistry
    • Sober, H.A.1
  • 25
    • 0023948705 scopus 로고
    • Mapping protein-DNA interactions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene
    • Solomon, M. J., P. L. Larsen, and A. Varshavsky. 1988. Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene. Cell 53:937-947.
    • (1988) Cell , vol.53 , pp. 937-947
    • Solomon, M.J.1    Larsen, P.L.2    Varshavsky, A.3
  • 26
    • 0024042734 scopus 로고
    • Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter
    • Thomas, G. H., and S. C. Elgin. 1988. Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter. EMBO J. 7:2191-2201.
    • (1988) EMBO J. , vol.7 , pp. 2191-2201
    • Thomas, G.H.1    Elgin, S.C.2
  • 27
    • 0037404421 scopus 로고    scopus 로고
    • A 1-megadalton ESC/E(Z) complex from Drosophila that contains Polycomblike and RPD3
    • Tie, F., J. Prasad-Sinha, A. Birve, A. Rasmuson-Lestander, and P. J. Harte. 2003. A 1-megadalton ESC/E(Z) complex from Drosophila that contains Polycomblike and RPD3. Mol. Cell. Biol. 23:3352-3362.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 3352-3362
    • Tie, F.1    Prasad-Sinha, J.2    Birve, A.3    Rasmuson-Lestander, A.4    Harte, P.J.5
  • 28
    • 0022178109 scopus 로고
    • The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains
    • Udvardy, A., E. Maine, and P. Schedl. 1985. The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains. J. Mol. Biol. 185:341-358.
    • (1985) J. Mol. Biol. , vol.185 , pp. 341-358
    • Udvardy, A.1    Maine, E.2    Schedl, P.3
  • 30
    • 0029063587 scopus 로고
    • Visualization of chromosomal domains with boundary element-associated factor BEAF-32
    • Zhao, K., C. M. Hart, and U. K. Laemmli. 1995. Visualization of chromosomal domains with boundary element-associated factor BEAF-32. Cell 81:879-889.
    • (1995) Cell , vol.81 , pp. 879-889
    • Zhao, K.1    Hart, C.M.2    Laemmli, U.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.