The Haloferax volcanii FtsY homolog is critical for haloarchaeal growth but does not require the A domain

Journal of Bacteriology

Volumn 187, Issue 12, 2005, Pages 4015-4022

  Haddad, Alex ^a   Rose, R Wesley ^a,b   Pohlschröder, Mechthild ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b FOX CHASE CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOCKING PROTEIN; SIGNAL RECOGNITION PARTICLE;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; CELL FRACTIONATION; CELL MEMBRANE; CONTROLLED STUDY; FTSY GENE; GENE DELETION; HALOFERAX VOLCANII; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; SEQUENCE HOMOLOGY; WILD TYPE;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CELL MEMBRANE; HALOFERAX VOLCANII; MOLECULAR SEQUENCE DATA; PROTEIN BIOSYNTHESIS; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, CYTOPLASMIC AND NUCLEAR; SEQUENCE HOMOLOGY, AMINO ACID;

ARCHAEA; EUKARYOTA; HALOFERAX VOLCANII;

EID: 20444489989     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.187.12.4015-4022.2005     Document Type: Article

References (45)

1. Allers, T., H. P. Ngo, M. Mevarech, and R. G. Lloyd. 2004. Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes. Appl. Environ. Microbiol. 70:943-953.
2. Bitan-Banin, G., R. Ortenberg, and M. Mevarech. 2003. Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene. J. Bacteriol. 185:772-778.
3. Bonneau, R., N. S. Baliga, E. W. Deutsch, P. Shannon, and L. Hood. 2004. Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1. Genome Biol. 5:R52.
4. Charlebois, R. L., W. L. Lam, S. W. Cline, and W. F. Doolittle. 1987. Characterization of pHV2 from Halobacterium volcanii and its use in demonstrating transformation of a archaebacterium. Proc. Natl. Acad. Sci. USA 84:8530-8534.
5. Charlebois, R. L., L. C. Schalkwyk, J. D. Hofman, and W. F. Doolittle. 1991 Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2. J. Mol. Biol. 222:509-524.
6. de Leeuw, E., D. Poland, O. Mol, I. Sinning, C. M. ten Hagen-Jongman, B. Oudega, and J. Luirink. 1997. Membrane association of FtSY, the E. coli SRP receptor. FEBS Lett. 416:225-229.
7. de Leeuw, E., K. te Kaat, C. Moser, G. Menestrina, R. Demel, B. de Kruijff, B. Oudega, J. Luirink, and I. Sinning. 2000. Anionic phospholipids are involved in membrane association of FtsY and stimulate its GTPase activity. EMBO J. 19:531-541.
8. Doudna, J. A., and R. T. Batey. 2004. Structural insights into the signal recognition particle. Annu. Rev. Biochem. 73:539-557.
9. Egea, P. F., S. O. Shan, J. Napetschnig, D. F. Savage, P. Walter, and R. M. Stroud. 2004. Substrate twinning activates the signal recognition particle and its receptor. Nature 427:215-221.
10. Eichler, J. 2000. Archaeal protein translocation: crossing membranes in the third domain of life. Eur. J. Biochem. 267:3402-3412.
11. Eitan, A., and E. Bibi. 2004. The core Escherichia coli signal recognition particle receptor contains only the N and G domains of FtsY. J. Bacteriol. 186:2492-2494.
12. Focia, P. J., I. V. Shepotinovskaya, J. A. Seidler, and D. M. Freymann. 2004. Heterodimeric GTPase core of the SRP targeting complex. Science 303: 373-377.
13. Fulga, T. A., I. Sinning, B. Dobberstein, and M. R. Pool. 2001. SRβ coordinates signal sequence release from SRP with ribosome binding to the translocon. EMBO J. 20:2338-2347.
14. Futterer, O., A. Angelov, H. Liesegang, G. Gottschalk, C. Schleper, B. Schepers, C. Dock, G. Antranikian, and W. Liebl. 2004. Genome sequence of Picrophilus torridus and its implications for life around pH 0. Proc. Natl. Acad. Sci. USA 101:9091-9096.
15. Gill, D. R., and G. P. C. Salmond. 1990. The identification of the Escherichia coli ftsY gene product: an unusual protein. Mol. Microbiol. 4:575-583.
16. Gropp, R., F. Gropp, and M. C. Betlach. 1992. Association of the halobacterial 7S RNA to the polysome correlates with expression of the membrane protein bacterioopsin. Proc. Natl. Acad. Sci. USA 89:1204-1208.
17. Jolley, K. A., E. Rapaport, D. W. Hough, M. J. Danson, W. G. Woods, and M. L. Dyall-Smith. 1996. Dihydrolipoamide dehydrogenase from the halophilic archaeon Haloferax volcanii: homologous overexpression of the cloned gene. J. Bacteriol. 178:3044-3048.
18. Keeling, P. J., R. L. Charlebois, and W. F. Doolittle. 1994. Archaebacterial genomes: eubacterial form and eukaryotic content. Curr. Opin. Gene Dev. 4: 816-833.
19. Lichi, T., G. Ring, and J. Eichler. 2004. Membrane binding of SRP pathway components in the halophilic archaea Haloferax volcanii. Eur. J. Biochem. 271:1382-1390.
20. Luirink, J., C. M. ten Hagen-Jongman, C. C. van der Weijden, B. Oudega, S. High, B. Dobberstein, and R. Kusters. 1994. An alternative protein targeting pathway in Escherichia coli: studies on the role of FtsY. EMBO J. 13: 2289-2296.
21. Lund, P. A., A. T. Large, and G. Kapatai. 2003. The chaperonins: perspectives from the Archaea. Biochem. Soc. Trans. 31:681-685.
22. Mevarech, M., and R. Werczberger. 1985. Genetic transfer in Halobacterium volcanii. J. Bacteriol. 162:461-462.
23. Millman, J. S., and D. W. Andrews. 1999. A site-specific, membrane-dependent cleavage event defines the membrane binding domain of FtsY. J. Biol. Chem. 274:33227-33234.
24. Millman, J. S., H. Y. Qi, F. Vulcu, H. D. Bernstein, and D. W. Andrews. 2001. FtsY binds to the Escherichia coli inner membrane via interactions with phosphatidylethanolamine and membrane proteins. J. Biol. Chem. 276: 25982-25989.
25. Moll, R. G. 2003. Protein-protein, protein-RNA and protein-lipid interactions of signal-recognition particle components in the hyperthermoacidophilic archaeon Acidianus ambivalens. Biochem. J. 374:247-254.
26. Ogg, S. C., W. P. Barz, and P. Walter. 1998. A functional GTPase domain, but not its transmembrane domain, is required for function of the SRP receptor beta-subunit. J. Cell Biol. 142:341-354.
27. Patenge, N., and J. Soppa. 1999. Extensive proteolysis inhibits high-level production of eukaryal G protein-coupled receptors in the archaeon Haloferax volcanii. FEMS Microbiol. Lett. 171:27-35.
28. Pogliano, K. J., and J. Beckwith. 1993. The Cs sec mutants of Escherichia coli reflect the cold sensitivity of protein export itself. Genetics 133:763-773.
29. Pohlschröder, M., K. Dilks, N. J. Hand, and R. Wesley Rose. 2004. Translocation of proteins across archaeal cytoplasmic membranes. FEMS Microbiol. Rev. 28:3-24.
30. Pohlschröder, M., C. Murphy, and J. Beckwith. 1996. In vivo analyses of interactions between SecE and SecY, core components of the Escherichia coli protein translocation machinery. J. Biol. Chem. 271:19908-19914.
31. Pohlschröder, M., W. A. Prinz, E. Hartmann, and J. Beckwith. 1997. Protein translocation in the three domains of life: variations on a theme. Cell 91: 563-566.
32. Pool, M. R. 2003. Getting to the membrane: how is co-translational protein targeting to the endoplasmic reticulum regulated? Biochem. Soc. Trans. 31: 1232-1237.
33. Ring, G., and J. Eichler. 2004. In the Archaea Haloferax volcanii, membrane protein biogenesis and protein synthesis rates are affected by decreased ribosomal binding to the translocon. J. Biol. Chem. 279:53160-53166.
34. Robinson, N. P., I. Dionne, M. Lundgren, V. L. Marsh, R. Bernander, and S. D. Bell. 2004. Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus. Cell 116:25-38.
35. Rose, R. W., and M. Pohlschröder. 2002. In vivo analysis of an essential archaeal signal recognition particle in its native host. J. Bacteriol. 184: 3260-3267.
36. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, vol. 1. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
37. Schut, G. J., S. D. Brehm, S. Datta, and M. W. Adams. 2003. Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides. J. Bacteriol. 185:3935-3947.
38. Slesarev, A. I., K. V. Mezhevaya, K. S. Makarova, N. N. Polushin, O. V. Shcherbinina, V. V. Shakhova, G. I. Belova, L. Aravind, D. A. Natale, I. B. Rogozin, R. L. Tatusov, Y. I. Wolf, K. O. Stetter, A. G. Malykh, E. V. Koonin, and S. A. Kozyavkin. 2002. The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. Proc. Natl. Acad. Sci. USA 99:4644-4649.
39. Tian, H., and J. Beckwith. 2002. Genetic screen yields mutations in genes encoding all known components of the Escherichia coli signal recognition particle pathway. J. Bacteriol. 184:111-118.
40. Tian, H., D. Boyd, and J. Beckwith. 2000. A mutant hunt for defects in membrane protein assembly yields mutations affecting the bacterial signal recognition particle and Sec machinery. Proc. Natl. Acad. Sci. USA 97: 4730-4735.
41. Tozik, I., Q. Huang, C. Zwieb, and J. Eichler. 2002. Reconstitution of the signal recognition particle of the halophilic archaeon Haloferax volcanii. Nucleic Acids Res. 30:4166-4175.
42. Van den Berg, B., W. M. demons, Jr., I. Collinson, Y. Modis, E. Hartmann, S. C. Harrison, and T. A. Rapoport. 2004. X-ray structure of a protein-conducting channel. Nature 427:36-44.
43. Walter, P., and G. Blobel. 1980. Purification of a membrane-associated protein complex required for protein translocation across the endoplasmic reticulum. Proc. Natl. Acad. Sci. USA 77:7112-7116.
44. Wild, K., M. Halic, I. Sinning, and R. Beckmann. 2004. SRP meets the ribosome. Nat. Struct. Mol. Biol. 11:1049-1053.
45. Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Toward a natural system of organisms: proposal for the domains Archaca, Bacteria, and Eukarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.