Reconstitution of the signal recognition particle of the halophilic archaeon Haloferax volcanii

Nucleic Acids Research

Volumn 30, Issue 19, 2002, Pages 4166-4175

  Tozik, Irit ^a   Huang, Qiaojia ^b   Zwieb, Christian ^b   Eichler, Jerry ^a  

^a BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

^b UNIVERSITY OF TEXAS HEALTH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOPLASM PROTEIN; PROTEIN SUBUNIT; RIBONUCLEOPROTEIN; RNA; SIGNAL RECOGNITION PARTICLE; SODIUM CHLORIDE;

ADAPTATION; AMINO ACID SEQUENCE; ARCHAEBACTERIUM; CONTROLLED STUDY; CYTOSOL; HALOFERAX VOLCANII; HALOPHILIC BACTERIUM; IMMUNOLOCALIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PROTEIN TARGETING; REVIEW; RIBOSOME;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; HALOFERAX; HALOFERAX VOLCANII; HALOPHILIC ARCHAEON; PROKARYOTA;

EID: 0036799450     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf548     Document Type: Review

References (42)

1. Herskovits,A.A., Bochkareva,E.S. and Bibi,E. (2000) New prospects in studying the bacterial signal recognition particle pathway. Mol. Microbiol., 38, 927-939.
2. Eichler,J. and Moll,R. (2001) The signal recognition particle of archaea. Trends Microbiol., 9, 130-136.
3. Keenan,R.J., Freymann,D.M., StroudR.M. and Walter,P. (2001) The signal recognition particle. Annu. Rev. Biochem., 70, 755-775.
4. Lütcke,H. (1995) Signal recognition particle (SRP), a ubiquitous initiator of protein translocation. Eur. J. Biochem., 228, 531-550.
5. Walter,P. and Johnson,A.E. (1994) Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane. Annu. Rev. Cell Biol., 10, 87-119.
6. Siegel,V. and Walter,P. (1986) Removal of the Alu structural domain from signal recognition particle leaves its protein translocation activity intact. Nature, 320, 81-84.
7. Thomas,Y., Bui,N. and Strub,K. (1997) A truncation in the 14 kDa protein of the signal recognition particle leads to tertiary structure changes in the RNA and abolishes the elongation arrest activity of the particle. Nucleic Acids Res., 25, 1920-1929.
8. Mason,N., CiufoL.F. and Brown,N. (2000) Elongation arrest is a physiologically important function of signal recognition particle. EMBO J., 15, 4164-4174.
9. Gowda,K., Clemons,W.M., Zwieb,C. and Black,S.D. (1999) Expression, purification, and crystallography of the conserved methionine-rich domain of human signal recognition particle 54 kDa protein. Protein Sci., 8, 1144-1151.
10. Young,J.C., Ursini,J., Legate,K.R., Miller,J.D., Walter,P. and Andrews,D.W. (1995) An amino-terminal-domain containing hydrophobic and hydrophilic sequences binds the signal recognition, particle receptor α subunit to the β subunit on the endoplasmic reticulum membrane. J. Biol. Chem., 270, 15650-15657.
11. Nakamura,K., Yahagi,S., Yamazaki,T. and Yamane,K. (1999) Bacillus subtilis histone-like protein, HBsu, is an integral component of a SRP-like particle that can bind the Alu domain of small cytoplasmic RNA. J. Biol. Chem., 274, 13569-13576.
12. Seluanov,A. and Bibi,E. (1997) Fts Y, the prokaryotic signal recognition particle receptor homologue, is essential for biogenesis of membrane proteins. J. Biol. Chem., 272, 2053-2055.
13. Ulbrandt,N.D, Newitt,J.A. and Bernstein,H.D. (1977) The E. coli signal recogition particle is required for the insertion of a subset of inner membrane proteins. Cell, 88, 187-196.
14. MacFarlane,J. and Muller,M. (1995) The functional integration of a polytopic membrane protein of Escherichia coli is dependent on the bacterial signal-recognition particle. Eur. J. Biochem., 233, 766-771.
15. Zwieb,C. and Eichler,J. (2001) Getting on target: the archaeal signal recognition particle. Archaea, 1, 27-34.
16. Bhuiyan,S.H., Gowda, K., Hotokezaka,H. and Zwieb,C. (2000) Assembly of archaeal signal recognition particle from recombinant components Nucleic Acids Res., 15, 1365-1373.
17. Maeshima,H., Okuno,E., Aimi,T., Morinaga,T. and Itoh,P. (2000) An archael protein homologous to mammalian SRP54 and bacterial Ffh recognizes a highly conserved region of SRP RNA. FEBS Lett., 507, 336-340.
18. Hainzl,T., Huang,S. and Sauer-Eriksson,A.E. (2002) Structure of the SRP19 RNA complex and implications for signal recognition particle assembly. Nature, 417, 767-771.
19. Oubridge, C., Kuglstatter,A., Jovine,L. and Nagai,K. (2002) Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle. Mol. Cell, 9, 1251-1261.
20. Madern,D., Ebel,C. and Zaccai,G. (2000) Halophilic adaptation of enzymes. Extremophiles, 4, 91-98.
21. Madigan,M.T. and Oren,A. (1999) Thermophilic and halophilic extremophiles. Curr. Opin. Microbiol., 2, 265-269.
22. Mevarech,M. and Werczberger,R. (1985) Genetic transfer in Halobacterium volcanii. J. Bacteriol., 162, 461-462.
23. Zwieb,C. (1991) Interaction of protein SRP19 with signal recognition particle RNA lacking individual RNA helices. Nucleic Acids Res., 19, 2955-2960.
24. Rosenshine,I., Zusman,T., Werczberger,R. and Mevarech,M. (1987) Amplification of specific DNA sequences correlates with resistance of the archaebacterium Halobacterium volcanii to the dihydrofolate reductase inhibitors trimethoprim and methotrexate. Mol. Gen. Genet., 208, 518-522.
25. Larsen,N. and Zwieb,C. (1991) SRP-RNA sequence alignment and secondary structure. Nucleic Acids Res., 19, 209-215.
26. Gorodkin,J., Knudsen,B., Zwieb,C. and Samuelsson,T. (2001) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res., 29, 169-170.
27. Althoff,S., Selinger,D. and Wise,J.A. (1994) Molecular evolution of SRP cycle components: functional implications. Nucleic Acids Res., 22, 1933-1947.
28. Weichenrieder,O., Wild,K., Strub,K. and Cusack,S. (2000) Structure and assembly of the Alu domain of the mammalian signal recognition particle. Nature, 408, 167-173.
29. Rose,W. and Pohlschroder,M. (2002) In vivo analysis of an essential archaeal signal recognition particle in its native host. J. Bacteriol., 184, 3260-3267.
30. Bernstein,H.D., Poritz,M.A., Strub,K., Hoben,P.J., Brenner,S. and Walter,P. (1989) Model for signal sequence recognition from amino-acid sequence of 54K subunit of signal recognition particle. Nature, 340, 482-486.
31. Römisch,K., Webb,J., Herz,J., Prehn,S., Frank,R., Vingron,M. and Dobberstein,B. (1989) Homology of 54K protein of signal-recognition particle, docking protein and two E. coli proteins with putative GTP-binding domains. Nature, 340, 478-482.
32. Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla, H.D., Lasky,S.R., Baliga,N.S., Thorsson,V., Sbrogna,J. et al. (2000) Genome sequence of Halobacterium species NRC-1. Proc. Natl Acad. Sci. USA, 97, 12176-12181.
33. Batey,R.T., Rambo,R.P., Lucast,L., Rha,B., and Doudna,J.A. (2000) Crystal structure of the ribonucleoprotein core of the signal recognition particle. Science, 287, 1232-1239.
34. Christian,J.H.B. and Waltho,J.A. (1962) Solute concentrations within cells of halophilic and non-halophilic bacteria. Biochim. Biophys. Acta, 65, 506-508.
35. Diener,J.L. and Wilson,C. (2000) Role of SRP19 in assembly of the Archaeologlobus fulgidus signal recognition particle. Biochemistry, 39, 12862-12874.
36. Pakhomova,O.N., Deep,S., Huang,Q., Zwieb,C. and Hinck,A.P. (2002) Solution structure of protein SRP19 of Archaeoglobus fulgidus signal recognition particle. J. Mol. Biol., 317 145-158.
37. Wild,K., Sinning,L. and Cusack,S. (2001) Crystal structure of an early protein-RNA assembly complex of the signal recognition particle Science, 294, 598-601.
38. Ruepp,A., Graml,W., Santos-Martinez,M.L., Koretke,K.K., Volker,C., Mewes,H.W. Frishman,D., Stocker,S., Lupas,A.N. and Baumeister,W. (2000) The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum, Nature, 407, 508-513.
39. Ban,N., Nissen,P., Hansen,J., Moore,P.B., and Steiz,T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science, 289, 905-920.
40. Sanchez,M.E., Urena,D., Amils,R. and Londei P. (1990) In vitro reassembly of active large ribosomal subunits of the halophilic archaebacterium Haloferazx mediterranei. Biochemistry, 29, 9256-9261.
41. Schemeing,T.M. Seila,A.C., Hansen,J.L., Freeborn,B., Soukup,J.K., Scaringe,S.A., Strobel,S.A. Moore,P.B., and Steitz,T.A. (2002) A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits. Nature Struct. Biol., 9, 225-230.
42. Ring,G. and Eichler,J. (2001) Large-scale preparation and characterization of inverted membrane vesicles from the halophilic archaeon Haloferax volcanii. J Membr. Biol., 183, 195-204.