Fixed character states and the optimization of molecular sequence data

Cladistics

Volumn 15, Issue 4, 1999, Pages 379-385

  Wheeler, Ward ^a  

^a DIVISION OF INVERTEBRATE ZOOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLADISTICS;

EID: 0033505348     PISSN: 07483007     EISSN: None     Source Type: Journal    
DOI: 10.1006/clad.1999.0115     Document Type: Article

References (11)

1. Gladstein D. S., Wheeler W. C. POY: The Optimization of Alignment Characters. 1997;Program and Documentation, New York.
2. Goloboff P. A. Character optimization and calculation of tree lengths. Cladistics. 9:1994;433-436.
3. Goloboff P. A. Tree searches under Sankoff parsimony. Cladistics. 14:1998;229-238.
4. Needleman S. B., Wunsch C. D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:1970;443-453.
5. Nixon K. N., Davis J. I. Polymorphic taxa, missing values, and cladistic analysis. Cladistics. 7:1991;233-241.
6. Platnick N., Griswold C. E., Coddington J. A. On missing entries in cladistic analysis. Cladistics. 7:1991;337-343.
7. Sankoff D. D., Rousseau P. Locating the vertices of a Steiner tree in arbitrary space. Math. Prog. 9:1975;240-246.
8. Wheeler Q. D. Ontogeny and character phylogeny. Cladistics. 6:1990;225-268.
9. Wheeler W. C. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 44:1995;321-332.
10. Wheeler W. C. Optimization alignment: The end of multiple sequence alignment in phylogenetics? Cladistics. 12:1996;1-9.
11. Wheeler W. C., Hayashi C. Y. The phylogeny of the chelicerate orders. Cladistics. 24:1998;1-20.