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Volumn 49, Issue 1, 2000, Pages 87-100

Phylogenetic relationship among horseshoe crab species: Effect of substitution models on phylogenetic analyses

Author keywords

Carcinoscorpius rotundicauda; Limulus polyphemus; Molecular phylogenetics; RELL; Substitution model; T. tridentatus; Tachypleus gigas

Indexed keywords

CARCINOSCORPIUS ROTUNDICAUDA; DECAPODA (CRUSTACEA); LIMULUS; LIMULUS POLYPHEMUS; MEROSTOMATA; POLYPHEMUS; TACHYPLEUS GIGAS; TACHYPLEUS TRIDENTATUS;

EID: 0034350366     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150050207401     Document Type: Article
Times cited : (50)

References (68)
  • 1
    • 0028220048 scopus 로고
    • Synonymous codon usage in drosophila melanogaster: Natural selection and translational accuracy
    • AKASHI, H. 1994. Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy. Genetics 136:927-935.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 2
    • 0028572851 scopus 로고
    • A speciational history of 'living fossils': Molecular evolutionary patterns in horseshoe crabs
    • AVISE, J. C., W. S. NELSON, AND H. SUGITA. 1994. A speciational history of 'living fossils': Molecular evolutionary patterns in horseshoe crabs. Evolution 48:1986-2001.
    • (1994) Evolution , vol.48 , pp. 1986-2001
    • Avise, J.C.1    Nelson, W.S.2    Sugita, H.3
  • 3
    • 0020024572 scopus 로고
    • Codon selection in yeast
    • BENNETZEN, J. L., AND B. D. HALL. 1982. Codon selection in yeast. J. Biol. Chem. 257:3026-3031.
    • (1982) J. Biol. Chem. , vol.257 , pp. 3026-3031
    • Bennetzen, J.L.1    Hall, B.D.2
  • 4
    • 0031586223 scopus 로고    scopus 로고
    • Growth rate-optimized tRNA abundance and codon usage
    • BERG, O. G., AND C. G. KURLAND. 1997. Growth rate-optimized tRNA abundance and codon usage. J. Mol. Biol. 270:544-550.
    • (1997) J. Mol. Biol. , vol.270 , pp. 544-550
    • Berg, O.G.1    Kurland, C.G.2
  • 5
    • 0029082357 scopus 로고
    • Synonymous substitution-rate constants in escherichia coli and salmonella typhimurium and their relationship to gene expression and selection pressure
    • BERG, O. G., AND M. MARTELIUS. 1995. Synonymous substitution-rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure. J. Mol. Evol. 41: 449-456.
    • (1995) J. Mol. Evol. , vol.41 , pp. 449-456
    • Berg, O.G.1    Martelius, M.2
  • 6
    • 0031796295 scopus 로고    scopus 로고
    • Mitochondrial gene order is not conserved in arthropods: Prostriate and metastriate tick mitochondrial genomes
    • BLACK, W. C. I., AND R. L. ROEHRDANZ. 1998. Mitochondrial gene order is not conserved in arthropods: Prostriate and metastriate tick mitochondrial genomes. Mol. Biol. Evol. 15:1772-1785.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1772-1785
    • Black, W.C.I.1    Roehrdanz, R.L.2
  • 8
    • 0014940323 scopus 로고
    • Selective constraints on amino-acid substitutions during the evolution of proteins
    • CLARKE, B. 1970. Selective constraints on amino-acid substitutions during the evolution of proteins. Nature 228:159-160.
    • (1970) Nature , vol.228 , pp. 159-160
    • Clarke, B.1
  • 9
    • 0014214038 scopus 로고
    • Non-randomness of amino-acid changes in the evolution of homologous proteins
    • EPSTEIN, C. J. 1967. Non-randomness of amino-acid changes in the evolution of homologous proteins. Nature 215:355-359.
    • (1967) Nature , vol.215 , pp. 355-359
    • Epstein, C.J.1
  • 10
    • 0026682501 scopus 로고
    • Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregating sites as compared to phylogenetic estimates
    • FELSENSTEIN, J. 1992. Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genet. Res. 59:139-147.
    • (1992) Genet. Res. , vol.59 , pp. 139-147
    • Felsenstein, J.1
  • 12
    • 0001905127 scopus 로고
    • The Xiphosurida: Archetypes of bradytely?
    • (N. Eldredge, and S. M. Stanley, eds.). Springer, New York
    • FISHER, D. C. 1984. The Xiphosurida: Archetypes of bradytely? Pages 196-213 in Living fossils. (N. Eldredge, and S. M. Stanley, eds.). Springer, New York.
    • (1984) Living Fossils , pp. 196-213
    • Fisher, D.C.1
  • 13
    • 0028887457 scopus 로고
    • Success of maximum likelihood phylogeny inference in the four-taxon case
    • GAUT, B. S., AND P. O. LEWIS. 1995. Success of maximum likelihood phylogeny inference in the four-taxon case. Mol. Biol. Evol. 12:152-162.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 152-162
    • Gaut, B.S.1    Lewis, P.O.2
  • 14
    • 0020317308 scopus 로고
    • Patterns of nucleotide substitution in pseudogenes and functional genes
    • GOJOBORI, T., W. H. LI, AND D. GRAUR. 1982. Patterns of nucleotide substitution in pseudogenes and functional genes. J. Mol. Evol. 18:360-369.
    • (1982) J. Mol. Evol. , vol.18 , pp. 360-369
    • Gojobori, T.1    Li, W.H.2    Graur, D.3
  • 15
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • GOLDMAN, N., AND Z. YANG. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:725-736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 16
    • 0020491327 scopus 로고
    • Codon usage in bacteria: Correlation with gene expressivity
    • GOUY, M., AND C. GAUTIER. 1982. Codon usage in bacteria: Correlation with gene expressivity. Nucleic Acids Res. 10: 7055-7064.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 7055-7064
    • Gouy, M.1    Gautier, C.2
  • 17
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • GRANTHAM, R. 1974. Amino acid difference formula to help explain protein evolution. Science 185:862-864.
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 18
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA, M., H. KISHINO, AND T. A. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.A.3
  • 19
    • 11944268967 scopus 로고
    • The performance of phylogenetic methods in simulation
    • HUELSENBECK, J. P. 1995. The performance of phylogenetic methods in simulation. Syst. Biol. 44:17-48.
    • (1995) Syst. Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 20
    • 84995469111 scopus 로고
    • Correlation between codon usage and tRNA content in microorganisms
    • (D. L. Hatfield, B. Lee, and J. Pirtle, eds.). CRC Press, Boca Raton, Florida
    • IKEMURA, T. 1992. Correlation between codon usage and tRNA content in microorganisms. Pages 87-111 in Transfer RNA in protein synthesis (D. L. Hatfield, B. Lee, and J. Pirtle, eds.). CRC Press, Boca Raton, Florida.
    • (1992) Transfer RNA in Protein Synthesis , pp. 87-111
    • Ikemura, T.1
  • 21
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene of mammals
    • IRWIN, D. M., T. D. KOCHER, AND A. C. WILSON. 1991. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32:128-144.
    • (1991) J. Mol. Evol. , vol.32 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 22
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • JONES, D. T., W. R. TAYLOR, AND J. M. THORNTON. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8: 275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 23
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H. N. Munro, ed.). Academic Press, New York
    • JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. Pages 21-123 in Mammalian protein metabolism (H. N. Munro, ed.). Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 24
    • 0030293969 scopus 로고    scopus 로고
    • Phylogenetic relationship among termite families based on DNA sequence of mitochondrial 16s ribosomal RNA gene
    • KAMBHAMPATI, S., K. M. KJER, AND B. L. THORNE. 1996. Phylogenetic relationship among termite families based on DNA sequence of mitochondrial 16S ribosomal RNA gene. Insect Mol. Biol. 5:229-238.
    • (1996) Insect Mol. Biol. , vol.5 , pp. 229-238
    • Kambhampati, S.1    Kjer, K.M.2    Thorne, B.L.3
  • 26
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • KISHINO, H., AND M. HASEGAWA. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 27
    • 0025181359 scopus 로고
    • Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
    • KISHINO, H., T. MIYATA, AND M. HASEGAWA. 1990. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 31:151-160.
    • (1990) J. Mol. Evol. , vol.31 , pp. 151-160
    • Kishino, H.1    Miyata, T.2    Hasegawa, M.3
  • 28
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • KUHNER, M. K., AND J. FELSENSTEIN. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-468.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 30
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer, Sunderland, Massachusetts
    • LI, W.-H. 1997. Molecular evolution. Sinauer, Sunderland, Massachusetts.
    • (1997) Molecular Evolution
    • Li, W.-H.1
  • 31
    • 0029935637 scopus 로고    scopus 로고
    • Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
    • LOCKHART, P. J., A. W. LARKUM, M. STEEL, P. J. WADDELL, AND D. PENNY. 1996. Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis. Proc. Natl. Acad. Sci. USA 93:1930-1934.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1930-1934
    • Lockhart, P.J.1    Larkum, A.W.2    Steel, M.3    Waddell, P.J.4    Penny, D.5
  • 32
    • 0018415510 scopus 로고
    • Two types of amino acid substitution in protein evolution
    • MIYATA, T., S. MIYAZAWA, AND T. YASUNAGA. 1979. Two types of amino acid substitution in protein evolution. J. Mol. Evol. 12:219-236.
    • (1979) J. Mol. Evol. , vol.12 , pp. 219-236
    • Miyata, T.1    Miyazawa, S.2    Yasunaga, T.3
  • 33
    • 0001089636 scopus 로고
    • Application of an improved method of two-dimensional electrophoresis to the systematic study of horseshoe crabs
    • MIYAZAKI, J., K. SEKIGUCHI, AND T. HIRABAYASHI. 1987. Application of an improved method of two-dimensional electrophoresis to the systematic study of horseshoe crabs. Biol. Bull. 172:212-224.
    • (1987) Biol. Bull. , vol.172 , pp. 212-224
    • Miyazaki, J.1    Sekiguchi, K.2    Hirabayashi, T.3
  • 34
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
    • MUSE, S. V, AND B. S. GAUT. 1994. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol. Biol. Evol. 11:715-724.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 715-724
    • Muse S. V1    Gaut, B.S.2
  • 35
    • 0003841510 scopus 로고    scopus 로고
    • Inferring population history from molecular phylogenies
    • (P. H. Harvey, A. J. L. Brown, J. Maynard Smith, and S. Nee, eds.). Oxford Univ. Press, Oxford
    • NEE, S., E. C. HOLMES, A. RAMBAUT, AND P. H. HARVEY. 1996. Inferring population history from molecular phylogenies. Pages 66-80 in New uses for new phylogenies (P. H. Harvey, A. J. L. Brown, J. Maynard Smith, and S. Nee, eds.). Oxford Univ. Press, Oxford.
    • (1996) New Uses for New Phylogenies , pp. 66-80
    • Nee, S.1    Holmes, E.C.2    Rambaut, A.3    Harvey, P.H.4
  • 36
    • 0024280840 scopus 로고
    • Isolation of cDNA clones coding for mitochondrial 16S ribosomal RNA from the crustacean Artemia
    • PALMERO, I., J. RENART, AND L. SASTRE. 1988. Isolation of cDNA clones coding for mitochondrial 16S ribosomal RNA from the crustacean Artemia. Gene 68:239-248.
    • (1988) Gene , vol.68 , pp. 239-248
    • Palmero, I.1    Renart, J.2    Sastre, L.3
  • 37
    • 0022472311 scopus 로고
    • Estimating the reliability of evolutionary trees
    • PENNY, D., AND M. HENDY. 1986. Estimating the reliability of evolutionary trees. Mol. Biol. Evol. 3:403-417.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 403-417
    • Penny, D.1    Hendy, M.2
  • 38
    • 0007494992 scopus 로고
    • Systematics and hybridization in the four living species of horseshoe crabs
    • SEKIGUCHI, K., AND H. SUGITA. 1980. Systematics and hybridization in the four living species of horseshoe crabs. Evolution 34:712-718.
    • (1980) Evolution , vol.34 , pp. 712-718
    • Sekiguchi, K.1    Sugita, H.2
  • 39
    • 0023762645 scopus 로고
    • Codon usage patterns in Escherichia coli, Bacillus subtilis, Succharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens: A review of the considerable within-species diversity
    • SHARP, P. M., E. COWE, D. G. HIGGINS, D. C. SHIELDS, K. H. WOLFE, AND F. WRITE. 1988. Codon usage patterns in Escherichia coli, Bacillus subtilis, Succharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens: a review of the considerable within-species diversity. Nucleic Acids Res. 16:8207-8211.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 8207-8211
    • Sharp, P.M.1    Cowe, E.2    Higgins, D.G.3    Shields, D.C.4    Wolfe, K.H.5    Write, F.6
  • 40
    • 0024967181 scopus 로고
    • Codon usage and gene expression level in Dictyostelium discoideum: Highly expressed genes do "prefer" optimal codons
    • SHARP, P. M., AND K. M. DEVINE. 1989. Codon usage and gene expression level in Dictyostelium discoideum: Highly expressed genes do "prefer" optimal codons. Nucleic Acids Res. 17:5029-5038.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 5029-5038
    • Sharp, P.M.1    Devine, K.M.2
  • 41
    • 0039990953 scopus 로고
    • Horseshoe crab phylogeny based on amino acid sequences of the fibrino-peptide-like peptide c
    • SHISHIKURA, F., S. NAKAMURA, K. TAKAHASHI, AND K. SEKIGUCHI. 1982. Horseshoe crab phylogeny based on amino acid sequences of the fibrino-peptide-like peptide C. J. Ex. Zool. 223:89-91.
    • (1982) J. Ex. Zool. , vol.223 , pp. 89-91
    • Shishikura, F.1    Nakamura, S.2    Takahashi, K.3    Sekiguchi, K.4
  • 42
    • 0009319156 scopus 로고
    • Serological correspondence among horseshoe "crabs" (Limulidae)
    • SHUSTER, C. N., JR. 1962. Serological correspondence among horseshoe "crabs" (Limulidae). Zoologica 47:1-8.
    • (1962) Zoologica , vol.47 , pp. 1-8
    • Shuster C.N., Jr.1
  • 43
    • 0013965569 scopus 로고
    • Relations between chemical structure and biological activity
    • SNEATH, P. H. A. 1966. Relations between chemical structure and biological activity. J. Theor. Biol. 12:157-195.
    • (1966) J. Theor. Biol. , vol.12 , pp. 157-195
    • Sneath, P.H.A.1
  • 44
    • 0024405193 scopus 로고
    • Codon usage determines translation rate in Escherichia coli
    • SORENSEN, M. A., C. G. KURLAND, AND S. PEDERSEN. 1989. Codon usage determines translation rate in Escherichia coli. J. Mol. Biol. 207:365-377.
    • (1989) J. Mol. Biol. , vol.207 , pp. 365-377
    • Sorensen, M.A.1    Kurland, C.G.2    Pedersen, S.3
  • 45
    • 0022110127 scopus 로고
    • The complete amino acid sequence of coagulogen isolated from southeast Asian horseshoe crab, Carcinoscorpius rotundicauda
    • SRIMAL, S., T. MIYATA, S. KAWABATA, T. MIYATA, AND S. IWANAGA. 1985. The complete amino acid sequence of coagulogen isolated from southeast Asian horseshoe crab, Carcinoscorpius rotundicauda. J. Biochem. 98:305-318.
    • (1985) J. Biochem. , vol.98 , pp. 305-318
    • Srimal, S.1    Miyata, T.2    Kawabata, S.3    Miyata, T.4    Iwanaga, S.5
  • 46
    • 0039702575 scopus 로고
    • Immunological comparisons of hemocyanins and their phylogenetic implications
    • (K. Sekiguchi, ed.). Science House, Tokyo
    • SUGITA, H. 1988. Immunological comparisons of hemocyanins and their phylogenetic implications. Pages 315-334 in Biology of horseshoe crabs (K. Sekiguchi, ed.). Science House, Tokyo.
    • (1988) Biology of Horseshoe Crabs , pp. 315-334
    • Sugita, H.1
  • 47
    • 0029385224 scopus 로고
    • A case of orthologous sequences of hemocyanin subunits for an evolutionary study of horseshoe crabs: Amino acid sequence comparison of immunologically identical subunits of Carcinoscorpius rotundicauda and Tachypleus tridentatus
    • SUGITA, H., AND F. SHISHIKURA. 1995. A case of orthologous sequences of hemocyanin subunits for an evolutionary study of horseshoe crabs: Amino acid sequence comparison of immunologically identical subunits of Carcinoscorpius rotundicauda and Tachypleus tridentatus. Zool. Sci. Tokyo 12:661-667.
    • (1995) Zool. Sci. Tokyo , vol.12 , pp. 661-667
    • Sugita, H.1    Shishikura, F.2
  • 48
    • 0028200719 scopus 로고
    • Inconsistency of the maximum parsimony method when the rate of nucleotide substitution is constant
    • TAKEZAKI, N., AND M. NEI. 1994. Inconsistency of the maximum parsimony method when the rate of nucleotide substitution is constant. J. Mol. Evol. 39:210-218.
    • (1994) J. Mol. Evol. , vol.39 , pp. 210-218
    • Takezaki, N.1    Nei, M.2
  • 49
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • TAMURA, K., AND M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 50
    • 0028205953 scopus 로고
    • Relative efficiencies of the maximum-likelihood, neighborjoining, and maximum-parsimony methods when substitution rate varied with site
    • TATENO, Y., N. TAKEZAKI, AND M. NEI. 1994. Relative efficiencies of the maximum-likelihood, neighborjoining, and maximum-parsimony methods when substitution rate varied with site. Mol. Biol. Evol. 11:261-277.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 261-277
    • Tateno, Y.1    Takezaki, N.2    Nei, M.3
  • 51
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, AND T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 52
    • 0029970817 scopus 로고    scopus 로고
    • Maximizing transcription efficiency causes codon usage bias
    • XIA, X. 1996. Maximizing transcription efficiency causes codon usage bias. Genetics 144:1309-1320.
    • (1996) Genetics , vol.144 , pp. 1309-1320
    • Xia, X.1
  • 53
    • 0031916709 scopus 로고    scopus 로고
    • The rate heterogeneity of nonsynonymous substitutions in mammalian mitochondrial genes
    • XIA, X. 1998a. The rate heterogeneity of nonsynonymous substitutions in mammalian mitochondrial genes. Mol. Biol. Evol. 15:336-344.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 336-344
    • Xia, X.1
  • 54
    • 0031805147 scopus 로고    scopus 로고
    • How optimized is the translational machinery in E. coli, S. typhimurium, and S. cerevisiae?
    • XIA, X. 1998b. How optimized is the translational machinery in E. coli, S. typhimurium, and S. cerevisiae? Genetics 149:37-44.
    • (1998) Genetics , vol.149 , pp. 37-44
    • Xia, X.1
  • 55
    • 0029819269 scopus 로고    scopus 로고
    • On transition bias in mitochondrial genes of pocket gophers
    • XIA, X., M. S. HAFNER, AND P. D. SUDMAN. 1996 On transition bias in mitochondrial genes of pocket gophers. J. Mol. Evol. 43:32-40.
    • (1996) J. Mol. Evol. , vol.43 , pp. 32-40
    • Xia, X.1    Hafner, M.S.2    Sudman, P.D.3
  • 56
    • 0031766244 scopus 로고    scopus 로고
    • What amino acid properties affect protein evolution?
    • XIA, X., AND W.-H. LI. 1998. What amino acid properties affect protein evolution? J. Mol. Evol. 47:557-564.
    • (1998) J. Mol. Evol. , vol.47 , pp. 557-564
    • Xia, X.1    Li, W.-H.2
  • 57
    • 0027132974 scopus 로고
    • Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • YANG, Z. 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 58
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • YANG, Z. 1994a. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39:105-111.
    • (1994) J. Mol. Evol. , vol.39 , pp. 105-111
    • Yang, Z.1
  • 59
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • YANG, Z. 1994b. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods. J. Mol. Evol. 39: 306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 60
    • 0029067458 scopus 로고
    • Evaluation of several methods for estimating phylogenetic trees when substitution rates differ over nucleotide sites
    • YANG, Z. 1995. Evaluation of several methods for estimating phylogenetic trees when substitution rates differ over nucleotide sites. J. Mol. Evol. 40:689-697.
    • (1995) J. Mol. Evol. , vol.40 , pp. 689-697
    • Yang, Z.1
  • 61
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analysis
    • YANG, Z. 1996a. Among-site rate variation and its impact on phylogenetic analysis. Trends Ecol. Evol. 11:367-372.
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 367-372
    • Yang, Z.1
  • 62
    • 0029970097 scopus 로고    scopus 로고
    • Maximum-likelihood models for combined analyses of multiple sequence data
    • YANG, Z. 1996b. Maximum-likelihood models for combined analyses of multiple sequence data. J. Mol. Evol. 42:587-596.
    • (1996) J. Mol. Evol. , vol.42 , pp. 587-596
    • Yang, Z.1
  • 63
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG, Z. 1997a. PAML: A program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 64
    • 0030638573 scopus 로고    scopus 로고
    • How often do wrong models produce better phylogenies?
    • YANG, Z. 1997b. How often do wrong models produce better phylogenies? Mol. Biol. Evol. 14:105-108.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 105-108
    • Yang, Z.1
  • 65
    • 0029892459 scopus 로고    scopus 로고
    • Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites
    • YANG, Z., AND S. KUMAR. 1996. Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites. Mol. Biol. Evol. 13:650-659.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 650-659
    • Yang, Z.1    Kumar, S.2
  • 66
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • YANG, Z., S. KUMAR, AND M. NEI. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 67
    • 0031792828 scopus 로고    scopus 로고
    • Models of amino acid substitution and applications to mitochondrial protein evolution
    • YANG, Z., R. NIELSEN, AND M. HASEGAWA. 1998. Models of amino acid substitution and applications to mitochondrial protein evolution. Mol. Biol. Evol. 15:1600-1611.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1600-1611
    • Yang, Z.1    Nielsen, R.2    Hasegawa, M.3
  • 68
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • (V. Bryson, and H. J. Vogel, eds.). Academic Press, New York
    • ZUCKERKANDL, E., AND L. PAULING. 1965. Evolutionary divergence and convergence in proteins. Pages 97-166 in Evolving genes and proteins (V. Bryson, and H. J. Vogel, eds.). Academic Press, New York.
    • (1965) Evolving Genes and Proteins , pp. 97-166
    • Pauling, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.