Comparison of the nucleotide sequence and secondary structure of the 5.8S ribosomal RNA gene of Chlamydomonas tetragama with those of green algae

Mitochondrial DNA

Volumn 8, Issue 6, 1998, Pages 403-408

  Uchida, Hidenobu ^a   Kitae, Kaori ^a   Tomizawa, Ken Ich ^a   Yokota, Akiho ^a  

^a RESEARCH INSTITUTE OF INNOVATIVE TECHNOLOGY FOR THE EARTH   (Japan)

Author keywords

5.8S ribosomal RNA gene; Chlamydomonas

Indexed keywords

GENE STRUCTURE; NUCLEOTIDE SEQUENCE; PLANT GENETICS; POLYMERASE CHAIN REACTION; RIBOSOME; RNA;

ALGAE; ANIMALS; CHLAMYDOMONAS; CLONING, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, RIBOSOMAL, 5.8S; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ALGAE; CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; CHLAMYDOMONAS TETRAGAMA; CHLOROPHYTA; EUKARYOTA;

EID: 0032415046     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/10425179809020902     Document Type: Article

References (15)

1. Bhattacharya, D., Friedl, T. and Damberger, S. (1996) "Nuclear-encoded rDNA group I introns: Origin and phy-logenetic relationships of insertion site lineages in the green algae," Mol. Biol. Evol., 13, 978-989. (Pubitemid 26284914)
2. Buchheim, M. A., Lemieux, C, Otis, C, Gutell, R. R., Chapman, R. L. and Turmel, M. (1996) "Phylogeny of the Chlamydomonadales (Chlorophyceae): A comparison of ribosomal RNA gene sequences from the nucleus and the chloroplast," Mol. Phylogen. Evol., 5, 391-402. (Pubitemid 126321179)
3. Coleman, A. W., Suarez, A. and Goff, L. ]. (1994) "Molecular delineation of species and syngens in Volvocacean green algae (Chlorophyta)," J. Phycology, 30, 80-90. (Pubitemid 2067915)
4. Dujon, B. (1989) "Group I introns as mobile genetic elements: facts and mechanistic speculations-a review," Gene, 82, 91-114. (Pubitemid 19248662)
5. Elela, S. A. and Nazar, R. N. (1992) "Extended secondary structure as a basis of increased RNA stability in a thermophilic alga Cyimidium caldarium," Biochim. Biophys. Acta, 130,339-342.
6. Ettl, H. (1976) "Die Gattung Chlamydomonas Ehrenberg," Nova Hedwigia, Beih., 49,1-1122.
7. Friedl, T. (1996) "Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from nuclearencoded ribosomal DNA sequences and motile cell ultra-structure," Phiycologia, 35, 456-69. (Pubitemid 126586731)
8. Melkonian, M. (1990) Chlorophyte orders of uncertain affinities: order Microthamniales. In: Margulis, L., Corliss, J. O., Melkonian, M. and Chapman, D. J. (eds.). Handbook of Protoctista. (Jones and Bartlett, Boston), pp. 652-654.
9. Nakayama, T., Watanabe, S., Mitsui, K., Uchida, H. and Inouye, I. (1996) "The phylogenetic relationship between the Chlamydomonadales and Chlorococcales inferred from 18S rDN A sequence data," Phycol. Res., 44,47-55.
10. Nozaki, H., Aizawa, K. and Watanabe, M. M. (1996) "Reexamination of two NIES strains labeled Chlorogoniuin metamorphum (Volvocales, Chlorophyta) from Japan," Nova Hedwigia, Beih., 112, 483-490.
11. Sensen, C. W. (1993) "Untersuchungen zur molekularen Phylogenie von Spermatozopsis similis Preisig et Melkonian, 1984 (Chlorophyceae). Ph.D. Thesis, Koeln.
12. Thompson, A. J. and Herrin, D. L. (1994) "A chloroplast group I intron undergoes the first step of reverse splicing into host cytoplasmic 5.8S rRNA," J. Mol. Biol., 236, 455-468.
13. van den Hoek, C, Mann, D. G. and Jahns, H. M. (1995) Algae. (Cambridge Univ. Press, Cambridge).
14. Walter, B. and Melkonian, M. (1993) "Gene for the nuclear-encoded 5.8S rRNA," Plant Mol. Biol, 23, 227-227.
15. White, T. J., Bruns, T., Lee, S. and Taylor, J. (1990) Amplification and direct sequencing of eukaryotic ribosomal RNA genes for phylogenetic analyses. In: Innis, M. A, Gelfand, D. H., Sninsky, J. J. and White, T. J. (eds.). PCR Protocols. (Academic Press).