메뉴 건너뛰기




Volumn 307, Issue 1, 2005, Pages 52-64

Telomere-surrounding regions are transcription-permissive 3D nuclear compartments in human cells

Author keywords

Active genes; Centromeres; Gene transcripts; Nuclear organization; Telomeres; Transcription

Indexed keywords

MESSENGER RNA;

EID: 19544366590     PISSN: 00144827     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.yexcr.2005.02.025     Document Type: Article
Times cited : (9)

References (56)
  • 1
    • 0035831038 scopus 로고    scopus 로고
    • Positions of potential: Nuclear organization and gene expression
    • S.M. Gasser Positions of potential: nuclear organization and gene expression Cell 104 2001 639 642
    • (2001) Cell , vol.104 , pp. 639-642
    • Gasser, S.M.1
  • 2
    • 0036574913 scopus 로고    scopus 로고
    • Unravelling heterochromatin: Competition between positive and negative factors regulates accessibility
    • N. Dillon, and R. Festenstein Unravelling heterochromatin: competition between positive and negative factors regulates accessibility Trends Genet. 18 2002 252 258
    • (2002) Trends Genet. , vol.18 , pp. 252-258
    • Dillon, N.1    Festenstein, R.2
  • 4
    • 0142058200 scopus 로고    scopus 로고
    • The spatial organization of centromeric heterochromatin during normal human lymphopoiesis: Evidence for ontogenically determined spatial patterns
    • I. Alcobia, A.S. Quina, H. Neves, N. Clode, and L. Parreira The spatial organization of centromeric heterochromatin during normal human lymphopoiesis: evidence for ontogenically determined spatial patterns Exp. Cell Res. 290 2003 358 369
    • (2003) Exp. Cell Res. , vol.290 , pp. 358-369
    • Alcobia, I.1    Quina, A.S.2    Neves, H.3    Clode, N.4    Parreira, L.5
  • 5
    • 0034161593 scopus 로고    scopus 로고
    • Spatial associations of centromeres in the nuclei of hematopoietic cells: Evidence for cell-type-specific organizational patterns
    • I. Alcobia, R. Dilão, and L. Parreira Spatial associations of centromeres in the nuclei of hematopoietic cells: evidence for cell-type-specific organizational patterns Blood 95 2000 1608 1615
    • (2000) Blood , vol.95 , pp. 1608-1615
    • Alcobia, I.1    Dilão, R.2    Parreira, L.3
  • 6
    • 0037148368 scopus 로고    scopus 로고
    • Transcriptional silencing at Saccharomyces telomeres: Implications for other organisms
    • W.-H. Tham, and V.A. Zakian Transcriptional silencing at Saccharomyces telomeres: implications for other organisms Oncogene 21 2002 512 521
    • (2002) Oncogene , vol.21 , pp. 512-521
    • Tham, W.-H.1    Zakian, V.A.2
  • 7
    • 0029969149 scopus 로고    scopus 로고
    • Effect of telomere length on telomeric gene expression
    • C.N. Sprung, L. Sabatier, and J.P. Murnane Effect of telomere length on telomeric gene expression Nucleic Acids Res. 24 1996 4336 4340
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4336-4340
    • Sprung, C.N.1    Sabatier, L.2    Murnane, J.P.3
  • 8
    • 0035874977 scopus 로고    scopus 로고
    • Telomere position effect in human cells
    • J.A. Baur, Y. Zou, J.W. Shay, and W.E. Wright Telomere position effect in human cells Science 292 2001 2075 2077
    • (2001) Science , vol.292 , pp. 2075-2077
    • Baur, J.A.1    Zou, Y.2    Shay, J.W.3    Wright, W.E.4
  • 10
    • 0032870656 scopus 로고    scopus 로고
    • The pattern of replication at a human telomeric region (16p13.3): Its relationship to chromosome structure and gene expression
    • Z.E. Smith, and D.R. Higgs The pattern of replication at a human telomeric region (16p13.3): its relationship to chromosome structure and gene expression Hum. Mol. Genet. 8 1999 1373 1386
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1373-1386
    • Smith, Z.E.1    Higgs, D.R.2
  • 11
    • 0345227304 scopus 로고    scopus 로고
    • Testing the position-effect variegation hypothesis for fascioscapulohumeral muscular dystrophy by analysis of histone modification and gene expression in subtelomeric 4q
    • G. Jiang, F. Yang, P.G.M. van Overveld, V. Vedanarayanan, S.M. van der Maarel, and M. Ehrlich Testing the position-effect variegation hypothesis for fascioscapulohumeral muscular dystrophy by analysis of histone modification and gene expression in subtelomeric 4q Hum. Mol. Genet. 12 2003 2909 2921
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 2909-2921
    • Jiang, G.1    Yang, F.2    Van Overveld, P.G.M.3    Vedanarayanan, V.4    Van Der Maarel, S.M.5    Ehrlich, M.6
  • 13
    • 0037452888 scopus 로고    scopus 로고
    • Senescence-specific gene expression fingerprints reveal cell-type-dependent physical clustering of up-regulated chromosomal loci
    • H. Zhang, K.-H. Pan, and S.N. Cohen Senescence-specific gene expression fingerprints reveal cell-type-dependent physical clustering of up-regulated chromosomal loci Proc. Natl. Acad. Sci. U. S. A. 100 2003 3251 3256
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 3251-3256
    • Zhang, H.1    Pan, K.-H.2    Cohen, S.N.3
  • 14
    • 0347694726 scopus 로고    scopus 로고
    • Chromosome positional effects of gene expressions after cellular senescence
    • H.-L. Chen, C.-Y. Lu, Y.-H. Hsu, and J.-J. Lin Chromosome positional effects of gene expressions after cellular senescence Biochem. Biophys. Res. Commun. 313 2004 576 586
    • (2004) Biochem. Biophys. Res. Commun. , vol.313 , pp. 576-586
    • Chen, H.-L.1    Lu, C.-Y.2    Hsu, Y.-H.3    Lin, J.-J.4
  • 16
    • 0026771276 scopus 로고
    • The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes
    • S. Saccone, A. De Sario, G.D. Valle, and G. Bernardi The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes Proc. Natl. Acad. Sci. U. S. A. 89 1992 4913 4917
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 4913-4917
    • Saccone, S.1    De Sario, A.2    Valle, G.D.3    Bernardi, G.4
  • 17
    • 0028301317 scopus 로고
    • The distribution of CpG islands in mammalian chromosomes
    • J.M. Craig, and W.A. Bickmore The distribution of CpG islands in mammalian chromosomes Nat. Genet. 7 1994 376 382
    • (1994) Nat. Genet. , vol.7 , pp. 376-382
    • Craig, J.M.1    Bickmore, W.A.2
  • 22
    • 0033557569 scopus 로고    scopus 로고
    • The nuclear topography of ABL, BCR, PML, and RARα genes: Evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation
    • H. Neves, C. Ramos, M.G. Silva, A. Parreira, and L. Parreira The nuclear topography of ABL, BCR, PML, and RARα genes: evidence for gene proximity in specific phases of the cell cycle and stages of hematopoietic differentiation Blood 93 1999 1197 1207
    • (1999) Blood , vol.93 , pp. 1197-1207
    • Neves, H.1    Ramos, C.2    Silva, M.G.3    Parreira, A.4    Parreira, L.5
  • 23
    • 0024526184 scopus 로고
    • Mapping replicational sites in the eukaryotic cell nucleus
    • H. Nakayasu, and R. Berezney Mapping replicational sites in the eukaryotic cell nucleus J. Cell Biol. 108 1989 1 11
    • (1989) J. Cell Biol. , vol.108 , pp. 1-11
    • Nakayasu, H.1    Berezney, R.2
  • 24
    • 0032562720 scopus 로고    scopus 로고
    • Visualization of single RNA transcripts in situ
    • A.M. Femino, F.S. Fay, K. Fogarty, and R.H. Singer Visualization of single RNA transcripts in situ Science 280 1998 585 590
    • (1998) Science , vol.280 , pp. 585-590
    • Femino, A.M.1    Fay, F.S.2    Fogarty, K.3    Singer, R.H.4
  • 26
    • 0025115231 scopus 로고
    • Factor required for mammalian assembly is localized to discrete regions in the nucleus
    • X.-D. Fu, and T. Maniatis Factor required for mammalian assembly is localized to discrete regions in the nucleus Nature 343 1990 437 441
    • (1990) Nature , vol.343 , pp. 437-441
    • Fu, X.-D.1    Maniatis, T.2
  • 27
    • 0028631862 scopus 로고
    • RAP1 stimulates single- to double-strand association of yeast telomeric DNA: Implications for telomere-telomere interactions
    • E. Gilson, T. Muller, J. Sogo, T. Laroche, and S.M. Gasser RAP1 stimulates single- to double-strand association of yeast telomeric DNA: implications for telomere-telomere interactions Nucleic Acids Res. 22 1994 5310 5320
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5310-5320
    • Gilson, E.1    Muller, T.2    Sogo, J.3    Laroche, T.4    Gasser, S.M.5
  • 28
    • 0036073248 scopus 로고    scopus 로고
    • T(15;17) in acute promyelocytic leukemia is not associated with submicroscopic deletions on der(17)
    • G. Specchia, F. Albano, C.T. Storlazzi, L. Anelli, A. Zagaria, V. Liso, and M. Rocchi t(15;17) in acute promyelocytic leukemia is not associated with submicroscopic deletions on der(17) Haematologica 87 2002 775 777
    • (2002) Haematologica , vol.87 , pp. 775-777
    • Specchia, G.1    Albano, F.2    Storlazzi, C.T.3    Anelli, L.4    Zagaria, A.5    Liso, V.6    Rocchi, M.7
  • 29
    • 0030005755 scopus 로고    scopus 로고
    • The I.M.A.G.E. Consortium: An integrated molecular analysis of genomes and their expression
    • G. Lennon, C. Auffray, M. Polymeropoulos, and M.B. Soares The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression Genomics 33 1996 151 152
    • (1996) Genomics , vol.33 , pp. 151-152
    • Lennon, G.1    Auffray, C.2    Polymeropoulos, M.3    Soares, M.B.4
  • 31
    • 0025793311 scopus 로고
    • Analysis of immunoglobulin and T cell receptor genes: Part I. Basic and technical aspects
    • J.J.M. Van Dongen, and I.L.M. Wolvers-Tettero Analysis of immunoglobulin and T cell receptor genes: Part I. Basic and technical aspects Clin. Chim. Acta 198 1991 1 91
    • (1991) Clin. Chim. Acta , vol.198 , pp. 1-91
    • Van Dongen, J.J.M.1    Wolvers-Tettero, I.L.M.2
  • 33
    • 0027322884 scopus 로고
    • DCC tumor suppressor gene is inactivated in hematologic malignancies showing monosomy 18
    • E. Porfiri, L.M. Secker-Walker, A.V. Hoffbrand, and J.F. Hancock DCC tumor suppressor gene is inactivated in hematologic malignancies showing monosomy 18 Blood 81 1993 2696 2701
    • (1993) Blood , vol.81 , pp. 2696-2701
    • Porfiri, E.1    Secker-Walker, L.M.2    Hoffbrand, A.V.3    Hancock, J.F.4
  • 34
    • 0029827128 scopus 로고    scopus 로고
    • Structure, subnuclear distribution, and nuclear matrix association of the mammalian telomeric complex
    • M.E. Ludérus, B. van Steensel, L. Chong, O.C. Sibon, F.F. Cremers, and T. de Lange Structure, subnuclear distribution, and nuclear matrix association of the mammalian telomeric complex J. Cell Biol. 135 1996 867 881
    • (1996) J. Cell Biol. , vol.135 , pp. 867-881
    • Ludérus, M.E.1    Van Steensel, B.2    Chong, L.3    Sibon, O.C.4    Cremers, F.F.5    De Lange, T.6
  • 36
    • 0043180471 scopus 로고    scopus 로고
    • Three-dimensional arrangements of centromeres and telomeres in nuclei of human and murine lymphocytes
    • C. Weierich, A. Brero, S. Stein, J. von Hase, C. Cremer, T. Cremer, and I. Solovei Three-dimensional arrangements of centromeres and telomeres in nuclei of human and murine lymphocytes Chromosome Res. 11 2003 485 502
    • (2003) Chromosome Res. , vol.11 , pp. 485-502
    • Weierich, C.1    Brero, A.2    Stein, S.3    Von Hase, J.4    Cremer, C.5    Cremer, T.6    Solovei, I.7
  • 38
    • 0041661943 scopus 로고    scopus 로고
    • Nuclear and territorial topography of chromosome telomeres in human lymphocytes
    • J. Amrichová, E. Lukášová, S. Kozubek, and M. Kozubek Nuclear and territorial topography of chromosome telomeres in human lymphocytes Exp. Cell Res. 289 2003 11 26
    • (2003) Exp. Cell Res. , vol.289 , pp. 11-26
    • Amrichová, J.1    Lukášová, E.2    Kozubek, S.3    Kozubek, M.4
  • 39
    • 1242329998 scopus 로고    scopus 로고
    • Promyelocytic leukaemia nuclear bodies associate with transcriptionally active genomic regions
    • J. Wang, C. Shiels, P. Sasieni, P.J. Wu, S.A. Islam, P.S. Freemont, and D. Sheer Promyelocytic leukaemia nuclear bodies associate with transcriptionally active genomic regions J. Cell Biol. 164 2004 515 526
    • (2004) J. Cell Biol. , vol.164 , pp. 515-526
    • Wang, J.1    Shiels, C.2    Sasieni, P.3    Wu, P.J.4    Islam, S.A.5    Freemont, P.S.6    Sheer, D.7
  • 41
    • 0033083793 scopus 로고    scopus 로고
    • Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division
    • K.E. Brown, J. Baxter, D. Graf, M. Merkenschlager, and A.G. Fisher Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division Mol. Cell 3 1999 207 217
    • (1999) Mol. Cell , vol.3 , pp. 207-217
    • Brown, K.E.1    Baxter, J.2    Graf, D.3    Merkenschlager, M.4    Fisher, A.G.5
  • 42
    • 0036525695 scopus 로고    scopus 로고
    • Allelic exclusion at the TCRbeta locus
    • B. Khor, and B.P. Sleckman Allelic exclusion at the TCRbeta locus Curr. Opin. Immunol. 14 2002 230 234
    • (2002) Curr. Opin. Immunol. , vol.14 , pp. 230-234
    • Khor, B.1    Sleckman, B.P.2
  • 43
    • 0141706933 scopus 로고    scopus 로고
    • Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: Evidence for local euchromatic neighbourhoods
    • L.S. Shopland, C.V. Johnson, M. Byron, J. McNeil, and J.B. Lawrence Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighbourhoods J. Cell Biol. 162 2003 981 990
    • (2003) J. Cell Biol. , vol.162 , pp. 981-990
    • Shopland, L.S.1    Johnson, C.V.2    Byron, M.3    McNeil, J.4    Lawrence, J.B.5
  • 44
    • 0035575519 scopus 로고    scopus 로고
    • From snapshots to moving pictures: New perspectives on nuclear organization
    • P. Heun, A. Taddei, and S.M. Gasser From snapshots to moving pictures: new perspectives on nuclear organization Trends Cell Biol. 11 2001 519 525
    • (2001) Trends Cell Biol. , vol.11 , pp. 519-525
    • Heun, P.1    Taddei, A.2    Gasser, S.M.3
  • 45
    • 0036006293 scopus 로고    scopus 로고
    • Chromatin motion is constrained by association with nuclear compartments in human cells
    • J.R. Chubb, S. Boyle, P. Perry, and W.A. Bickmore Chromatin motion is constrained by association with nuclear compartments in human cells Curr. Biol. 12 2002 439 445
    • (2002) Curr. Biol. , vol.12 , pp. 439-445
    • Chubb, J.R.1    Boyle, S.2    Perry, P.3    Bickmore, W.A.4
  • 46
    • 0024538097 scopus 로고
    • Regulation of the human β-actin promoter by upstream and intron domains
    • S.-Y. Ng, P. Gunning, S.-H. Liu, J. Leavitt, and L. Kedes Regulation of the human β-actin promoter by upstream and intron domains Nucleic Acids Res. 17 1989 601 615
    • (1989) Nucleic Acids Res. , vol.17 , pp. 601-615
    • Ng, S.-Y.1    Gunning, P.2    Liu, S.-H.3    Leavitt, J.4    Kedes, L.5
  • 48
    • 0036061468 scopus 로고    scopus 로고
    • Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei
    • R.R.E. Williams, S. Broad, D. Sheer, and J. Ragoussis Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei Exp. Cell Res. 272 2002 163 175
    • (2002) Exp. Cell Res. , vol.272 , pp. 163-175
    • Williams, R.R.E.1    Broad, S.2    Sheer, D.3    Ragoussis, J.4
  • 49
    • 2442695407 scopus 로고    scopus 로고
    • Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
    • S. Chambeyron, and W.A. Bickmore Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription Genes Dev. 18 2004 1119 1130
    • (2004) Genes Dev. , vol.18 , pp. 1119-1130
    • Chambeyron, S.1    Bickmore, W.A.2
  • 51
    • 0034050419 scopus 로고    scopus 로고
    • Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains
    • M. Nogami, O. Nogami, K. Kagotani, M. Okumura, H. Taguchi, T. Ikemura, and K. Okumura Intranuclear arrangement of human chromosome 12 correlates to large-scale replication domains Chromosoma 108 2000 514 522
    • (2000) Chromosoma , vol.108 , pp. 514-522
    • Nogami, M.1    Nogami, O.2    Kagotani, K.3    Okumura, M.4    Taguchi, H.5    Ikemura, T.6    Okumura, K.7
  • 52
    • 7244252921 scopus 로고    scopus 로고
    • The 4q subtelomere harboring the FSHD locus is specifically anchored with peripheral heterochromatin unlike most human telomeres
    • R. Tam, K.P. Smith, and J.B. Lawrence The 4q subtelomere harboring the FSHD locus is specifically anchored with peripheral heterochromatin unlike most human telomeres J. Cell Biol. 167 2004 269 279
    • (2004) J. Cell Biol. , vol.167 , pp. 269-279
    • Tam, R.1    Smith, K.P.2    Lawrence, J.B.3
  • 53
    • 0031713881 scopus 로고    scopus 로고
    • Organization of highly acetylated chromatin around sites of heterogeneous nuclear RNA accumulation
    • M.J. Hendzel, M.J. Kruhlak, and D.P. Bazett-Jones Organization of highly acetylated chromatin around sites of heterogeneous nuclear RNA accumulation Mol. Biol. Cell 9 1998 2491 2507
    • (1998) Mol. Biol. Cell , vol.9 , pp. 2491-2507
    • Hendzel, M.J.1    Kruhlak, M.J.2    Bazett-Jones, D.P.3
  • 54
    • 0029615378 scopus 로고
    • Nonrandom gene organization: Structural arrangements of specific pre-mRNA transcription and splicing with SC-35 domains
    • Y. Xing, C.V. Johnson, P.T. Moen Jr., J.A. McNeil, and J. Lawrence Nonrandom gene organization: structural arrangements of specific pre-mRNA transcription and splicing with SC-35 domains J. Cell Biol. 131 1995 1635 1647
    • (1995) J. Cell Biol. , vol.131 , pp. 1635-1647
    • Xing, Y.1    Johnson, C.V.2    Moen Jr., P.T.3    McNeil, J.A.4    Lawrence, J.5
  • 55
    • 0037164718 scopus 로고    scopus 로고
    • Live imaging of telomeres: YKu and Sir proteins define redundant telomere-anchoring pathways in yeast
    • F. Hediger, F.R. Neumann, G. Van Houwe, K. Dubrana, and S.M. Gasser Live imaging of telomeres: yKu and Sir proteins define redundant telomere-anchoring pathways in yeast Curr. Biol. 12 2002 2076 2089
    • (2002) Curr. Biol. , vol.12 , pp. 2076-2089
    • Hediger, F.1    Neumann, F.R.2    Van Houwe, G.3    Dubrana, K.4    Gasser, S.M.5
  • 56
    • 0026759324 scopus 로고
    • Cell cycle dependent chromosomal movement in pre-mitotic human T-lymphocyte nuclei
    • M. Ferguson, and D.C. Ward Cell cycle dependent chromosomal movement in pre-mitotic human T-lymphocyte nuclei Chromosoma 101 1992 557 565
    • (1992) Chromosoma , vol.101 , pp. 557-565
    • Ferguson, M.1    Ward, D.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.