-
1
-
-
0035969545
-
Decreased rate of coronary restenosis after lowering of plasma homocysteine levels
-
Schnyder, G., Roffi, M., Pin, R., Flammer, Y., Lange, H., Eberli, F. R., Meier, B., Turi, Z. G., and Hess, O. M. (2001) Decreased rate of coronary restenosis after lowering of plasma homocysteine levels, N. Engl. J. Med. 345, 1593-1600.
-
(2001)
N. Engl. J. Med.
, vol.345
, pp. 1593-1600
-
-
Schnyder, G.1
Roffi, M.2
Pin, R.3
Flammer, Y.4
Lange, H.5
Eberli, F.R.6
Meier, B.7
Turi, Z.G.8
Hess, O.M.9
-
2
-
-
0001010968
-
-
Francis, R. B., Jr., Ed. Marcel Dekker, New York
-
Ueland, P. M., Resfsum, H., and Brattstrom, L. (1992) in Plasma Homocysteine and Cardiovascular Disease (Francis, R. B., Jr., Ed.) pp 183-196, Marcel Dekker, New York.
-
(1992)
Plasma Homocysteine and Cardiovascular Disease
, pp. 183-196
-
-
Ueland, P.M.1
Resfsum, H.2
Brattstrom, L.3
-
3
-
-
0032563907
-
Inactivation of S-adenosyl-L-homocysteine hydrolase and antiviral activity with 5′,5′,6′,6′-tetradehydro-6′-deoxy- 6′-halohomoadenosine analogues (4′-haloacetylene analogues derived from adenosine)
-
Robins, M. J., Wnuk, S. F., Yang, X., Yuan, C. S., Borchardt, R. T., Balzarini, J., and De Clercq, E. (1998) Inactivation of S-adenosyl-L- homocysteine hydrolase and antiviral activity with 5′,5′,6′, 6′-tetradehydro-6′-deoxy-6′-halohomoadenosine analogues (4′-haloacetylene analogues derived from adenosine), J. Med. Chem. 41, 3857-3864.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 3857-3864
-
-
Robins, M.J.1
Wnuk, S.F.2
Yang, X.3
Yuan, C.S.4
Borchardt, R.T.5
Balzarini, J.6
De Clercq, E.7
-
4
-
-
0034669468
-
Overexpression, purification, and characterization of S-adenosylhomocysteine hydrolase from Leishmania donovani
-
Yang, X., and Borchardt, R. T. (2000) Overexpression, purification, and characterization of S-adenosylhomocysteine hydrolase from Leishmania donovani, Arch. Biochem. Biophys. 15, 272-280.
-
(2000)
Arch. Biochem. Biophys.
, vol.15
, pp. 272-280
-
-
Yang, X.1
Borchardt, R.T.2
-
5
-
-
0031947190
-
Structure determination of selenomethionyl S-adenosylhomocysteine hydrolase using data at a single wavelength
-
Turner, M. A., Yuan, C. S., Borchardt, R. T., Hershfield, M. S., Smith, G. D., and Howell, P. L. (1998) Structure determination of selenomethionyl S-adenosylhomocysteine hydrolase using data at a single wavelength, Nat. Struct. Biol. 5, 369-376.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 369-376
-
-
Turner, M.A.1
Yuan, C.S.2
Borchardt, R.T.3
Hershfield, M.S.4
Smith, G.D.5
Howell, P.L.6
-
6
-
-
0033614793
-
Crystal structure of S-adenosylhomocysteine hydrolase from rat liver
-
Hu, Y., Komoto, J., Huang, Y., Gomi, T., Ogawa, H., Takata, Y., Fujioka, M., and Takusagawa, F. (1999) Crystal structure of S-adenosylhomocysteine hydrolase from rat liver, Biochemistry 38, 8323-8333.
-
(1999)
Biochemistry
, vol.38
, pp. 8323-8333
-
-
Hu, Y.1
Komoto, J.2
Huang, Y.3
Gomi, T.4
Ogawa, H.5
Takata, Y.6
Fujioka, M.7
Takusagawa, F.8
-
7
-
-
0037465432
-
Catalytic strategy of S-adenosyl-L-homocysteine hydrolase: Transition-state stabilization and the avoidance of abortive reactions
-
Yang, X., Hu, Y., Yin, D. H., Turner, M. A., Wang, M., Borchardt, R. T., Howell, P. L., Kuczera, K., and Schowen, R. L. (2003) Catalytic strategy of S-adenosyl-L-homocysteine hydrolase: Transition-state stabilization and the avoidance of abortive reactions, Biochemistry 42, 1900-1909.
-
(2003)
Biochemistry
, vol.42
, pp. 1900-1909
-
-
Yang, X.1
Hu, Y.2
Yin, D.H.3
Turner, M.A.4
Wang, M.5
Borchardt, R.T.6
Howell, P.L.7
Kuczera, K.8
Schowen, R.L.9
-
8
-
-
0034664088
-
Substrate binding stabilizes S-adenosylhomocysteine hydrolase in a closed conformation
-
Yin, D., Yang, X., Hu, Y., Kuczera, K., Schowen, R. L., Borchardt, R. T., and Squier, T. C. (2000) Substrate binding stabilizes S-adenosylhomocysteine hydrolase in a closed conformation, Biochemistry 39, 9811-9818.
-
(2000)
Biochemistry
, vol.39
, pp. 9811-9818
-
-
Yin, D.1
Yang, X.2
Hu, Y.3
Kuczera, K.4
Schowen, R.L.5
Borchardt, R.T.6
Squier, T.C.7
-
9
-
-
0020647920
-
Functional significance of flexibility in proteins
-
Huber, R., and Bennett, W. S., Jr. (1983) Functional significance of flexibility in proteins, Biopolymers 22, 261-279.
-
(1983)
Biopolymers
, vol.22
, pp. 261-279
-
-
Huber, R.1
Bennett Jr., W.S.2
-
10
-
-
0032555216
-
The allosteric mechanism of the chaperonin GroEL: A dynamic analysis
-
Ma, J., and Karplus, M. (1998) The allosteric mechanism of the chaperonin GroEL: A dynamic analysis, Proc. Natl. Acad. Sci. U.S.A. 95, 8502-8507.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 8502-8507
-
-
Ma, J.1
Karplus, M.2
-
11
-
-
0003525155
-
-
Wiley and Sons, New York
-
Brooks, C. L., III, Karplus, M., and Pettitt, B. M. (1988) Proteins: A theoretical perspective of dynamics, structure and thermodynamics, Wiley and Sons, New York.
-
(1988)
Proteins: A Theoretical Perspective of Dynamics, Structure and Thermodynamics
-
-
Brooks III, C.L.1
Karplus, M.2
Pettitt, B.M.3
-
12
-
-
0031765856
-
The use of chemical shifts and their anisotropies in biomolecular structure determination
-
Case, D. A. (1998) The use of chemical shifts and their anisotropies in biomolecular structure determination, Curr. Opin. Struct. Biol. 8, 624-630.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 624-630
-
-
Case, D.A.1
-
13
-
-
0034308140
-
Building-block approach for determining low-frequency normal modes of macromolecules
-
Tama, F., Gadea, F. X., Marques, O., and Sanejouand, Y. H. (2000) Building-block approach for determining low-frequency normal modes of macromolecules, Proteins 41, 1-7.
-
(2000)
Proteins
, vol.41
, pp. 1-7
-
-
Tama, F.1
Gadea, F.X.2
Marques, O.3
Sanejouand, Y.H.4
-
15
-
-
0036510742
-
Inhibition of S-adenosylhomocysteine hydrolase by acyclic sugar adenosine analogue D-eritadenine. Crystal structure of S-adenosylhomocysteine hydrolase complexed with D-eritadenine
-
Huang, Y., Komoto, J., Takata, Y., Powell, D. R., Gomi, T., Ogawa, H., Fujioka, M., and Takusagawa, F. (2002) Inhibition of S-adenosylhomocysteine hydrolase by acyclic sugar adenosine analogue D-eritadenine. Crystal structure of S-adenosylhomocysteine hydrolase complexed with D-eritadenine, J. Biol. Chem. 277, 7477-7482.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 7477-7482
-
-
Huang, Y.1
Komoto, J.2
Takata, Y.3
Powell, D.R.4
Gomi, T.5
Ogawa, H.6
Fujioka, M.7
Takusagawa, F.8
-
16
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B. R., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) CHARMM: A program for macromolecular energy, minimization and dynamics calculations, J. Comput. Chem. 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Olafson, B.D.2
States, D.J.3
Swaminathan, S.4
Karplus, M.5
-
17
-
-
0024250301
-
Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
-
Brunger, A. T., and Karplus, M. (1988) Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison, Proteins 4, 148-156.
-
(1988)
Proteins
, vol.4
, pp. 148-156
-
-
Brunger, A.T.1
Karplus, M.2
-
18
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A. D., Jr., Bashford, D., Bellott, M., Dunbrack, R. L., Jr., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., III, Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D., and Karplus, M. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins, J. Phys. Chem. B 102, 3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher III, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
19
-
-
0001015978
-
+, NADH, and the Pyrophosphate Groups of Nucleotides
-
+, NADH, and the Pyrophosphate Groups of Nucleotides, J. Comput. Chem. 18, 221-239.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 221-239
-
-
Pavelites, J.J.1
Bash, P.A.2
Gao, J.3
MacKerell Jr., A.D.4
-
20
-
-
0028454915
-
A new approach for determining low-frequency normal modes in macromolecules
-
Durand, P. T. G., and Sanejouand, Y.-H. (1994) A new approach for determining low-frequency normal modes in macromolecules, Biopolymers 34, 759-771.
-
(1994)
Biopolymers
, vol.34
, pp. 759-771
-
-
Durand, P.T.G.1
Sanejouand, Y.-H.2
-
22
-
-
0037151004
-
Catalytic mechanism of S-adenosylhomocysteine hydrolase. Site-directed mutagenesis of Asp-130, Lys-185, Asp-189, and Asn-190
-
Takata, Y., Yamada, T., Huang, Y., Komoto, J., Gomi, T., Ogawa, H., Fujioka, M., and Takusagawa, F. (2002) Catalytic mechanism of S-adenosylhomocysteine hydrolase. Site-directed mutagenesis of Asp-130, Lys-185, Asp-189, and Asn-190, J. Biol. Chem. 277, 22670-22676.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 22670-22676
-
-
Takata, Y.1
Yamada, T.2
Huang, Y.3
Komoto, J.4
Gomi, T.5
Ogawa, H.6
Fujioka, M.7
Takusagawa, F.8
-
23
-
-
0023104358
-
Structure of bacteriophage T4 lysozyme refined at 1.7 Å resolution
-
Weaver, L. H., and Matthews, B. W. (1987) Structure of bacteriophage T4 lysozyme refined at 1.7 Å resolution, J. Mol. Biol. 193, 189-199.
-
(1987)
J. Mol. Biol.
, vol.193
, pp. 189-199
-
-
Weaver, L.H.1
Matthews, B.W.2
-
24
-
-
0345973041
-
Gaussian Dynamics of Folded Proteins
-
Haliloglu, T., Bahar, I., and Erman, B. (1997) Gaussian Dynamics of Folded Proteins, Phys. Rev. Lett. 79, 3090-3093.
-
(1997)
Phys. Rev. Lett.
, vol.79
, pp. 3090-3093
-
-
Haliloglu, T.1
Bahar, I.2
Erman, B.3
-
25
-
-
18544363371
-
-
Ph.D. Thesis, University of Kansas, Lawrence, KS
-
Wang, M. (2005) Studies of role of hinge regions in structure, dynamics and mechanism of S-adenosylhomocysteine hydrolase, Ph.D. Thesis, University of Kansas, Lawrence, KS.
-
(2005)
Studies of Role of Hinge Regions in Structure, Dynamics and Mechanism of S-adenosylhomocysteine Hydrolase
-
-
Wang, M.1
-
26
-
-
0003422324
-
-
Dover Publications, New York
-
Bright Wilson, E., Jr., Decius, J. C., and Cross, P. C. (1980) Molecular Vibrations: The Theory of Infrared and Raman Vibrational Spectra, Dover Publications, New York.
-
(1980)
Molecular Vibrations: The Theory of Infrared and Raman Vibrational Spectra
-
-
Bright Wilson Jr., E.1
Decius, J.C.2
Cross, P.C.3
-
27
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
Tama, F., and Sanejouand, Y.-H. (2001) Conformational change of proteins arising from normal mode calculations, Protein Eng. 14, 1-6.
-
(2001)
Protein Eng.
, vol.14
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.-H.2
-
28
-
-
0002197305
-
Reaction path studies in biological molecules
-
Elber, R., Ed. World Scientific, Singapore
-
Elber, R. (1996) Reaction path studies in biological molecules, in Recent Developments in Theoretical Studies of Proteins (Elber, R., Ed.) pp 65-135, World Scientific, Singapore.
-
(1996)
Recent Developments in Theoretical Studies of Proteins
, pp. 65-135
-
-
Elber, R.1
-
29
-
-
0000658538
-
Langevin modes of macromolecules
-
Lamm, G., and Szabo, A. (1986) Langevin modes of macromolecules, J. Chem. Phys. 85, 7334-7348.
-
(1986)
J. Chem. Phys.
, vol.85
, pp. 7334-7348
-
-
Lamm, G.1
Szabo, A.2
-
30
-
-
0027732618
-
Effect of solvent on collective motions in globular proteins
-
Hayward, S., Kitao, A., Hirata, F., and Go, N. (1993) Effect of solvent on collective motions in globular proteins, J. Mol. Biol. 234, 1207-1217.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 1207-1217
-
-
Hayward, S.1
Kitao, A.2
Hirata, F.3
Go, N.4
-
31
-
-
0037233422
-
Ion permeation through the gramicidin channel: Atomically detailed modeling by the stochastic difference equation
-
Siva, K., and Elber, R. (2003) Ion permeation through the gramicidin channel: Atomically detailed modeling by the stochastic difference equation, Proteins 50, 63-80.
-
(2003)
Proteins
, vol.50
, pp. 63-80
-
-
Siva, K.1
Elber, R.2
-
32
-
-
0025786181
-
Mechanism of bovine liver S-adenosylhomocysteine hydrolase. Steady-state and pre-steadystate kinetic analysis
-
Porter, D. J., and Boyd, F. L. (1991) Mechanism of bovine liver S-adenosylhomocysteine hydrolase. Steady-state and pre-steadystate kinetic analysis, J. Biol. Chem. 266, 21616-21625.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 21616-21625
-
-
Porter, D.J.1
Boyd, F.L.2
-
33
-
-
0032540945
-
A novel mechanism-based inhibitor (6′-bromo-5′,6′- didehydro-6′-deoxy-6′-fluorohomoadenosine) that covalently modifies human placental S-adenosylhomocysteine hydrolase
-
Yuan, C.-S., Wnuk, S. F., Robins, M. J., and Borchardt, R. T. (1998) A novel mechanism-based inhibitor (6′-bromo-5′,6′-didehydro- 6′-deoxy-6′-fluorohomoadenosine) that covalently modifies human placental S-adenosylhomocysteine hydrolase, J. Biol. Chem. 273, 18191-18198.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 18191-18198
-
-
Yuan, C.-S.1
Wnuk, S.F.2
Robins, M.J.3
Borchardt, R.T.4
-
34
-
-
0037172784
-
Contributions of active site residues to the partial and overall catalytic activities of human S-adenosylhomocysteine hydrolase
-
Elrod, P., Zhang, J., Yang, X., Yin, D., Hu, Y., Borchardt, R. T., and Schowen, R. L. (2002) Contributions of active site residues to the partial and overall catalytic activities of human S-adenosylhomocysteine hydrolase, Biochemistry 41, 8134-8142.
-
(2002)
Biochemistry
, vol.41
, pp. 8134-8142
-
-
Elrod, P.1
Zhang, J.2
Yang, X.3
Yin, D.4
Hu, Y.5
Borchardt, R.T.6
Schowen, R.L.7
-
35
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. (1991) MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24, 946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.1
|