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Volumn 330, Issue 1-2, 2004, Pages 123-131

Evolution of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae

Author keywords

Base pair(s); Bp; INT; Integrase; Kb; Kilobase; Long terminal repeat(s); LTR; Maximum parsimony; Million years; Minus primer binding site; MP; Myr; Neighbor joining; NJ; Open reading frame; ORF; PBS ; Phylogeny; PR; Protease; Recombination; RNase; Turnover rate

Indexed keywords

ANOPHELES GAMBIAE; ARTICLE; CELL LINEAGE; CLADISTICS; CONTROLLED STUDY; DROSOPHILA; FRAGMENTATION REACTION; GENE; GENE MUTATION; LONG TERMINAL REPEAT; MDG1 GENE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROBABILITY; RETROPOSON; STATISTICAL SIGNIFICANCE;

EID: 1842850812     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.01.012     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 0034908064 scopus 로고    scopus 로고
    • CsRn1, a novel active retrotransposon in a parasitic trematode, Clonorchis sinensis, discloses a new phylogenetic clade of Ty3/gypsy-like LTR retrotransposons
    • Bae Y.-A., Moon S.-Y., Kong Y., Cho S.-Y., Rhyu M.-G. CsRn1, a novel active retrotransposon in a parasitic trematode, Clonorchis sinensis, discloses a new phylogenetic clade of Ty3/gypsy-like LTR retrotransposons. Mol. Biol. Evol. 18:2001;1474-1483.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1474-1483
    • Bae, Y.-A.1    Moon, S.-Y.2    Kong, Y.3    Cho, S.-Y.4    Rhyu, M.-G.5
  • 4
    • 0034828182 scopus 로고    scopus 로고
    • Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside
    • Bowen N.J., McDonald J.F. Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Res. 11:2001;1527-1540.
    • (2001) Genome Res. , vol.11 , pp. 1527-1540
    • Bowen, N.J.1    McDonald, J.F.2
  • 5
    • 0031452212 scopus 로고    scopus 로고
    • Population genetics models of transposable elements
    • Brookfield J.F.Y., Badge R.M. Population genetics models of transposable elements. Genetica. 100:1997;281-294.
    • (1997) Genetica , vol.100 , pp. 281-294
    • Brookfield, J.F.Y.1    Badge, R.M.2
  • 6
    • 0031297912 scopus 로고    scopus 로고
    • Transposable element distributions in Drosophila
    • Charlesworth B., Langley C.H., Sniegowski P. Transposable element distributions in Drosophila. Genetics. 147:1997;1993-1995.
    • (1997) Genetics , vol.147 , pp. 1993-1995
    • Charlesworth, B.1    Langley, C.H.2    Sniegowski, P.3
  • 7
    • 0034143269 scopus 로고    scopus 로고
    • Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao-like retrotransposons
    • Cook J.M., Martin J., Lewin A., Sinden R.E., Tristem M. Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao-like retrotransposons. Insect Mol. Biol. 9:2000;109-117.
    • (2000) Insect Mol. Biol. , vol.9 , pp. 109-117
    • Cook, J.M.1    Martin, J.2    Lewin, A.3    Sinden, R.E.4    Tristem, M.5
  • 8
    • 0033973992 scopus 로고    scopus 로고
    • Evolutionary history of the human endogenous retrovirus family ERV9
    • Costas J., Naveira H. Evolutionary history of the human endogenous retrovirus family ERV9. Mol. Biol. Evol. 17:2000;320-330.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 320-330
    • Costas, J.1    Naveira, H.2
  • 9
    • 0034871188 scopus 로고    scopus 로고
    • Structural features of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons inferred from the phylogenetic analyses of its open reading frames
    • Costas J., Valadé E., Naveira H. Structural features of the mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons inferred from the phylogenetic analyses of its open reading frames. J. Mol. Evol. 53:2001;165-171.
    • (2001) J. Mol. Evol. , vol.53 , pp. 165-171
    • Costas, J.1    Valadé, E.2    Naveira, H.3
  • 10
    • 0034536408 scopus 로고    scopus 로고
    • Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans
    • Duret L., Marais G., Biémont C. Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans. Genetics. 156:2000;1661-1669.
    • (2000) Genetics , vol.156 , pp. 1661-1669
    • Duret, L.1    Marais, G.2    Biémont, C.3
  • 11
    • 0036889395 scopus 로고    scopus 로고
    • Fruit flies and humans respond differently to retrotransposons
    • Eickbush T.H., Furano A.V. Fruit flies and humans respond differently to retrotransposons. Curr. Opin. Genet. Dev. 12:2002;669-674.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 669-674
    • Eickbush, T.H.1    Furano, A.V.2
  • 12
    • 0020447816 scopus 로고
    • Selfish DNA: A sexually-transmitted nuclear parasite
    • Hickey D.A. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics. 101:1982;519-531.
    • (1982) Genetics , vol.101 , pp. 519-531
    • Hickey, D.A.1
  • 13
    • 0037020114 scopus 로고    scopus 로고
    • The genome sequence of the malaria mosquito Anopheles gambiae
    • Holt R.A.et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science. 298:2002;129-149.
    • (2002) Science , vol.298 , pp. 129-149
    • Holt, R.A.1
  • 14
    • 2042437650 scopus 로고    scopus 로고
    • Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 15
    • 0012341115 scopus 로고    scopus 로고
    • The transposable elements of the Drosophila melanogaster euchromatin: A genomics perspective
    • (research0084.1-0084.20)
    • Kaminker J.S.et al. The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective. Genome Biol. 3:2002;. (research0084.1-0084.20).
    • (2002) Genome Biol. , vol.3
    • Kaminker, J.S.1
  • 16
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • Kapitonov V.V., Jurka J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl. Acad. Sci. U. S. A. 100:2003;6569-6574.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 18
    • 0037000023 scopus 로고    scopus 로고
    • Intracellular battlegrounds: Conflict and cooperation between transposable elements
    • Leonardo T.E., Nuzhdin S.V. Intracellular battlegrounds: conflict and cooperation between transposable elements. Genet. Res. 80:2002;155-161.
    • (2002) Genet. Res. , vol.80 , pp. 155-161
    • Leonardo, T.E.1    Nuzhdin, S.V.2
  • 19
    • 0042525765 scopus 로고    scopus 로고
    • Sequence divergence within transposable element families in the Drosophila melanogaster genome
    • Lerat E., Rizzon C., Biémont C. Sequence divergence within transposable element families in the Drosophila melanogaster genome. Genome Res. 13:2003;1889-1896.
    • (2003) Genome Res. , vol.13 , pp. 1889-1896
    • Lerat, E.1    Rizzon, C.2    Biémont, C.3
  • 20
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland: Sinauer Associates
    • Li W.H. Molecular Evolution. 1997;191 Sinauer Associates, Sunderland.
    • (1997) Molecular Evolution , pp. 191
    • Li, W.H.1
  • 21
    • 0042420364 scopus 로고    scopus 로고
    • A co-opted gypsy-type LTR-retrotransposon is conserved in the genomes of humans, sheep, mice, and rats
    • Lynch C., Tristem M. A co-opted gypsy-type LTR-retrotransposon is conserved in the genomes of humans, sheep, mice, and rats. Curr. Biol. 13:2003;1518-1523.
    • (2003) Curr. Biol. , vol.13 , pp. 1518-1523
    • Lynch, C.1    Tristem, M.2
  • 22
    • 0033057257 scopus 로고    scopus 로고
    • Modular evolution of the integrase domain in the Ty3/gypsy class of LTR retrotransposons
    • Malik H.S., Eickbush T.H. Modular evolution of the integrase domain in the Ty3/gypsy class of LTR retrotransposons. J. Virol. 73:1999;5186-5190.
    • (1999) J. Virol. , vol.73 , pp. 5186-5190
    • Malik, H.S.1    Eickbush, T.H.2
  • 23
    • 0034124697 scopus 로고    scopus 로고
    • Genetic reassortment and patch repair by recombination in retroviruses
    • Mikkelsen J.G., Pedersen F.S. Genetic reassortment and patch repair by recombination in retroviruses. J. Biomed. Sci. 7:2000;77-99.
    • (2000) J. Biomed. Sci. , vol.7 , pp. 77-99
    • Mikkelsen, J.G.1    Pedersen, F.S.2
  • 24
    • 0029942875 scopus 로고    scopus 로고
    • Distribution of T1, Q, Pegasus and mariner transposable elements on the polytene chromosomes of PEST, a standard strain of Anopheles gambiae
    • Mukabayire O., Besansky N.J. Distribution of T1, Q, Pegasus and mariner transposable elements on the polytene chromosomes of PEST, a standard strain of Anopheles gambiae. Chromosoma. 104:1996;585-595.
    • (1996) Chromosoma , vol.104 , pp. 585-595
    • Mukabayire, O.1    Besansky, N.J.2
  • 25
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:1986;418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 26
    • 0036121338 scopus 로고    scopus 로고
    • Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome
    • Rizzon C., Marais G., Gouy M., Biémont C. Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome. Genome Res. 12:2002;400-407.
    • (2002) Genome Res. , vol.12 , pp. 400-407
    • Rizzon, C.1    Marais, G.2    Gouy, M.3    Biémont, C.4
  • 27
    • 0010470141 scopus 로고    scopus 로고
    • Evolution and phylogeny of insect endogenous retroviruses
    • Terzian C., Pélisson A., Bucheton A. Evolution and phylogeny of insect endogenous retroviruses. BMC Evol. Biol. I:2001;3.
    • (2001) BMC Evol. Biol. , vol.1 , pp. 3
    • Terzian, C.1    Pélisson, A.2    Bucheton, A.3
  • 28
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • Xiong Y., Eickbush T.H. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9:1990;3353-3362.
    • (1990) EMBO J. , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.