Intracellular battlegrounds: Conflict and cooperation between transposable elements

Genetical Research

Volumn 80, Issue 3, 2002, Pages 155-161

  Leonardo, Teresa E ^a   Nuzhdin, Sergey V ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

CHROMOSOME; CONTROLLED STUDY; DATA ANALYSIS; DNA PURIFICATION; DROSOPHILA; GENE AMPLIFICATION; GENE CONTROL; GENE DUPLICATION; GENE INSERTION; GENE INTERACTION; GENETIC SELECTION; GENOME; HOST CELL; HOST SELECTION; LIFE CYCLE; MOLECULAR EVOLUTION; NONHUMAN; PARASITE; REVIEW; TRANSPOSON;

ANIMALS; DNA TRANSPOSABLE ELEMENTS; EPISTASIS, GENETIC; EVOLUTION, MOLECULAR; FUNGI; HUMANS;

ARACHNIDA; HEXAPODA; ILEX COOKII; INSERTION SEQUENCES; TRANSPOSONS;

EID: 0037000023     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672302009710     Document Type: Review

References (48)

1. Antia, R., Levin, B. R. & Mays, R. M. (1994). Within-host population dynamics and the evolution and maintenance of microparasite virulence. American Naturalist 144, 457-472.
2. Arkhipova, I. R., Lyubomirskaya, N. V. & Ilyin, Yu. V. (1995). Drosophila Retrotransposons. Austin: R. G. Landes Co.
3. Berg, D. E. & Howe, M. M. (1989). Mobile DNA. American Society for Microbiology, Washington, D.C.
4. Brookfield, J. F. Y. (1996). Models of the spread of non-autonomous selfish transposable elements when transposition and fitness are coupled. Genetical Research 67, 199-210.
5. Brookfield, J. F. & Badge, R. M. (1997). Population genetics models of transposable elements. Genetica 100, 281-294.
6. Chao, L., Hanley, K. A., Burch, C. L., Dahlberg, C. & Turner, P. E. (2000). Kin selection and parasite evolution: higher and lower virulence with hard and soft selection. Quarterly Review of Biology 75, 261-275.
7. Charlesworth, B. & Langley, C. H. (1986). The evolution of self-regulated transposition of transposable elements. Genetics 112, 359-383.
8. Charlesworth, B. & Langley, C. H. (1989). The population genetics of Drosophila transposable elements. Annual Review of Genetics 23, 251-287.
9. Charlesworth, B., Sniegowski, P. & Stephan W. (1994). The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371, 215-220.
10. Danilevskaya, O., Slot, F., Traverse, K. L., Hogan, N. C. & Pardue, M. L. (1994). The Drosophila telomere transposon HeT-A produces a transcript with tightly bound protein. Proceedings of the National Academy of Sciences of the USA 91, 6679-6682.
11. Dugatkin, L. A. (1997). The evolution of cooperation. BioScience 47, 355-362.
12. Eickbush, T. (1994). Origin and evolutionary relationships of retroelements. In The evolutionary biology of viruses. (ed. Morse S. S.), pp. 121-157. New York: Raven Press.
13. Finnegan, D. J. (1992). Transposable elements. In The genome of Drosophila melanogaster (ed. D. L. Lindsley & G. Zimm), pp. 1096-1107. New York: Academic Press.
14. Hartl, D. L., Lozovskaya, E. R., Nurminsky, D. I. & Lohe, A. R. (1997). What restricts the activity of mariner-like transposable elements? Trends in Genetics 13, 197-201.
15. Hickey, D. A. (1982). Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101, 519-31.
16. Gloor, G. B., Preston, C. R., Johnson-Schlitz, D. M., Nassif, N. A., Phillis, R. W., Benz, W. K., Robertson, H. M. & Engels, W. R. (1993). Type I repressors of P element mobility. Genetics 135, 81-95.
17. Goodwin, T. J. D. & Poulter, R. T. M. (2000). Multiple LTR-retrotransposon families in the asexual yeast Candida albicans. Genome Research 10, 174-191.
18. Grebenshikov, B. (2002). In The sister chaos. Union Studio: Moscow.
19. Kazazian, H. H., Wong, C., Youssoufian, H., Scott, A. F., Phillips, D. G. & Antonarakis, S. E. (1988). Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332, 164-166.
20. Kazazian, H. H. Jr. & Moran, J. V. (1998). The impact of L1 retrotransposons on the human genome. Nature Genetics 19, 19-24.
21. Kidwell, M. G. & Lisch, D. R. (2001). Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 55, 1-24.
22. Kim, A. I., Lyubomirskaya, N. V., Belyaeva E. S., Shostack, N. G. & Ilyuin, Y. V. (1994). The introduction of a transpositionally active copy of retrotransposon gypsy into the stable strain of Drosophila melanogaster causes genetic instability. Molecular & General Genetics 242, 472-477.
23. Lankenau, S., Corces, V. G. & Lankenau, D. H. (1994). The Drosophila micropia retrotransposon encodes a testes-specific antisense RNA complimentary to reverse transcriptase. Molecular and Cellular Biology 14, 1764-1775.
24. Levin, B. R., Lipsitch, M. & Bonhoeffer, S. (1999). Population biology, evolution, and infectious disease: Convergence and synthesis. Science 283, 806-809.
25. Lohe, A. R., Sullivan, D. T. & Hartl, D. L. (1996). Subunit interactions in the mariner transposase. Genetics 144, 1087-1095.
26. Luan, D. D., Korman, M. H., Jakubczak, J. L. & Eickbush, T. H. (1993). Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition. Cell 72, 595-605.
27. Lyubomirskaya, N. V., Arkhipova, I. R. & Ilyin, Y. V. (1990). Molecular analysis of the gypsy (mdg4) retrotransposon in two Drosophila melanogaster strains differing by genetic instability. Molecular & General Genetics 223, 305-309.
28. Lyubomirskaya, N. V., Avedisov, S. N., Surkov, S. A. & Ilyin, Y. V. (1993). Two Drosophila retrotransposon gypsy subfamilies differ in ability to produce new DNA copies via reverse transcription in Drosophila cultured cells. Nucleic Acids Research 21, 3265-3268.
29. Malik, H. S. & Eickbush, T. H. (1998). The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs. Molecular Biology and Evolution 15, 1123-1134.
30. Martin, S. L. (1991). Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells. Molecular and Cellular Biology 11, 4804-4807.
31. Martin, S. L. & Branciforte, D. (1993). Synchronous expression of LINE-1 RNA and protein in mouse embryonal carcinoma cells. Molecular and Cellular Biology 13, 5383-5392.
32. McDonald, J. F., Matyunina, L. V., Wilson, S., Jordan, I. K., Bowen, N. J. & Miller, W. J. (1997). LTR retrotransposons and the evolution of eukaryotic enhancers. Genetica 100, 3-13.
33. Montgomery, E., Charlesworth, B. & Langley C. H. (1987). A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. Genetical Research 49, 31-41.
34. Nuzhdin, S. V. & Mackay, T. F. C. (1995). The genomic rate of transposable element movement in Drosophila melanogaster. Molecular Biology and Evolution 12, 180-181.
35. Nuzhdin, S. V., Pasyukova, E. G., Morozova, E. A. & Flavell, A. J. (1998). Quantitative genetic analysis of copia retrotransposon activity in inbred Drosophila melanogaster lines. Genetics 150, 755-766.
36. Nuzhdin, S. V. & Petrov, D. (2002). Transposable elements in clonal population: lethal hangover from sex. Biological Journal of the Linnean Society (in press).
37. Pasyukova, E. G., Nuzhdin, S. V., Morozova, T. V. & Mackay, T. F. C. (2002). Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness. Molecular & General Genetics (submitted).
38. Pelissier, T., Tatout, C., Lavige, J.-M., Busseau, I., Bucheton, A. & Deragon, J.-M. (2002). Utilization of the IR hybrid dysgenesis system in Drosophila to test in vivo mobilization of synthetic SINEs sharing 3′ homology with the I factor. Gene 285, 239-245.
39. Pelisson, A., Finnegan, D. J. & Bucheton, A. (1991). Evidence for retrotransposition of the I factor, a LINE element of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the USA 88, 4907-4910.
40. Pelisson, A., Song, S. U., Prud'homme, N., Smith, P. A., Bucheton, A. & Corces, V. G. (1994). Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. EMBO Journal 13, 4401-4411.
41. Pelisson, A., Teysset, L., Chalvet, F., Kim, A., Prud'homme, N., Terzian, C. & Bucheton, A. (1997). About the origin of retroviruses and the co-evolution of the gypsy retrovirus with the Drosophila flamenco host gene. Genetica 100, 29-37.
42. Pianka, E. R. (2000). Evolutionary ecology. 6th ed. San Francisco, Calif.: Benjamin Cummings.
43. Plasterk, R. H. A. (2002). RNA silencing: the genome's immune system. Science 296, 1263-1265.
44. Shedlock, A. M. & Okada, N. (2000). SINE insertions: powerful tools for molecular systematics. BioEssays 22, 148-160.
45. Sundararajan, P., Atkinson, P. W. & O'Brochta, D. A. (1999). Transposable element interactions in insects: crossmobilization of hobo and Hermes. Insect Molecular Biology 8, 359-368.
46. Turner, P. E. & Chao, L. (1998). Sex and the evolution of intrahost competition in RNA virus variant phi6. Genetics 150, 523-532.
47. Turner, P. E., Burch, C. L., Hanley, K. A. & Chao, L. (1999). Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage variant phi6. Journal of Virology 73, 2420-2424.
48. Yoshioka, K., Honma, H., Zushi, M., Kondo, S., Togashi, S., Miyaki, T. & Shiba, T. (1990). Virus-like particle formation of Drosophila copia through autocatalytic processing. EMBO Journal 9, 535-541.