-
1
-
-
2942708194
-
SURFCOMP: A novel graph-based approach to molecular surface comparison
-
Hofbauer, C.; Lohninger, H.; Aszódi, A. SURFCOMP: a novel graph-based approach to molecular surface comparison. J. Chem. Inf. Comput. Sci 2004, 44, 837-847.
-
(2004)
J. Chem. Inf. Comput. Sci
, vol.44
, pp. 837-847
-
-
Hofbauer, C.1
Lohninger, H.2
Aszódi, A.3
-
2
-
-
77956826048
-
SH2 and SH3 domains: Choreographers of multiple signaling pathways
-
Botfield, M. C.; Green, J. SH2 and SH3 domains: choreographers of multiple signaling pathways. Annu. Rep. Med. Chem. 1995, 30, 227-237.
-
(1995)
Annu. Rep. Med. Chem.
, vol.30
, pp. 227-237
-
-
Botfield, M.C.1
Green, J.2
-
3
-
-
0037322612
-
Binding of SAP SH2 domain to FynT SH3 domain reveals a novel mechanism of receptor signalling in immune regulation
-
Latour, S.; Roncagalli, R.; Chen, R.; Bakinowski, M.; Shi, X.; Schwartzberg, P. L.; Davidson, D.; Veillette, A. Binding of SAP SH2 domain to FynT SH3 domain reveals a novel mechanism of receptor signalling in immune regulation. Nat. Cell Biol. 2003, 5, 149-154.
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 149-154
-
-
Latour, S.1
Roncagalli, R.2
Chen, R.3
Bakinowski, M.4
Shi, X.5
Schwartzberg, P.L.6
Davidson, D.7
Veillette, A.8
-
4
-
-
0037320641
-
SAP couples Fyn to SLAM immune receptors
-
Chan, B.; Lanyi, A.; Song, H. K.; Griesbach, J.; Simarro-Grande, M.; Poy, F.; Howie, D.; Sumegi, J.; Terhorst, C.; Eck, M. J. SAP couples Fyn to SLAM immune receptors. Nat. Cell Biol. 2003, 5, 155-160.
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 155-160
-
-
Chan, B.1
Lanyi, A.2
Song, H.K.3
Griesbach, J.4
Simarro-Grande, M.5
Poy, F.6
Howie, D.7
Sumegi, J.8
Terhorst, C.9
Eck, M.J.10
-
5
-
-
0035063939
-
X-linked lymphoproliferative disease: A progressive immunodeficiency
-
Morra, M.; Howie, D.; Grande, M. S.; Sayos, J.; Wang, N.; Wu, C.; Engel, P.; Terhorst, C. X-linked lymphoproliferative disease: a progressive immunodeficiency. Annu. Rev. Immunol. 2001, 19, 657-682.
-
(2001)
Annu. Rev. Immunol.
, vol.19
, pp. 657-682
-
-
Morra, M.1
Howie, D.2
Grande, M.S.3
Sayos, J.4
Wang, N.5
Wu, C.6
Engel, P.7
Terhorst, C.8
-
6
-
-
17944380327
-
Structural basis for the interaction of the free SH2 domain EAT-2 with SLAM receptors in hematopoietic cells
-
Morra, M. Structural basis for the interaction of the free SH2 domain EAT-2 with SLAM receptors in hematopoietic cells. EMBO J. 2001, 20, 5840.
-
(2001)
EMBO J.
, vol.20
, pp. 5840
-
-
Morra, M.1
-
7
-
-
0037423385
-
Dual functional roles for the X-linked lymphoproliferative syndrome gene product SAP/SH2D1A in signaling through the signaling lymphocyte activation molecule (SLAM) family of immune receptors
-
Li, C.; Iosef, C.; Jia, C. Y.; Han, V. K.; Li, S. S. Dual functional roles for the X-linked lymphoproliferative syndrome gene product SAP/SH2D1A in signaling through the signaling lymphocyte activation molecule (SLAM) family of immune receptors. J. Biol. Chem. 2003, 278, 3852-3859.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 3852-3859
-
-
Li, C.1
Iosef, C.2
Jia, C.Y.3
Han, V.K.4
Li, S.S.5
-
8
-
-
0033518296
-
Novel mode of ligand binding by the SH2 domain of the human XLP disease gene product SAP/ SH2D1A
-
Li, S. C.; Gish, G.; Yang, D.; Coffey, A. J.; Forman-Kay, J. D.; Ernberg, I.; Kay, L. E.; Pawson, T. Novel mode of ligand binding by the SH2 domain of the human XLP disease gene product SAP/ SH2D1A. Curr. Biol. 1999, 9, 1355-1362.
-
(1999)
Curr. Biol.
, vol.9
, pp. 1355-1362
-
-
Li, S.C.1
Gish, G.2
Yang, D.3
Coffey, A.J.4
Forman-Kay, J.D.5
Ernberg, I.6
Kay, L.E.7
Pawson, T.8
-
9
-
-
0033613813
-
Recognition of spatial motifs in protein structures
-
Kleywegt, J. Recognition of spatial motifs in protein structures. J. Mol. Biol. 1999, 285, 1887.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1887
-
-
Kleywegt, J.1
-
10
-
-
0032146156
-
Deciphering cryptic similarities in protein binding sites
-
Kauvar, M. Deciphering cryptic similarities in protein binding sites. Curr. Opin. Biotechnol. 1998, 9, 390.
-
(1998)
Curr. Opin. Biotechnol.
, vol.9
, pp. 390
-
-
Kauvar, M.1
-
11
-
-
0037661398
-
A new bioinformatic approach to detect common 3D sites in protein structures
-
Jambon, M. A new bioinformatic approach to detect common 3D sites in protein structures. Proteins 2003, 52, 137.
-
(2003)
Proteins
, vol.52
, pp. 137
-
-
Jambon, M.1
-
12
-
-
0037414461
-
A new topological method to measure protein structure similarity
-
Bostick, D. A new topological method to measure protein structure similarity. Biochem. Biophys. Res. Commun. 2003, 304, 320.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.304
, pp. 320
-
-
Bostick, D.1
-
13
-
-
0035014140
-
Comparing protein structures: A Gaussian-based approach to the three-dimensional structural similarity of proteins
-
Maggiora, M. Comparing protein structures: a Gaussian-based approach to the three-dimensional structural similarity of proteins. J. Mol. Graphics 2001, 19, 168.
-
(2001)
J. Mol. Graphics
, vol.19
, pp. 168
-
-
Maggiora, M.1
-
14
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B.; Richards, F. M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 1971, 55, 379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
15
-
-
0000538815
-
Analytical molecular surface calculation
-
Connolly, M. L. Analytical molecular surface calculation. J. Appl. Crystallogr. 1983, 16, 548-558.
-
(1983)
J. Appl. Crystallogr.
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
16
-
-
0034489092
-
Protein surface similarities: A survey of methods to describe and compare protein surfaces
-
Via, A.; Ferrè, F.; Brannetti, B.; Helmer-Citterich, M. Protein surface similarities: a survey of methods to describe and compare protein surfaces. Cell. Mol. Life Sci. 2000, 57, 1970-1977.
-
(2000)
Cell. Mol. Life Sci.
, vol.57
, pp. 1970-1977
-
-
Via, A.1
Ferrè, F.2
Brannetti, B.3
Helmer-Citterich, M.4
-
17
-
-
0027976930
-
Molecular surface representations by sparse critical points
-
Lin, S. L.; Nussinov, R.; Fischer, D.; Wolfson, H. J. Molecular surface representations by sparse critical points. Proteins: Struct. Fund. Genet. 1994, 18, 94-101.
-
(1994)
Proteins: Struct. Fund. Genet.
, vol.18
, pp. 94-101
-
-
Lin, S.L.1
Nussinov, R.2
Fischer, D.3
Wolfson, H.J.4
-
18
-
-
0029025913
-
A geometry-based suite of molecular docking processes
-
Fischer, D.; Lin, S. L.; Wolfson, H. L.; Nussinov, R. A geometry-based suite of molecular docking processes. J. Mol. Biol. 1995, 248, 459-477.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 459-477
-
-
Fischer, D.1
Lin, S.L.2
Wolfson, H.L.3
Nussinov, R.4
-
19
-
-
0033980458
-
QSD quadratic shape descriptors. 2. Molecular docking using quadratic shape descriptors (QSDock)
-
Goldman, B. B.; Wipke, W. T. QSD quadratic shape descriptors. 2. Molecular docking using quadratic shape descriptors (QSDock). Proteins: Struct. Fund. Genet. 2000, 38, 79-94.
-
(2000)
Proteins: Struct. Fund. Genet.
, vol.38
, pp. 79-94
-
-
Goldman, B.B.1
Wipke, W.T.2
-
20
-
-
84986532964
-
Grid-search molecular accessible surface algorithm for solving the protein docking problem
-
Wang, H. Grid-search molecular accessible surface algorithm for solving the protein docking problem. J. Comput. Chem. 1991, 12, 746-750.
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 746-750
-
-
Wang, H.1
-
21
-
-
0026924836
-
Shape distributions of protein topography
-
Connolly, M. L. Shape distributions of protein topography. Biopolymers 1992, 32, 1215-1236.
-
(1992)
Biopolymers
, vol.32
, pp. 1215-1236
-
-
Connolly, M.L.1
-
22
-
-
0002974604
-
Molecular recognition: 3D surface structure comparison by gnomic projection
-
Chau, P. L.; Dean, P. M. Molecular recognition: 3D surface structure comparison by gnomic projection. J. Mol. Graphics 1987, 5, 97-100.
-
(1987)
J. Mol. Graphics
, vol.5
, pp. 97-100
-
-
Chau, P.L.1
Dean, P.M.2
-
23
-
-
0024734901
-
A rapid method for comparing and matching the spherical parameter surfaces of molecules and other irregular objects
-
Bladon, P. A rapid method for comparing and matching the spherical parameter surfaces of molecules and other irregular objects. J. Mol. Graphics 1989, 7, 130-137.
-
(1989)
J. Mol. Graphics
, vol.7
, pp. 130-137
-
-
Bladon, P.1
-
24
-
-
0027609413
-
Molecular surface comparison: Application to drug design
-
Blaney, F.; Flinn, P.; Phippen, R.; Wyatt, R. Molecular surface comparison: application to drug design. J. Mol. Graphics 1993, 11, 98-105.
-
(1993)
J. Mol. Graphics
, vol.11
, pp. 98-105
-
-
Blaney, F.1
Flinn, P.2
Phippen, R.3
Wyatt, R.4
-
25
-
-
0024028105
-
Description of molecular surface shape using Fourier descriptors
-
Leicester, S. E.; Finney, J. L.; Bywater, R. P. Description of molecular surface shape using Fourier descriptors. J. Mol. Graphics 1988, 6, 104-8, 100.
-
(1988)
J. Mol. Graphics
, vol.6
, pp. 104-108
-
-
Leicester, S.E.1
Finney, J.L.2
Bywater, R.P.3
-
26
-
-
0034193510
-
Protein docking using spherical polar Fourier correlations
-
Ritchie, D. W. A. Protein docking using spherical polar Fourier correlations. Proteins: Struct. Funct. Genet. 2000, 39, 178-194.
-
(2000)
Proteins: Struct. Funct. Genet.
, vol.39
, pp. 178-194
-
-
Ritchie, D.W.A.1
-
27
-
-
0033921932
-
A novel method of aligning molecules by local surface shape similarity
-
Cosgrove, D.; Bayada, D.; Johnson, A. A novel method of aligning molecules by local surface shape similarity. J. Comput.- Aided Mol. Des. 2000, 14, 573-591.
-
(2000)
J. Comput.- Aided Mol. Des.
, vol.14
, pp. 573-591
-
-
Cosgrove, D.1
Bayada, D.2
Johnson, A.3
-
28
-
-
0034182176
-
Quadratic shape descriptors. 1. Rapid superposition of dissimilar molecules using geometrically invariant surface descriptors
-
Goldman, B. B.; Wipke, W. T. Quadratic shape descriptors. 1. Rapid superposition of dissimilar molecules using geometrically invariant surface descriptors. J. Chem. Inf. Comput. Sci 2000, 40, 644-658.
-
(2000)
J. Chem. Inf. Comput. Sci
, vol.40
, pp. 644-658
-
-
Goldman, B.B.1
Wipke, W.T.2
-
29
-
-
0036722646
-
Pattern recognition strategies for molecular surfaces. I. Pattern generation using fuzzy set theory
-
Exner, T. E.; Keil, M.; Brickmann, J. Pattern recognition strategies for molecular surfaces. I. Pattern generation using fuzzy set theory. J. Comput. Chem. 2002, 23, 1176-1187.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 1176-1187
-
-
Exner, T.E.1
Keil, M.2
Brickmann, J.3
-
30
-
-
0027548454
-
A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists
-
Martin, Y. C.; Bures, M. G.; Danaher, E. A.; DeLazzer, J.; Lico, I.; Pavlik, P. A. A fast new approach to pharmacophore mapping and its application to dopaminergic and benzodiazepine agonists. J. Comput.-Aided Mol. Des. 1993, 7, 83-102.
-
(1993)
J. Comput.-aided Mol. Des.
, vol.7
, pp. 83-102
-
-
Martin, Y.C.1
Bures, M.G.2
Danaher, E.A.3
Delazzer, J.4
Lico, I.5
Pavlik, P.A.6
-
32
-
-
0035438402
-
How does consensus scoring work for virtual library screening? An idealized computer experiment
-
Wang, R.; Wang, S. How does consensus scoring work for virtual library screening? An idealized computer experiment. J. Chem. Inf. Comput. Sci 2001, 41, 1422.
-
(2001)
J. Chem. Inf. Comput. Sci
, vol.41
, pp. 1422
-
-
Wang, R.1
Wang, S.2
-
33
-
-
0033576680
-
Consensus scoring: A method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins
-
Charifson, P. S.; Corkery, J. J.; Murcko, M. A.; Walters, W. P. Consensus scoring: a method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins. J. Med. Chem. 1999, 42, 5100-5109.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 5100-5109
-
-
Charifson, P.S.1
Corkery, J.J.2
Murcko, M.A.3
Walters, W.P.4
-
34
-
-
0001908117
-
Interactive visualization of molecular scenarios with MOLCAD/SYBYL
-
Brickmann, J.; Goetze, T.;, Heiden, W.; Moeckel, G.; Reiling, S.; Vollhardt, H.; Zachmann, C. D. Interactive visualization of molecular scenarios with MOLCAD/SYBYL. Data Visualization Mol. Sci. 1995.
-
(1995)
Data Visualization Mol. Sci.
-
-
Brickmann, J.1
Goetze, T.2
Heiden, W.3
Moeckel, G.4
Reiling, S.5
Vollhardt, H.6
Zachmann, C.D.7
-
35
-
-
0347913202
-
-
Tripos Inc.: St. Louis, MO
-
SYBYL 6.9; Tripos Inc.: St. Louis, MO, 2003.
-
(2003)
SYBYL 6.9
-
-
-
36
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Mertz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Mertz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
37
-
-
0031183511
-
Time-efficient flexible superposition of medium-sized molecules
-
Lemmen, C.; Lengauer, T. Time-efficient flexible superposition of medium-sized molecules. J. Comput.-Aided Mol. Des. 1997, 11, 357-368.
-
(1997)
J. Comput.-aided Mol. Des.
, vol.11
, pp. 357-368
-
-
Lemmen, C.1
Lengauer, T.2
-
38
-
-
0032488013
-
FLEXS: A method for fast flexible ligand superposition
-
Lemmen, C.; Lengauer, T.; Klebe, G. FLEXS: a method for fast flexible ligand superposition. J. Med. Chem. 1998, 41, 4502.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 4502
-
-
Lemmen, C.1
Lengauer, T.2
Klebe, G.3
|