메뉴 건너뛰기




Volumn 81, Issue 3, 2005, Pages 682-690

Fluorescence properties of fluorescein, tetramethylrhodamine and texas red linked to a DMA aptamer

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FLUORESCEIN; OLIGONUCLEOTIDE; RHODAMINE; TETRAMETHYLRHODAMINE; TEXAS RED; XANTHENE DERIVATIVE;

EID: 17844387194     PISSN: 00318655     EISSN: None     Source Type: Journal    
DOI: 10.1562/2004-10-06-RA-339.1     Document Type: Conference Paper
Times cited : (72)

References (40)
  • 1
    • 26444469012 scopus 로고    scopus 로고
    • Spectral properties of the prototropic forms of fluorescein in aqueous solution
    • Klonis, N. and W. H. Sawyer (1996) Spectral properties of the prototropic forms of fluorescein in aqueous solution. J. Fluoresc. 6, 147-157.
    • (1996) J. Fluoresc. , vol.6 , pp. 147-157
    • Klonis, N.1    Sawyer, W.H.2
  • 2
    • 0032401007 scopus 로고    scopus 로고
    • Characterization of fluorescein-oligonucleotide conjugates and measurement of local electrostatic potential
    • Sjöback, R., J. Nygren and M. Kubista (1998) Characterization of fluorescein-oligonucleotide conjugates and measurement of local electrostatic potential. Biopolymers 46, 445-453.
    • (1998) Biopolymers , vol.46 , pp. 445-453
    • Sjöback, R.1    Nygren, J.2    Kubista, M.3
  • 3
    • 0036807748 scopus 로고    scopus 로고
    • a values for fluorescein using activity coefficient corrections
    • a values for fluorescein using activity coefficient corrections. Water SA 28, 395-402.
    • (2002) Water SA , vol.28 , pp. 395-402
    • Smith, S.A.1    Pretorius, W.A.2
  • 4
    • 0001433022 scopus 로고    scopus 로고
    • Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: Improved absolute standards for quantum yields
    • Magde, D., R. Wong and P. G. Seybold (2002) Fluorescence quantum yields and their relation to lifetimes of rhodamine 6G and fluorescein in nine solvents: improved absolute standards for quantum yields. Photochem. Photobiol. 75, 327-334.
    • (2002) Photochem. Photobiol. , vol.75 , pp. 327-334
    • Magde, D.1    Wong, R.2    Seybold, P.G.3
  • 5
    • 0000469474 scopus 로고    scopus 로고
    • Solvent dependence of the fluorescence lifetimes of xanthene dyes
    • Magde, D., G. E. Rojas and P. G. Seybold (1999) Solvent dependence of the fluorescence lifetimes of xanthene dyes. Photochem. Photobiol. 70, 737-744.
    • (1999) Photochem. Photobiol. , vol.70 , pp. 737-744
    • Magde, D.1    Rojas, G.E.2    Seybold, P.G.3
  • 6
    • 0029737547 scopus 로고    scopus 로고
    • Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5′ end of oligonucleotides: Multiple conformers of single-stranded and double-stranded dye-DNA complexes
    • Vámosi, G., C. Gohlke and R. M. Clegg (1996) Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5′ end of oligonucleotides: multiple conformers of single-stranded and double-stranded dye-DNA complexes. Biophys. J. 71, 972-994.
    • (1996) Biophys. J. , vol.71 , pp. 972-994
    • Vámosi, G.1    Gohlke, C.2    Clegg, R.M.3
  • 7
    • 0032539686 scopus 로고    scopus 로고
    • Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy
    • Eggeling, C., J. R. Fries, L. Brand, R. Günther and C. A. M. Seidel (1998) Monitoring conformational dynamics of a single molecule by selective fluorescence spectroscopy. Proc. Natl. Acad. Sci. USA 95, 1556-1561.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1556-1561
    • Eggeling, C.1    Fries, J.R.2    Brand, L.3    Günther, R.4    Seidel, C.A.M.5
  • 8
    • 0030928573 scopus 로고    scopus 로고
    • Conformational fluctuations in single DNA molecules
    • Wennmalm, S., L. Edman and R. Rigler (1997) Conformational fluctuations in single DNA molecules. Proc. Natl. Acad. Sci. USA 94, 10641-10646.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10641-10646
    • Wennmalm, S.1    Edman, L.2    Rigler, R.3
  • 9
    • 0029900789 scopus 로고    scopus 로고
    • Conformational transitions monitored for single-molecules in solution
    • Edman, L., Ü. Mets and R. Rigler (1996) Conformational transitions monitored for single-molecules in solution. Proc. Natl. Acad. Sci. USA 93, 6710-6715.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6710-6715
    • Edman, L.1    Mets, Ü.2    Rigler, R.3
  • 10
    • 0037333563 scopus 로고    scopus 로고
    • Sequence dependence of fluorescent quenching of chromophores covalently bonded to oligo-DNAs before and after duplex formation
    • Ohya, Y., K. Yabuki and T. Ouchi (2003) Sequence dependence of fluorescent quenching of chromophores covalently bonded to oligo-DNAs before and after duplex formation. Supramol. Chem. 15, 149-154.
    • (2003) Supramol. Chem. , vol.15 , pp. 149-154
    • Ohya, Y.1    Yabuki, K.2    Ouchi, T.3
  • 11
    • 0043234727 scopus 로고    scopus 로고
    • Photoinduced electron transfer between fluorescent dyes and guanosine residues in DNA-hairpins
    • Heinlein, T., J.-P. Knemeyer, O. Piestert and M. Sauer (2003) Photoinduced electron transfer between fluorescent dyes and guanosine residues in DNA-hairpins. J. Phys. Chem. B 107, 7957-7964.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 7957-7964
    • Heinlein, T.1    Knemeyer, J.-P.2    Piestert, O.3    Sauer, M.4
  • 12
    • 0035140955 scopus 로고    scopus 로고
    • Fluorescence-quenching phenomenon by photoinduced electron transfer between a fluorescent dye and a nucleotide base
    • Torimura, M., S. Kurata, K. Yamada, T. Yokomaku, Y. Kamagata, T. Kanagawa and R. Kurane (2001) Fluorescence-quenching phenomenon by photoinduced electron transfer between a fluorescent dye and a nucleotide base. Anal. Sci. 17, 155-160.
    • (2001) Anal. Sci. , vol.17 , pp. 155-160
    • Torimura, M.1    Kurata, S.2    Yamada, K.3    Yokomaku, T.4    Kamagata, Y.5    Kanagawa, T.6    Kurane, R.7
  • 13
    • 0031116509 scopus 로고    scopus 로고
    • Fast interactions between Rh6G and dGTP in water studied by fluorescence correlation spectroscopy
    • Widengren, J., J. Dapprich and R. Rigler (1997) Fast interactions between Rh6G and dGTP in water studied by fluorescence correlation spectroscopy. Chem. Phys. 216, 417-426.
    • (1997) Chem. Phys. , vol.216 , pp. 417-426
    • Widengren, J.1    Dapprich, J.2    Rigler, R.3
  • 14
    • 0036567249 scopus 로고    scopus 로고
    • Effect of primary and secondary structure of oligodeoxyriboncleotides on the fluorescent properties of cojugated dyes
    • Nazarenko, I., R. Pires, B. Lowe, M. Obaidy and A. Rashtchian (2002) Effect of primary and secondary structure of oligodeoxyriboncleotides on the fluorescent properties of cojugated dyes. Nucleic Acids Res. 30, 2089-2195.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2089-2195
    • Nazarenko, I.1    Pires, R.2    Lowe, B.3    Obaidy, M.4    Rashtchian, A.5
  • 15
    • 0030969442 scopus 로고    scopus 로고
    • Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates
    • Walter, N. G. and J. M. Burke (1997) Real-time monitoring of hairpin ribozyme kinetics through base-specific quenching of fluorescein-labeled substrates. RNA 3, 392-404.
    • (1997) RNA , vol.3 , pp. 392-404
    • Walter, N.G.1    Burke, J.M.2
  • 16
    • 0034663372 scopus 로고    scopus 로고
    • Probes for detection of specific DNA sequences at the single-molecule level
    • Knemeyer, J.-P., N. Marmé and M. Sauer (2000) Probes for detection of specific DNA sequences at the single-molecule level. Anal. Chem. 72, 3717-3724.
    • (2000) Anal. Chem. , vol.72 , pp. 3717-3724
    • Knemeyer, J.-P.1    Marmé, N.2    Sauer, M.3
  • 17
    • 0344936650 scopus 로고    scopus 로고
    • The helix-coil transition of DNA duplexes and hairpins observed by multiple fluorescence parameters
    • Vámosi, G. and R. M. Clegg (1998) The helix-coil transition of DNA duplexes and hairpins observed by multiple fluorescence parameters. Biochemistry 37, 14300-14316.
    • (1998) Biochemistry , vol.37 , pp. 14300-14316
    • Vámosi, G.1    Clegg, R.M.2
  • 20
    • 0029943440 scopus 로고    scopus 로고
    • High-affinity oligonucleotide ligands to human IgE inhibit binding to Fcε receptor I
    • Wiegand, T. W., P. B. Williams, S. C. Dreskin, M. Jouvin, J. Kinet and D. Tasset (1996) High-affinity oligonucleotide ligands to human IgE inhibit binding to Fcε receptor I. J. Immunol. 157, 221-230.
    • (1996) J. Immunol. , vol.157 , pp. 221-230
    • Wiegand, T.W.1    Williams, P.B.2    Dreskin, S.C.3    Jouvin, M.4    Kinet, J.5    Tasset, D.6
  • 22
    • 17844409052 scopus 로고    scopus 로고
    • Orientational dynamics and dye-DNA interactions in a dye-labeled DNA aptamer
    • Unruh, J. R., G. Gokulrangan, G. H. Lushington, C. K. Johnson and G. S. Wilson (2005) Orientational dynamics and dye-DNA interactions in a dye-labeled DNA aptamer. Biophys. J. 88, 3455-3465.
    • (2005) Biophys. J. , vol.88 , pp. 3455-3465
    • Unruh, J.R.1    Gokulrangan, G.2    Lushington, G.H.3    Johnson, C.K.4    Wilson, G.S.5
  • 23
    • 0010104094 scopus 로고    scopus 로고
    • PhotochemCAD: A computer-aided design and research tool in photochemistry
    • Du, H., R.-C. A. Fuh, J. Li, A. Corkan and J. S. Lindsey (1998) PhotochemCAD: a computer-aided design and research tool in photochemistry. Photochem. Photobiol. 68, 141-142.
    • (1998) Photochem. Photobiol. , vol.68 , pp. 141-142
    • Du, H.1    Fuh, R.-C.A.2    Li, J.3    Corkan, A.4    Lindsey, J.S.5
  • 24
    • 0038808798 scopus 로고    scopus 로고
    • Tyrosyl fluorescence decays and rotational dynamics in tyrosine monomers and in dipeptides
    • Harms, G. S., S. W. Pauls, J. F. Hedstrom and C. K. Johnson (1997) Tyrosyl fluorescence decays and rotational dynamics in tyrosine monomers and in dipeptides. J. Fluoresc. 7, 273-281.
    • (1997) J. Fluoresc. , vol.7 , pp. 273-281
    • Harms, G.S.1    Pauls, S.W.2    Hedstrom, J.F.3    Johnson, C.K.4
  • 26
    • 0001464493 scopus 로고
    • Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method
    • Livesey, A. K. and J.-C. Brochon (1987) Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method. Biophys. J. 52, 693-706.
    • (1987) Biophys. J. , vol.52 , pp. 693-706
    • Livesey, A.K.1    Brochon, J.-C.2
  • 27
    • 0030087307 scopus 로고    scopus 로고
    • Analysis of fluorescence decay by the maximum entropy method: Influence of noise and analysis parameters on the width of the distribution of lifetimes
    • Swaminathan, R. and N. Periasamy (1996) Analysis of fluorescence decay by the maximum entropy method: influence of noise and analysis parameters on the width of the distribution of lifetimes. Proc. Indian Acad. Sci. Chem. Sci. 108, 39-19.
    • (1996) Proc. Indian Acad. Sci. Chem. Sci. , vol.108 , pp. 39-119
    • Swaminathan, R.1    Periasamy, N.2
  • 28
    • 0000431384 scopus 로고
    • Maximum entropy image reconstruction: General algorithm
    • Skilling, J. and R. K. Bryan (1984) Maximum entropy image reconstruction: general algorithm. Mon. Not. R. Ast. Soc. 211, 111-124.
    • (1984) Mon. Not. R. Ast. Soc. , vol.211 , pp. 111-124
    • Skilling, J.1    Bryan, R.K.2
  • 30
    • 0026439297 scopus 로고
    • Deuterium isotope effects in constrained tryptophan derivatives: Implications for tryptophan photophysics
    • McMahon, L. P., W. J. Colucci, M. L. McLaughlin and M. D. Barkley (1992) Deuterium isotope effects in constrained tryptophan derivatives: implications for tryptophan photophysics. J. Am. Chem. Soc. 114, 8442-8448.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 8442-8448
    • McMahon, L.P.1    Colucci, W.J.2    McLaughlin, M.L.3    Barkley, M.D.4
  • 32
    • 0031060794 scopus 로고    scopus 로고
    • Temperature and quenching studies of fluorescence polarization detection of DNA hybridization
    • Kumke, M. U., L. Shu, L. B. McGown, G. T. Walker, J. B. Pitner and C. P. Linn (1997) Temperature and quenching studies of fluorescence polarization detection of DNA hybridization. Anal. Chem. 69, 500-506.
    • (1997) Anal. Chem. , vol.69 , pp. 500-506
    • Kumke, M.U.1    Shu, L.2    McGown, L.B.3    Walker, G.T.4    Pitner, J.B.5    Linn, C.P.6
  • 33
    • 49549141367 scopus 로고
    • Hydrogen bond effects on radiationless electronic transitions in xanthene dyes
    • Martin, M. M. (1975) Hydrogen bond effects on radiationless electronic transitions in xanthene dyes. Chem. Phys. Lett. 35, 105-111.
    • (1975) Chem. Phys. Lett. , vol.35 , pp. 105-111
    • Martin, M.M.1
  • 34
    • 0038037163 scopus 로고    scopus 로고
    • Rational design principle for modulating fluorescence properties of fluorescein-based probes by photoinduced electron transfer
    • Miura, T., Y. Urano, K. Tanaka, T. Nagano, K. Ohkubo and S. Fukuzumi (2003) Rational design principle for modulating fluorescence properties of fluorescein-based probes by photoinduced electron transfer. J. Am. Chem. Soc. 125, 8666-8671.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 8666-8671
    • Miura, T.1    Urano, Y.2    Tanaka, K.3    Nagano, T.4    Ohkubo, K.5    Fukuzumi, S.6
  • 35
    • 0038604454 scopus 로고    scopus 로고
    • The thiourea group modulates the fluorescence emission decay of fluorescein-labeled molecules
    • Klonis, N. and W. H. Sawyer (2003) The thiourea group modulates the fluorescence emission decay of fluorescein-labeled molecules. Photochem. Photobiol. 77, 502-509.
    • (2003) Photochem. Photobiol. , vol.77 , pp. 502-509
    • Klonis, N.1    Sawyer, W.H.2
  • 36
    • 33748595282 scopus 로고    scopus 로고
    • Nucleobase-specific quenching of fluorescent dyes. 1. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies
    • Seidel, C. A. M., A. Schulz and M. Sauer (1996) Nucleobase-specific quenching of fluorescent dyes. 1. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies. J. Phys. Chem. 100, 5541-5553.
    • (1996) J. Phys. Chem. , vol.100 , pp. 5541-5553
    • Seidel, C.A.M.1    Schulz, A.2    Sauer, M.3
  • 37
    • 0002301498 scopus 로고
    • Fundamental concepts of photoinduced electron transfer
    • Kavarnos, G. J. (1990) Fundamental concepts of photoinduced electron transfer. Top. Curr. Chem. 156, 21-58.
    • (1990) Top. Curr. Chem. , vol.156 , pp. 21-58
    • Kavarnos, G.J.1
  • 38
    • 84918669584 scopus 로고
    • Photoinduced electron transfer in solution: Exciplex and radical ion pair formation free enthalpies and their solvent dependence
    • Weller, A. (1982) Photoinduced electron transfer in solution: exciplex and radical ion pair formation free enthalpies and their solvent dependence. Z. Phys. Chem. N. F. 133, 93-98.
    • (1982) Z. Phys. Chem. N. F. , vol.133 , pp. 93-98
    • Weller, A.1
  • 39
    • 84991138979 scopus 로고
    • Kinetics of fluorescence quenching by electron and H-atom transfer
    • Rehm, D. and A. Weller (1970) Kinetics of fluorescence quenching by electron and H-atom transfer. Isr. J. Chem. 8, 259-271.
    • (1970) Isr. J. Chem. , vol.8 , pp. 259-271
    • Rehm, D.1    Weller, A.2
  • 40
    • 0036180593 scopus 로고    scopus 로고
    • Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: A comparative study of ensemble and single-molecule data
    • Dietrich, A., V. Buschmann, C. Müller and M. Sauer (2002) Fluorescence resonance energy transfer (FRET) and competing processes in donor-acceptor substituted DNA strands: a comparative study of ensemble and single-molecule data. Rev. Mol. Biotechnol. 82, 211-231.
    • (2002) Rev. Mol. Biotechnol. , vol.82 , pp. 211-231
    • Dietrich, A.1    Buschmann, V.2    Müller, C.3    Sauer, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.