-
1
-
-
0037126019
-
A simple method for probing the mechanical unfolding pathway of proteins in detail
-
Best, R. B., S. B. Fowler, J. L. Toca-Herrera, and J. Clarke. 2002. A simple method for probing the mechanical unfolding pathway of proteins in detail. Proc. Natl. Acad. Sci. USA. 99:12143-12148.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12143-12148
-
-
Best, R.B.1
Fowler, S.B.2
Toca-Herrera, J.L.3
Clarke, J.4
-
2
-
-
0034081255
-
Mechanical unfolding of a β-hairpin using molecular dynamics
-
Bryant, Z., V. S. Pande, and D. S. Rokhsar. 2000. Mechanical unfolding of a β-hairpin using molecular dynamics. Biophys. J. 78:584-589.
-
(2000)
Biophys. J.
, vol.78
, pp. 584-589
-
-
Bryant, Z.1
Pande, V.S.2
Rokhsar, D.S.3
-
3
-
-
0035826241
-
Supercooled liquids and the glass transition
-
Debenedetti, P. G., and F. H. Stillinger. 2001. Supercooled liquids and the glass transition. Nature. 410:259-267.
-
(2001)
Nature
, vol.410
, pp. 259-267
-
-
Debenedetti, P.G.1
Stillinger, F.H.2
-
4
-
-
0032988663
-
Strength of a weak bond connecting flexible polymer chains
-
Evans, E., and K. Ritchie. 1999. Strength of a weak bond connecting flexible polymer chains. Biophys. J. 76:2439-2447.
-
(1999)
Biophys. J.
, vol.76
, pp. 2439-2447
-
-
Evans, E.1
Ritchie, K.2
-
5
-
-
0036389817
-
Mechanical unfolding of a titin Ig domain: Structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering
-
Fowler, S. B., R. B. Best, J. L. Toca Herrera, T. J. Rutherford, A. Steward, E. Paci, M. Karplus, and J. Clarke. 2002. Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering. J. Mol. Biol. 322:841-849.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 841-849
-
-
Fowler, S.B.1
Best, R.B.2
Toca Herrera, J.L.3
Rutherford, T.J.4
Steward, A.5
Paci, E.6
Karplus, M.7
Clarke, J.8
-
6
-
-
0035509667
-
Energy landscape view of fracture and avalanches in disordered materials
-
Gagnon, G., J. Patton, and D. J. Lacks. 2001. Energy landscape view of fracture and avalanches in disordered materials. Phys. Rev. E. 64: 051508.
-
(2001)
Phys. Rev. E
, vol.64
, pp. 051508
-
-
Gagnon, G.1
Patton, J.2
Lacks, D.J.3
-
7
-
-
0036924186
-
Steered molecular dynamics studies of titin II domain unfolding
-
Gao, M., M. Wilmanns, and K. Schulten. 2002. Steered molecular dynamics studies of titin II domain unfolding. Biophys. J. 83:3435-3445.
-
(2002)
Biophys. J.
, vol.83
, pp. 3435-3445
-
-
Gao, M.1
Wilmanns, M.2
Schulten, K.3
-
8
-
-
36449009348
-
Folding kinetics of proteins: A model study
-
Guo, Z., D. Thirumalai, and J. D. Honeycutt. 1992. Folding kinetics of proteins: a model study. J. Chem. Phys. 97:525-535.
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 525-535
-
-
Guo, Z.1
Thirumalai, D.2
Honeycutt, J.D.3
-
9
-
-
0026643094
-
The nature of folded states of globular-proteins
-
Honeycutt, J. D., and D. Thirumalai. 1992. The nature of folded states of globular-proteins. Biopolymers. 32:695-709.
-
(1992)
Biopolymers
, vol.32
, pp. 695-709
-
-
Honeycutt, J.D.1
Thirumalai, D.2
-
10
-
-
0031002460
-
Folding-unfolding transitions in single titin molecules characterized with laser tweezers
-
Kellermayer, M. S. Z., S. B. Smith, H. L. Granzier, and C. Bustamante. 1997. Folding-unfolding transitions in single titin molecules characterized with laser tweezers. Science. 276:1112-1116.
-
(1997)
Science
, vol.276
, pp. 1112-1116
-
-
Kellermayer, M.S.Z.1
Smith, S.B.2
Granzier, H.L.3
Bustamante, C.4
-
11
-
-
0344236093
-
Conformational space annealing and an off-lattice frustrated model protein
-
Kim, S.-Y., S. J. Lee, and J. Lee. 2003. Conformational space annealing and an off-lattice frustrated model protein. J. Chem. Phys. 119:10274-10279.
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 10274-10279
-
-
Kim, S.-Y.1
Lee, S.J.2
Lee, J.3
-
12
-
-
0033060621
-
Stretching single-domain proteins: Phase diagram and kinetics of force-induced unfolding
-
Klimov, D. K.; and D. Thirumalai. 1999. Stretching single-domain proteins: phase diagram and kinetics of force-induced unfolding. Proc. Natl. Acad. Sci. USA. 96:6166-6170.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6166-6170
-
-
Klimov, D.K.1
Thirumalai, D.2
-
13
-
-
0035913518
-
Lattice model studies of force-induced unfolding of proteins
-
Klimov, D. K., and D. Thirumalai. 2001. Lattice model studies of force-induced unfolding of proteins. J. Phys. Chem. B. 105:6648-6654.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6648-6654
-
-
Klimov, D.K.1
Thirumalai, D.2
-
14
-
-
0034691149
-
Native topology determines force-induced unfolding pathways in globular proteins
-
Klimov, D. K., and D. Thirumalai. 2000. Native topology determines force-induced unfolding pathways in globular proteins. Proc. Natl. Acad. Sci. USA. 97:7254-7259.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7254-7259
-
-
Klimov, D.K.1
Thirumalai, D.2
-
15
-
-
0033573912
-
Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch
-
Krammer, A., H. Lu, B. Isralewitz, K. Schulten, and V. Vogel. 1999. Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch. Proc. Natl. Acad. Sci. USA. 96:1351-1356.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 1351-1356
-
-
Krammer, A.1
Lu, H.2
Isralewitz, B.3
Schulten, K.4
Vogel, V.5
-
16
-
-
4244157971
-
Localized mechanical instabilities and structural transformations in silica glass under high pressure
-
Lacks, D. J. 1998. Localized mechanical instabilities and structural transformations in silica glass under high pressure. Phys. Rev. Lett. 80:5385-5388.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 5385-5388
-
-
Lacks, D.J.1
-
17
-
-
0000442348
-
First-order amorphous-amorphous transformation in silica
-
Lacks, D. J. 2000. First-order amorphous-amorphous transformation in silica. Phys. Rev. Lett. 84:4629-4632.
-
(2000)
Phys. Rev. Lett.
, vol.84
, pp. 4629-4632
-
-
Lacks, D.J.1
-
18
-
-
33846487893
-
Energy landscapes and the non-Newtonian viscosity of liquids and glasses
-
Lacks, D. J. 2001. Energy landscapes and the non-Newtonian viscosity of liquids and glasses. Phys. Rev. Lett. 87:225502.
-
(2001)
Phys. Rev. Lett.
, vol.87
, pp. 225502
-
-
Lacks, D.J.1
-
19
-
-
0002304341
-
Global optimization: Quantum thermal annealing with path integral Monte Carlo
-
Lee, Y.-H., and B. J. Berne. 2000. Global optimization: quantum thermal annealing with path integral Monte Carlo. J. Phys. Chem. A. 104:86-95.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 86-95
-
-
Lee, Y.-H.1
Berne, B.J.2
-
20
-
-
18344367645
-
Mechanical unfolding and refolding of proteins: An off-lattice model study
-
Li, F.-Y., J.-M. Yuan, and C.-Y. Mou. 2001. Mechanical unfolding and refolding of proteins: an off-lattice model study. Phys. Rev. E. 63: 021905.
-
(2001)
Phys. Rev. E
, vol.63
, pp. 021905
-
-
Li, F.-Y.1
Yuan, J.-M.2
Mou, C.-Y.3
-
21
-
-
0345329950
-
Theoretical studies of the mechanical unfolding of the muscle protein titin: Bridging the timescale gap between simulation and experiment
-
Li, P.-C., and D. E. Makarov. 2003. Theoretical studies of the mechanical unfolding of the muscle protein titin: bridging the timescale gap between simulation and experiment. J. Chem. Phys. 119:9260-9268.
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 9260-9268
-
-
Li, P.-C.1
Makarov, D.E.2
-
22
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Lu, H., B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten. 1998. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys. J. 75:662-671.
-
(1998)
Biophys. J.
, vol.75
, pp. 662-671
-
-
Lu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
23
-
-
0033917135
-
The key event in force-induced unfolding of titin's immunoglobulin domains
-
Lu, H., and K. Schulten. 2000. The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys. J. 79:51-65.
-
(2000)
Biophys. J.
, vol.79
, pp. 51-65
-
-
Lu, H.1
Schulten, K.2
-
24
-
-
0001411467
-
Molecular-level mechanical instabilities and enhanced self-diffusion in flowing liquids
-
Malandro, D. L., and D. J. Lacks. 1998. Molecular-level mechanical instabilities and enhanced self-diffusion in flowing liquids. Phys. Rev. Lett. 81:5576-5579.
-
(1998)
Phys. Rev. Lett.
, vol.81
, pp. 5576-5579
-
-
Malandro, D.L.1
Lacks, D.J.2
-
25
-
-
0032568599
-
Folding funnels and frustration in off-lattice minimalist protein landscapes
-
Nymeyer, H., A. E. Garcia, and J. N. Onuchic. 2002. Folding funnels and frustration in off-lattice minimalist protein landscapes. Proc. Natl. Acad. Sci. USA. 95:5921-5928.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5921-5928
-
-
Nymeyer, H.1
Garcia, A.E.2
Onuchic, J.N.3
-
27
-
-
0033531973
-
Forced unfolding of fibronectin type 3 modules: An analysis by biased molecular dynamics simulations
-
Paci, E., and M. Karplus. 1999. Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations. J. Mol. Biol. 288:441-459.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 441-459
-
-
Paci, E.1
Karplus, M.2
-
28
-
-
0034612284
-
Unfolding proteins by external forces and temperature: The importance of topology and energetics
-
Paci, E., and M. Karplus. 2000. Unfolding proteins by external forces and temperature: the importance of topology and energetics. Proc. Natl. Acad. Sci. USA. 97:6521-6526.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6521-6526
-
-
Paci, E.1
Karplus, M.2
-
29
-
-
0003474751
-
-
Cambridge University Press, New York
-
Press, W. H., S. A. Teukolsky, W. T. Vetterling, and B. P. Flannery. 1992. Numerical Recipes in FORTRAN, 2nd Ed. Cambridge University Press, New York.
-
(1992)
Numerical Recipes in FORTRAN, 2nd Ed.
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
30
-
-
1942535023
-
Molecular simulation of the reversible mechanical unfolding of proteins
-
Rathore, H., Q. Yan, and J. J. de Pablo. 2004. Molecular simulation of the reversible mechanical unfolding of proteins. J. Chem. Phys. 120:5781-5788.
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 5781-5788
-
-
Rathore, H.1
Yan, Q.2
De Pablo, J.J.3
-
31
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief, M., M. Gautel, F. Oesterhelt, J. M. Fernandez, and H. E. Gaub. 1997. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science. 276:1109-1112.
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterhelt, F.3
Fernandez, J.M.4
Gaub, H.E.5
-
33
-
-
0042091834
-
Packing structures and transitions in liquids and solids
-
Stillinger, F. H., and T. A. Weber. 1984. Packing structures and transitions in liquids and solids. Science. 225:983-989.
-
(1984)
Science
, vol.225
, pp. 983-989
-
-
Stillinger, F.H.1
Weber, T.A.2
-
34
-
-
0031006659
-
Elasticity and unfolding of single molecules of the giant muscle protein titin
-
Tskhovrebova, L., J. Trinick, J. A. Sleep, and R. M. Simmons. 1997. Elasticity and unfolding of single molecules of the giant muscle protein titin. Nature. 387:308-312.
-
(1997)
Nature
, vol.387
, pp. 308-312
-
-
Tskhovrebova, L.1
Trinick, J.2
Sleep, J.A.3
Simmons, R.M.4
|