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Volumn 119, Issue 17, 2003, Pages 9260-9268

Theoretical studies of the mechanical unfolding of the muscle protein titin: Bridging the time-scale gap between simulation and experiment

(2) Li, Pai Chi a Makarov, Dmitrii E a

a The University of Texas at Austin (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; ATOMIC FORCE MICROSCOPY; COMPUTER SIMULATION; DIFFUSION; FREE ENERGY; FRICTION; INTEGRAL EQUATIONS; MONTE CARLO METHODS; MUSCLE; PROTEINS; REACTION KINETICS;

DENATURATION; THERMAL FLUCTUATIONS;

MOLECULAR DYNAMICS;

EID: 0345329950 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.1615233 Document Type: Article

Times cited : (81)

References (65)

1
- 0037090781
- R. Lavery, A. Lebrun, J.-F. Allemand, D. Bensimon, and V. Croquette, J. Phys.: Condens. Matter 14, R383 (2002).
- (2002) J. Phys.: Condens. Matter , vol.14
- Lavery, R.¹ Lebrun, A.² Allemand, J.-F.³ Bensimon, D.⁴ Croquette, V.⁵

2
- 0038206538
- N. Becker, E. Oroudjev, S. Mutz, J. P. Cleveland, P. K. Hansma, C. Y. Hayashi, D. E. Makarov, and H. G. Hansma, Nature Materials 2, 278 (2003).
- (2003) Nature Materials , vol.2 , pp. 278
- Becker, N.¹ Oroudjev, E.² Mutz, S.³ Cleveland, J.P.⁴ Hansma, P.K.⁵ Hayashi, C.Y.⁶ Makarov, D.E.⁷ Hansma, H.G.⁸

3
- 0346668262
- R. B. Best, D. J. Brockwell, J. L. Toca-Herrera, A. W. Blake, D. A. Smith, S. E. Radford, and J. Clarke, Anal. Chim. Acta 479, 87 (2003).
- (2003) Anal. Chim. Acta , vol.479 , pp. 87
- Best, R.B.¹ Brockwell, D.J.² Toca-Herrera, J.L.³ Blake, A.W.⁴ Smith, D.A.⁵ Radford, S.E.⁶ Clarke, J.⁷

4
- 0034804341
- R. B. Best, B. Li, A. Steward, V. Daggett, and J. Clarke, Biophys. J. 81, 2344 (2001).
- (2001) Biophys. J. , vol.81 , pp. 2344
- Best, R.B.¹ Li, B.² Steward, A.³ Daggett, V.⁴ Clarke, J.⁵

5
- 0036280490
- D. J. Brockwell, G. S. Beddard, J. Clarkson, R. C. Zinober, A. Blake, J. Trinick, P. D. Olmsted, D. A. Smith, and S. E. Radford, Biophys. J. 83, 458 (2002).
- (2002) Biophys. J. , vol.83 , pp. 458
- Brockwell, D.J.¹ Beddard, G.S.² Clarkson, J.³ Zinober, R.C.⁴ Blake, A.⁵ Trinick, J.⁶ Olmsted, P.D.⁷ Smith, D.A.⁸ Radford, S.E.⁹

6
- 0030962748
- H. P. Erickson, Science 276, 1090 (1997).
- (1997) Science , vol.276 , pp. 1090
- Erickson, H.P.¹

7
- 0033817704
- T. E. Fisher, P. E. Marsalek, and J. M. Fernandez, Nat. Struct. Biol. 7, 719 (2000).
- (2000) Nat. Struct. Biol. , vol.7 , pp. 719
- Fisher, T.E.¹ Marsalek, P.E.² Fernandez, J.M.³

8
- 0033214502
- T. E. Fisher, A. F. Oberhauser, M. C. Vezquez, P. E. Marsalek, and J. Fernandez, Trends Biochem. Sci. 24, 379 (1999).
- (1999) Trends Biochem. Sci. , vol.24 , pp. 379
- Fisher, T.E.¹ Oberhauser, A.F.² Vezquez, M.C.³ Marsalek, P.E.⁴ Fernandez, J.⁵

9
- 0032177654
- H. G. Hansma and L. Pietrasanta, Curr. Opin. Chem. Biol. 2, 579 (1998).
- (1998) Curr. Opin. Chem. Biol. , vol.2 , pp. 579
- Hansma, H.G.¹ Pietrasanta, L.²

10
- 0033828322
- H. G. Hansma, L. I. Pietrasanta, I. D. Auerbach, C. Sorenson, R. Golan, and P. A. Holden, J. Biomater. Sci., Polym. Ed. 11, 675 (2000).
- (2000) J. Biomater. Sci., Polym. Ed. , vol.11 , pp. 675
- Hansma, H.G.¹ Pietrasanta, L.I.² Auerbach, I.D.³ Sorenson, C.⁴ Golan, R.⁵ Holden, P.A.⁶

11
- 0031002460
- M. S. Z. Kellermayer, S. B. Smith, H. L. Granzier, and C. Bustamante, Science 276, 1112 (1997).
- (1997) Science , vol.276 , pp. 1112
- Kellermayer, M.S.Z.¹ Smith, S.B.² Granzier, H.L.³ Bustamante, C.⁴

12
- 0033669185
- H. Li, M. Carrion-Vazquez, A. F. Oberhauser, P. E. Marsalek, and J. M. Fernandez, Nat. Struct. Biol. 7, 1117 (2000).
- (2000) Nat. Struct. Biol. , vol.7 , pp. 1117
- Li, H.¹ Carrion-Vazquez, M.² Oberhauser, A.F.³ Marsalek, P.E.⁴ Fernandez, J.M.⁵

13
- 0034612346
- H. Li, A. F. Oberhauser, S. B. Fowler, J. Clarke, and J. M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. 97, 6527 (2000).
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 6527
- Li, H.¹ Oberhauser, A.F.² Fowler, S.B.³ Clarke, J.⁴ Fernandez, J.M.⁵

14
- 0033523904
- P. E. Marsalek, H. Lu, H. Li, M. Carrion-Vazquez, A. F. Oberhauser, K. Schulten, and J. Fernandez, Nature (London) 402, 100 (1999).
- (1999) Nature (London) , vol.402 , pp. 100
- Marsalek, P.E.¹ Lu, H.² Li, H.³ Carrion-Vazquez, M.⁴ Oberhauser, A.F.⁵ Schulten, K.⁶ Fernandez, J.⁷

15
- 0036305982
- A. F. Oberhauser, C. Badilla-Fernandez, M. Carrion-Vazquez, and J. M. Fernandez, J. Mol. Biol. 319, 433 (2002).
- (2002) J. Mol. Biol. , vol.319 , pp. 433
- Oberhauser, A.F.¹ Badilla-Fernandez, C.² Carrion-Vazquez, M.³ Fernandez, J.M.⁴

16
- 0035895290
- A. F. Oberhauser, P. K. Hansma, M. Carrion-Vazquez, and J. M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. 98, 468 (2001).
- (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 468
- Oberhauser, A.F.¹ Hansma, P.K.² Carrion-Vazquez, M.³ Fernandez, J.M.⁴

17
- 0032516205
- A. F. Oberhauser, P. E. Marszalek, H. Erickson, and J. M. Fernandez, Nature (London) 393, 181 (1998).
- (1998) Nature (London) , vol.393 , pp. 181
- Oberhauser, A.F.¹ Marszalek, P.E.² Erickson, H.³ Fernandez, J.M.⁴

18
- 0033534243
- M. E. Pennisi, Science 283, 168 (1999).
- (1999) Science , vol.283 , pp. 168
- Pennisi, M.E.¹

19
- 11544281834
- M. Rief, J. M. Fernandez, and H. E. Gaub, Phys. Rev. Lett. 81, 4764 (1998).
- (1998) Phys. Rev. Lett. , vol.81 , pp. 4764
- Rief, M.¹ Fernandez, J.M.² Gaub, H.E.³

20
- 0031011695
- M. Rief, M. Gautel, F. Oesterhelt, J. M. Fernandez, and H. E. Gaub, Science 276, 1109 (1997).
- (1997) Science , vol.276 , pp. 1109
- Rief, M.¹ Gautel, M.² Oesterhelt, F.³ Fernandez, J.M.⁴ Gaub, H.E.⁵

21
- 0033582763
- M. Rief, J. Pascual, M. Saraste, and H. E. Gaub, J. Mol. Biol. 286, 553 (1999).
- (1999) J. Mol. Biol. , vol.286 , pp. 553
- Rief, M.¹ Pascual, J.² Saraste, M.³ Gaub, H.E.⁴

22
- 0344052669
- B. L. Smith, T. E. Schaffer, M. Viani, J. B. Thompson, N. A. Frederick, J. Kindt, A. Belcher, G. D. Stucky, D. E. Morse, and P. K. Hansma, Nature (London) 399, 761 (1999).
- (1999) Nature (London) , vol.399 , pp. 761
- Smith, B.L.¹ Schaffer, T.E.² Viani, M.³ Thompson, J.B.⁴ Frederick, N.A.⁵ Kindt, J.⁶ Belcher, A.⁷ Stucky, G.D.⁸ Morse, D.E.⁹ Hansma, P.K.¹⁰

23
- 0036385794
- J. B. Thompson, H. G. Hansma, P. K. Hansma, and K. W. Plaxco, J. Mol. Biol. 322, 645 (2002).
- (2002) J. Mol. Biol. , vol.322 , pp. 645
- Thompson, J.B.¹ Hansma, H.G.² Hansma, P.K.³ Plaxco, K.W.⁴

24
- 0035856905
- J. B. Thompson, J. H. Kindt, B. Drake, H. G. Hansma, D. E. Morse, and P. K. Hansma, Nature (London) 414, 773 (2001).
- (2001) Nature (London) , vol.414 , pp. 773
- Thompson, J.B.¹ Kindt, J.H.² Drake, B.³ Hansma, H.G.⁴ Morse, D.E.⁵ Hansma, P.K.⁶

25
- 0031006659
- L. Tskhovrebova, J. A. Trinic, J. A. Sleep, and R. M. Simmons, Nature (London) 387, 308 (1997).
- (1997) Nature (London) , vol.387 , pp. 308
- Tskhovrebova, L.¹ Trinic, J.A.² Sleep, J.A.³ Simmons, R.M.⁴

26
- 6544282165
- M. B. Viani, T. E. Schaffer, G. T. Paloczi et al., Rev. Sci. Instrum. 70, 4300 (1999).
- (1999) Rev. Sci. Instrum. , vol.70 , pp. 4300
- Viani, M.B.¹ Schaffer, T.E.² Paloczi, G.T.³

27
- 0001703652
- M. B. Viani, T. E. Schaffer, A. Chand, M. Rief, H. E. Gaub, and P. K. Hansma, J. Appl. Phys. 86, 2258 (1999).
- (1999) J. Appl. Phys. , vol.86 , pp. 2258
- Viani, M.B.¹ Schaffer, T.E.² Chand, A.³ Rief, M.⁴ Gaub, H.E.⁵ Hansma, P.K.⁶

28
- 0037311547
- X. Zhuang and M. Rief, Curr. Opin. Struct. Biol. 13, 88 (2003).
- (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 88
- Zhuang, X.¹ Rief, M.²

29
- 0036891724
- R. C. Zinober, D. J. Brockwell, G. S. Beddard, A. W. Blake, P. D. Olmsted, S. E. Radford, and D. A. Smith, Protein Sci. 11, 2759 (2002).
- (2002) Protein Sci. , vol.11 , pp. 2759
- Zinober, R.C.¹ Brockwell, D.J.² Beddard, G.S.³ Blake, A.W.⁴ Olmsted, P.D.⁵ Radford, S.E.⁶ Smith, D.A.⁷

30
- 0034081255
- Z. Bryant, V. S. Pande, and D. S. Rokhsar, Biophys. J. 78, 584 (2000).
- (2000) Biophys. J. , vol.78 , pp. 584
- Bryant, Z.¹ Pande, V.S.² Rokhsar, D.S.³

31
- 0013412734
- B. Heymann and H. Grubmuller, Chem. Phys. Lett. 303, 1 (1999).
- (1999) Chem. Phys. Lett. , vol.303 , pp. 1
- Heymann, B.¹ Grubmuller, H.²

32
- 0034874258
- B. Heymann and H. Grubmuller, Biophys. J. 81, 1295 (2001).
- (2001) Biophys. J. , vol.81 , pp. 1295
- Heymann, B.¹ Grubmuller, H.²

33
- 0030987036
- S. Izrailev, S. Stepaniants, M. Balsera, Y. Oono, and K. Schlten, Biophys. J. 72, 1568 (1997).
- (1997) Biophys. J. , vol.72 , pp. 1568
- Izrailev, S.¹ Stepaniants, S.² Balsera, M.³ Oono, Y.⁴ Schulten, K.⁵

34
- 0034691149
- D. K. Klimov and D. Thirumalai, Proc. Natl. Acad. Sci. U.S.A. 97, 7254 (2000).
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 7254
- Klimov, D.K.¹ Thirumalai, D.²

35
- 4043153405
- F.-Y. Li, J.-M. Yuan, and C.-Y. Mou, Phys. Rev. E 63, 021905 (2001).
- (2001) Phys. Rev. E , vol.63 , pp. 021905
- Li, F.-Y.¹ Yuan, J.-M.² Mou, C.-Y.³

36
- 0031848099
- H. Lu, B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten, Biophys. J. 75, 662 (1998).
- (1998) Biophys. J. , vol.75 , pp. 662
- Lu, H.¹ Isralewitz, B.² Krammer, A.³ Vogel, V.⁴ Schulten, K.⁵

37
- 0033445338
- H. Lu and K. Schulten, Chem. Phys. 247, 141 (1999).
- (1999) Chem. Phys. , vol.247 , pp. 141
- Lu, H.¹ Schulten, K.²

38
- 0033531973
- E. Paci and M. Karplus, J. Mol. Biol. 288, 441 (1999).
- (1999) J. Mol. Biol. , vol.288 , pp. 441
- Paci, E.¹ Karplus, M.²

39
- 0033064934
- R. Rohs, C. Etchebest, and R. Lavery, Biophys. J. 76, 2760 (1999).
- (1999) Biophys. J. , vol.76 , pp. 2760
- Rohs, R.¹ Etchebest, C.² Lavery, R.³

40
- 0037025564
- T. Shen, L. S. Canino, and J. A. McCammon, Phys. Rev. Lett. 89, 068103 (2002).
- (2002) Phys. Rev. Lett. , vol.89 , pp. 068103
- Shen, T.¹ Canino, L.S.² McCammon, J.A.³

41
- 0035366858
- D. E. Makarov, P. K. Hansma, and H. Metiu, J. Chem. Phys. 114, 9663 (2001).
- (2001) J. Chem. Phys. , vol.114 , pp. 9663
- Makarov, D.E.¹ Hansma, P.K.² Metiu, H.³

42
- 0032988663
- E. Evans and K. Ritchie, Biophys. J. 76, 2439 (1999).
- (1999) Biophys. J. , vol.76 , pp. 2439
- Evans, E.¹ Ritchie, K.²

43
- 0030872242
- M. Balsera, S. Stepaniants, S. Izrailev, Y. Oono, and K. Schulten, Biophys. J. 73, 1281 (1997).
- (1997) Biophys. J. , vol.73 , pp. 1281
- Balsera, M.¹ Stepaniants, S.² Izrailev, S.³ Oono, Y.⁴ Schulten, K.⁵

44
- 0035312645
- B. Isralewitz, M. Gao, and K. Schulten, Curr. Opin. Struct. Biol. 11, 224 (2001).
- (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 224
- Isralewitz, B.¹ Gao, M.² Schulten, K.³

45
- 0031001349
- E. Evans and K. Ritchie, Biophys. J. 72, 1541 (1997).
- (1997) Biophys. J. , vol.72 , pp. 1541
- Evans, E.¹ Ritchie, K.²

46
- 4243754128
- C. Jarzynski, Phys. Rev. Lett. 78, 2690 (1997).
- (1997) Phys. Rev. Lett. , vol.78 , pp. 2690
- Jarzynski, C.¹

47
- 0035957335
- C. Jarzynski, Proc. Natl. Acad. Sci. U.S.A. 98, 3636 (2001).
- (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 3636
- Jarzynski, C.¹

48
- 0035957434
- G. Hummer and A. Szabo, Proc. Natl. Acad. Sci. U.S.A. 98, 3658 (2001).
- (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 3658
- Hummer, G.¹ Szabo, A.²

49
- 0037036070
- J. Liphardt, S. Dumont, S. B. Smith, I. Tinoco, and C. Bustamante, Science 296, 1832 (2002).
- (2002) Science , vol.296 , pp. 1832
- Liphardt, J.¹ Dumont, S.² Smith, S.B.³ Tinoco, I.⁴ Bustamante, C.⁵

50
- 0037109040
- F. Ritort, C. Bustamante, and I. Tinoco, Proc. Natl. Acad. Sci. U.S.A. 99, 13544 (2002).
- (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 13544
- Ritort, F.¹ Bustamante, C.² Tinoco, I.³

51
- 0003927323
- Cambridge University Press, Cambridge
- J. A. McCammon and S. C. Harvey, Dynamics of Proteins and Nucleic Acids (Cambridge University Press, Cambridge, 1987).
- (1987) Dynamics of Proteins and Nucleic Acids
- McCammon, J.A.¹ Harvey, S.C.²

52
- 4043171970
- D. Qiu, P. S. Shenkin, F. P. Hollinger, and W. C. Still, J. Phys. Chem. A 101, 3005 (1997).
- (1997) J. Phys. Chem. A , vol.101 , pp. 3005
- Qiu, D.¹ Shenkin, P.S.² Hollinger, F.P.³ Still, W.C.⁴

53
- 0041784950
- A. D. MacKerell, Jr., D. Bashford, M. Bellott et al., J. Phys. Chem. B 102, 3586 (1998).
- (1998) J. Phys. Chem. B , vol.102 , pp. 3586
- Mackerell Jr., A.D.¹ Bashford, D.² Bellott, M.³

54
- 0036571983
- D. E. Makarov, Z. Wang, J. Thompson, and H. G. Hansma, J. Chem. Phys. 116, 7760 (2002).
- (2002) J. Chem. Phys. , vol.116 , pp. 7760
- Makarov, D.E.¹ Wang, Z.² Thompson, J.³ Hansma, H.G.⁴

55
- 33646987405
- A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 63, 1195 (1989).
- (1989) Phys. Rev. Lett. , vol.63 , pp. 1195
- Ferrenberg, A.M.¹ Swendsen, R.H.²

56
- 0003399724
- D. Frenkel and B. Smit, Understanding Molecular Simulation, 2nd ed. (Academic, San Diego, 2002).
- (2002) Understanding Molecular Simulation, 2nd Ed.
- Frenkel, D.¹ Smit, B.²

57
- 0033616713
- M. Carrion-Vazquez, A. F. Oberhauser, S. B. Fowler, P. E. Marsalek, S. E. Broedel, J. Clarke, and J. M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. 96, 3694 (1999).
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 3694
- Carrion-Vazquez, M.¹ Oberhauser, A.F.² Fowler, S.B.³ Marsalek, P.E.⁴ Broedel, S.E.⁵ Clarke, J.⁶ Fernandez, J.M.⁷

58
- 0043198470
- K. Eom, D. E. Makarov, P.-C. Li, and G. J. Rodin, J. Phys. Chem. B 107, 8730 (2003).
- (2003) J. Phys. Chem. B , vol.107 , pp. 8730
- Eom, K.¹ Makarov, D.E.² Li, P.-C.³ Rodin, G.J.⁴

59
- 0018101150
- G. I. Bell, Science 200, 618 (1978).
- (1978) Science , vol.200 , pp. 618
- Bell, G.I.¹

60
- 0347193736
- P. Hanggi, P. Talkner, and M. Borkovec, Rev. Mod. Phys. 62, 251 (1990).
- (1990) Rev. Mod. Phys. , vol.62 , pp. 251
- Hanggi, P.¹ Talkner, P.² Borkovec, M.³

61
- 84982060514
- O. Kratky and G. Porod, Revc. Trav. Chim. Pays-Bas. 68, 1106 (1949).
- (1949) Revc. Trav. Chim. Pays-Bas. , vol.68 , pp. 1106
- Kratky, O.¹ Porod, G.²

62
- 36849115224
- M. Fixman and J. Kovac, J. Chem. Phys. 58, 1564 (1973).
- (1973) J. Chem. Phys. , vol.58 , pp. 1564
- Fixman, M.¹ Kovac, J.²

63
- 0033880512
- M. B. Viani, L. I. Pietrasanta, J. B. Thompson, A. Chand, I. C. Gebeshuber, J. H. Kindt, M. Richter, H. G. Hansma, and P. K. Hansma, Nat. Struct. Biol. 7, 644 (2000).
- (2000) Nat. Struct. Biol. , vol.7 , pp. 644
- Viani, M.B.¹ Pietrasanta, L.I.² Thompson, J.B.³ Chand, A.⁴ Gebeshuber, I.C.⁵ Kindt, J.H.⁶ Richter, M.⁷ Hansma, H.G.⁸ Hansma, P.K.⁹

64
- 0037468835
- P. M. Williams, S. B. Fowler, R. B. Best, J. L. Toca-Herrera, K. A. Scott, A. Steward, and J. Clarke, Nature (London) 422, 446 (2003).
- (2003) Nature (London) , vol.422 , pp. 446
- Williams, P.M.¹ Fowler, S.B.² Best, R.B.³ Toca-Herrera, J.L.⁴ Scott, K.A.⁵ Steward, A.⁶ Clarke, J.⁷

65
- 0029881007
- R. Koradi, M. Billeter, and K. Wüthrich, J. Mol. Graphics 14, 51 (1996).
- (1996) J. Mol. Graphics , vol.14 , pp. 51
- Koradi, R.¹ Billeter, M.² Wüthrich, K.³

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