메뉴 건너뛰기




Volumn 31, Issue 13, 2003, Pages 3393-3399

Integrated databanks access and sequence/structure analysis services at the PBIL

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARRIER PROTEIN; NUCLEIC ACID; PROTEIN;

EID: 17744405989     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg530     Document Type: Article
Times cited : (33)

References (40)
  • 1
    • 0022118360 scopus 로고
    • ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage
    • Gouy, M., Gautier, C., Attimonelli, M., Lanave,C. and di Paola,G. (1985) ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. Comput. Appl. Biosci., 1, 167-172.
    • (1985) Comput. Appl. Biosci. , vol.1 , pp. 167-172
    • Gouy, M.1    Gautier, C.2    Attimonelli, M.3    Lanave, C.4    di Paola, G.5
  • 6
    • 0012843776 scopus 로고    scopus 로고
    • HOVERGEN: Database and software for comparative analysis of homologous vertebrate genes
    • Letovsky,S. (ed.), Kluwer Academic Publishers, Boston
    • Duret, L., Perrière, G. and Gouy, M. (1999) HOVERGEN: database and software for comparative analysis of homologous vertebrate genes. In Letovsky,S. (ed.), Bioinformatics Databases and Systems. Kluwer Academic Publishers, Boston, pp. 13-29.
    • (1999) Bioinformatics Databases and Systems , pp. 13-29
    • Duret, L.1    Perrière, G.2    Gouy, M.3
  • 7
    • 0343618652 scopus 로고    scopus 로고
    • HOBACGEN: Database system for comparative genomics in bacteria
    • Perrière, G., Duret, L. and Gouy, M. (2000) HOBACGEN: database system for comparative genomics in bacteria. Genome Res., 10, 379-385.
    • (2000) Genome Res. , vol.10 , pp. 379-385
    • Perrière, G.1    Duret, L.2    Gouy, M.3
  • 10
    • 0343920737 scopus 로고    scopus 로고
    • EMGLib: The Enhanced Microbial Genomes Library
    • (update 2000)
    • Perrière, G., Bessières, P. and Labedan, B. (2000) EMGLib: the Enhanced Microbial Genomes Library (update 2000). Nucleic Acids Res., 28, 68-71.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 68-71
    • Perrière, G.1    Bessières, P.2    Labedan, B.3
  • 11
    • 0343458156 scopus 로고    scopus 로고
    • The non-redundant Bacillus subtilis (NRSub) database: Update 1998
    • Perrière, G., Gouy, M. and Gojobori, T. (1998) The non-redundant Bacillus subtilis (NRSub) database: update 1998. Nucleic Acids Res., 26, 61-63.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 61-63
    • Perrière, G.1    Gouy, M.2    Gojobori, T.3
  • 12
    • 0035025126 scopus 로고    scopus 로고
    • ATV: Display and manipulation of annotated phylogenetic trees
    • Zmasek, C.M. and Eddy, S.R. (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics, 17, 383-384.
    • (2001) Bioinformatics , vol.17 , pp. 383-384
    • Zmasek, C.M.1    Eddy, S.R.2
  • 13
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • Perrière, G. and Gouy, M. (1996) WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 14
    • 0030464460 scopus 로고    scopus 로고
    • SeaView and Phylon: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier, N., Gouy, M. and Gautier, C. (1996) SeaView and Phylon: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci., 12, 543-548.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 15
    • 0035999991 scopus 로고    scopus 로고
    • CpGProD: Identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
    • Ponger, L. and Mouchiroud, D. (2002) CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics, 18, 631-633.
    • (2002) Bioinformatics , vol.18 , pp. 631-633
    • Ponger, L.1    Mouchiroud, D.2
  • 16
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M. and Li, W.H. (1987) The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res., 15, 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 18
    • 0029967362 scopus 로고    scopus 로고
    • SRS: Information retrieval system for molecular biology data banks
    • Etzold, T., Ulyanov, A. and Argos, P. (1996) SRS: information retrieval system for molecular biology data banks. Methods Enzymol., 266, 114-128.
    • (1996) Methods Enzymol. , vol.266 , pp. 114-128
    • Etzold, T.1    Ulyanov, A.2    Argos, P.3
  • 20
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F. and Waterman, M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 21
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 22
    • 0036172167 scopus 로고    scopus 로고
    • Geno3D: Automatic comparative molecular modelling of protein
    • Combet, C., Jambon M., Deléage, G. and Geourjon, C. (2002) Geno3D: automatic comparative molecular modelling of protein. Bioinformatics, 18, 213-214.
    • (2002) Bioinformatics , vol.18 , pp. 213-214
    • Combet, C.1    Jambon, M.2    Deléage, G.3    Geourjon, C.4
  • 26
  • 27
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet,F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 28
    • 0033081846 scopus 로고    scopus 로고
    • A modified definition of SOV, a segment-based measure for protein secondary structure prediction assessment
    • Zemla,A., Venclovas,C., Fidelis,K. and Rost,B. (1999) A modified definition of SOV, a segment-based measure for protein secondary structure prediction assessment. Proteins, 34, 220-223.
    • (1999) Proteins , vol.34 , pp. 220-223
    • Zemla, A.1    Venclovas, C.2    Fidelis, K.3    Rost, B.4
  • 29
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 30
    • 0035029214 scopus 로고    scopus 로고
    • ANTHEPROT: An integrated protein sequence analysis software with client/server capabilities
    • Deléage,G., Combet,C., Blanchet,C. and Geourjon,C. (2001) ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities. Comput. Biol. Med., 31, 259-267.
    • (2001) Comput. Biol. Med. , vol.31 , pp. 259-267
    • Deléage, G.1    Combet, C.2    Blanchet, C.3    Geourjon, C.4
  • 31
    • 0034088594 scopus 로고    scopus 로고
    • MPSA: Integrated system for multiple protein sequence analysis with client/server capabilities
    • Blanchet,C., Combet,C., Geourjon,C. and Deléage,G. (2000) MPSA: integrated system for multiple protein sequence analysis with client/server capabilities. Bioinformatics, 16, 286-287.
    • (2000) Bioinformatics , vol.16 , pp. 286-287
    • Blanchet, C.1    Combet, C.2    Geourjon, C.3    Deléage, G.4
  • 32
    • 0029595442 scopus 로고
    • SOPMA: Significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments
    • Geourjon,C. and Deléage,G. (1995) SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci., 11, 681-684.
    • (1995) Comput. Appl. Biosci. , vol.11 , pp. 681-684
    • Geourjon, C.1    Deléage, G.2
  • 33
    • 0028064006 scopus 로고
    • Redefining the goals of protein secondary structure prediction
    • Rost,B., Sander,C. and Schneider,R. (1994) Redefining the goals of protein secondary structure prediction. J. Mol. Biol., 235, 13-26.
    • (1994) J. Mol. Biol. , vol.235 , pp. 13-26
    • Rost, B.1    Sander, C.2    Schneider, R.3
  • 34
    • 0035082495 scopus 로고    scopus 로고
    • Identification of related proteins with weak sequence identity using secondary structure information
    • Geourjon,C., Combet,C., Blanchet,C. and Deléage,G. (2001) Identification of related proteins with weak sequence identity using secondary structure information. Protein Sci., 10, 788-797.
    • (2001) Protein Sci. , vol.10 , pp. 788-797
    • Geourjon, C.1    Combet, C.2    Blanchet, C.3    Deléage, G.4
  • 35
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski,R.A., McArthur,M.W., Moss,D.S. and Thornton,J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst., 26, 283-291.
    • (1993) J. Appl. Cryst. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    McArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 36
    • 0001878986 scopus 로고    scopus 로고
    • ADE-4: A multivariate analysis and graphical display software
    • Thioulouse,J., Chessel,D., Dolédec,S. and Olivier,J.M. (1997) ADE-4: a multivariate analysis and graphical display software. Stat. Comput., 7, 75-83.
    • (1997) Stat. Comput. , vol.7 , pp. 75-83
    • Thioulouse, J.1    Chessel, D.2    Dolédec, S.3    Olivier, J.M.4
  • 37
    • 0037295628 scopus 로고    scopus 로고
    • Use of correspondence discriminant analysis to predict the subcellular location of bacterial proteins
    • Perrière,G. and Thioulouse,J. (2003) Use of correspondence discriminant analysis to predict the subcellular location of bacterial proteins. Comput. Methods Programs Biomed., 70, 99-105.
    • (2003) Comput. Methods Programs Biomed. , vol.70 , pp. 99-105
    • Perrière, G.1    Thioulouse, J.2
  • 40


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.