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Volumn 10, Issue 1, 2000, Pages 129-136

A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST DNA; PLANT DNA;

EID: 0033977088     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (123)

References (43)
  • 2
    • 0030479076 scopus 로고    scopus 로고
    • High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: A major fruit weight quantitative trait locus in tomato
    • Alpert, K.B. and S.D. Tanksley. 1996. High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: A major fruit weight quantitative trait locus in tomato. Proc. Natl. Acad. Sci. 93: 15503-15507.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 15503-15507
    • Alpert, K.B.1    Tanksley, S.D.2
  • 3
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan, K. and E.D. Earle. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
    • (1991) Plant Mol. Biol. Rep. , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 4
    • 0032893084 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. GenBank
    • Bairoch, A. and R. Apweiler. 1999. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. GenBank. Nucleic Acids Res. 27: 49-54.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 49-54
    • Bairoch, A.1    Apweiler, R.2
  • 6
    • 0000258233 scopus 로고
    • RFLP maps based on a Common set of clones reveal modes of chromosomal evolution in potato and tomato
    • Bonierbale, M.W., R.L. Plaisted, and S.D. Tanksley. 1988. RFLP maps based on a Common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics 120: 1095-1103.
    • (1988) Genetics , vol.120 , pp. 1095-1103
    • Bonierbale, M.W.1    Plaisted, R.L.2    Tanksley, S.D.3
  • 7
    • 0030064555 scopus 로고    scopus 로고
    • An improved method of partially digesting plant megabase DNA suitable for YAC cloning: Application to the construction of a 5.5 genome equivalent YAC library of tomato
    • Bonnema, G., J. Hontelelz, R. Verkerk, Y.Q. Zhang, R. van Daelen, A. van Kammen, and P. Zabel. 1996. An improved method of partially digesting plant megabase DNA suitable for YAC cloning: Application to the construction of a 5.5 genome equivalent YAC library of tomato. Plant J. 9: 125-133.
    • (1996) Plant J. , vol.9 , pp. 125-133
    • Bonnema, G.1    Hontelelz, J.2    Verkerk, R.3    Zhang, Y.Q.4    Van Daelen, R.5    Van Kammen, A.6    Zabel, P.7
  • 8
    • 0030895401 scopus 로고    scopus 로고
    • Analysis of the 1.1-Mb human a/d T-cell receptor locus with bacterial artificial chromosome clones
    • Boysen, C., M.L. Simon, and L. Hood. 1997. Analysis of the 1.1-Mb human a/d T-cell receptor locus with bacterial artificial chromosome clones. Genome Res. 7: 330-338.
    • (1997) Genome Res. , vol.7 , pp. 330-338
    • Boysen, C.1    Simon, M.L.2    Hood, L.3
  • 9
    • 0029098105 scopus 로고
    • Distribution of unlinked transposition of a Ds element from a T-DNA locus on tomato chromosome 4
    • Briza, J., B.J. Carroll, V.I. Klimyuk, C.M. Thomas, D.A. Jones, and J.D.G. Jones. 1995. Distribution of unlinked transposition of a Ds element from a T-DNA locus on tomato chromosome 4. Genetics 141: 383-390.
    • (1995) Genetics , vol.141 , pp. 383-390
    • Briza, J.1    Carroll, B.J.2    Klimyuk, V.I.3    Thomas, C.M.4    Jones, D.A.5    Jones, J.D.G.6
  • 10
    • 0029671228 scopus 로고    scopus 로고
    • Characterization and genetic mapping of simple repeat sequences in the tomato genome
    • Broun, P. and S.D. Tanksley. 1996. Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol. & Gen. Genet. 250: 39-49.
    • (1996) Mol. & Gen. Genet. , vol.250 , pp. 39-49
    • Broun, P.1    Tanksley, S.D.2
  • 11
    • 0003038371 scopus 로고
    • Construction and characterization of a bacterial artificial chromosome library from Arabidopsis thaliana
    • Choi, S.D., R. Creelman, J. Mullet, and R.A. Wing. 1995. Construction and characterization of a bacterial artificial chromosome library from Arabidopsis thaliana. Weeds World 2: 17-20.
    • (1995) Weeds World , vol.2 , pp. 17-20
    • Choi, S.D.1    Creelman, R.2    Mullet, J.3    Wing, R.A.4
  • 13
    • 0031918661 scopus 로고    scopus 로고
    • A bacterial artificial chromosome library for soybean and identification of clones near a major cyst nematode resistance gene
    • Danesh, D., S. Peneula, J. Mudge, R.L. Denny, H. Nordstrom, J.P. Martinez, and N.D. Young. 1998. A bacterial artificial chromosome library for soybean and identification of clones near a major cyst nematode resistance gene. Theor. Appl. Genet. 96: 196-202.
    • (1998) Theor. Appl. Genet. , vol.96 , pp. 196-202
    • Danesh, D.1    Peneula, S.2    Mudge, J.3    Denny, R.L.4    Nordstrom, H.5    Martinez, J.P.6    Young, N.D.7
  • 14
    • 0030059118 scopus 로고    scopus 로고
    • Variation in the ratio of physical to genetic distance in intervals adjacent to the M1a locus on barley chromosome 1H
    • De Scenzo, R.A. and R.P. Wise. 1996. Variation in the ratio of physical to genetic distance in intervals adjacent to the M1a locus on barley chromosome 1H. Mol. & Gen. Genet. 251: 472-482.
    • (1996) Mol. & Gen. Genet. , vol.251 , pp. 472-482
    • De Scenzo, R.A.1    Wise, R.P.2
  • 15
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. and P. Green. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 16
    • 0021381028 scopus 로고
    • A technique for radio-labeling DNA fragments to high specific activity
    • Feinberg, A.P. and S.A. Vogelstein. 1984. A technique for radio-labeling DNA fragments to high specific activity. Anal. Biochem. 137: 266-267.
    • (1984) Anal. Biochem. , vol.137 , pp. 266-267
    • Feinberg, A.P.1    Vogelstein, S.A.2
  • 17
    • 0001700059 scopus 로고
    • A molecular and cytogenetics survey of major repeated DNA sequences in tomato
    • Ganal, M.W., N.L.V. Lapitan, and S.D. Tanksley. 1988. A molecular and cytogenetics survey of major repeated DNA sequences in tomato. Mol. & Gen. Genet. 213: 262-268.
    • (1988) Mol. & Gen. Genet. , vol.213 , pp. 262-268
    • Ganal, M.W.1    Lapitan, N.L.V.2    Tanksley, S.D.3
  • 18
    • 51249174952 scopus 로고
    • Analysis of tomato DNA by pulsed filed gel electrophoresis
    • Ganal, M.W. and S.D. Tanksley. 1989. Analysis of tomato DNA by pulsed filed gel electrophoresis. Plant Mol. Biol. 7: 17-28.
    • (1989) Plant Mol. Biol. , vol.7 , pp. 17-28
    • Ganal, M.W.1    Tanksley, S.D.2
  • 20
    • 0025947337 scopus 로고
    • Detection and characterization of chimeric yeast artificial-chromosome clones
    • Green, E.D., H.C. Riethman, J.E. Dutchik, and M.V. Olson. 1991. Detection and characterization of chimeric yeast artificial-chromosome clones. Genomics 11: 658-669.
    • (1991) Genomics , vol.11 , pp. 658-669
    • Green, E.D.1    Riethman, H.C.2    Dutchik, J.E.3    Olson, M.V.4
  • 21
    • 0032957771 scopus 로고    scopus 로고
    • Construction of tomato genomic DNA libraries in a binary BAC (BIBAC) vector
    • Hamilton, C.M., A. Frary, Y. Xu, S.D. Tanksley, and H.-B. Zhang. 1999. Construction of tomato genomic DNA libraries in a binary BAC (BIBAC) vector. Plant J. 18: 223-229.
    • (1999) Plant J. , vol.18 , pp. 223-229
    • Hamilton, C.M.1    Frary, A.2    Xu, Y.3    Tanksley, S.D.4    Zhang, H.-B.5
  • 22
    • 0031408609 scopus 로고    scopus 로고
    • BAC contig development by fingerprint analysis in soybean
    • Marek, F.L. and R.C. Shoemaker. 1997. BAC contig development by fingerprint analysis in soybean. Genomics 40: 420-427.
    • (1997) Genomics , vol.40 , pp. 420-427
    • Marek, F.L.1    Shoemaker, R.C.2
  • 26
    • 0026693412 scopus 로고
    • Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci
    • Martin, G.B., M.W. Ganal, and S.D. Tanksley. 1992. Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci. Mol. & Gen. Genet. 233: 25-32.
    • (1992) Mol. & Gen. Genet. , vol.233 , pp. 25-32
    • Martin, G.B.1    Ganal, M.W.2    Tanksley, S.D.3
  • 27
    • 0003019657 scopus 로고
    • Leaf disc transformation of cultivated tomato (L. esculentum) using Agrobacterium tumefaciens
    • McCormick, S., J. Niedermeyer, J. Fry, A. Barnason, R. Horsch, and R. Fraley. 1986. Leaf disc transformation of cultivated tomato (L. esculentum) using Agrobacterium tumefaciens. Plant Cell Reports 5: 81-84.
    • (1986) Plant Cell Reports , vol.5 , pp. 81-84
    • McCormick, S.1    Niedermeyer, J.2    Fry, J.3    Barnason, A.4    Horsch, R.5    Fraley, R.6
  • 29
    • 0030958788 scopus 로고    scopus 로고
    • Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance gene Pi-ta2 using a highly representative rice BAC library
    • Nakamura, S., S. Asakawa, N. Ohmido, K. Fukui, N. Shimizu, S. Kawasaki. 1997. Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance gene Pi-ta2 using a highly representative rice BAC library. Mol. & Gen. Genet. 254: 611-620.
    • (1997) Mol. & Gen. Genet. , vol.254 , pp. 611-620
    • Nakamura, S.1    Asakawa, S.2    Ohmido, N.3    Fukui, K.4    Shimizu, N.5    Kawasaki, S.6
  • 30
    • 0024293278 scopus 로고
    • Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms
    • Paterson, A.H., E.S. Lander, J.D. Hewitt, S. Peterson, S.E. Lincoln, and S.D. Tanksley. 1988. Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335: 721-726.
    • (1988) Nature , vol.335 , pp. 721-726
    • Paterson, A.H.1    Lander, E.S.2    Hewitt, J.D.3    Peterson, S.4    Lincoln, S.E.5    Tanksley, S.D.6
  • 31
    • 0000968572 scopus 로고
    • Description of isogenic lines, except for one, or two, monogenically controlled morphological traits in tomato, Lycopersicon esculentum Mill
    • Philouze, J., 1991. Description of isogenic lines, except for one, or two, monogenically controlled morphological traits in tomato, Lycopersicon esculentum Mill. Euphytica 56: 121-131.
    • (1991) Euphytica , vol.56 , pp. 121-131
    • Philouze, J.1
  • 32
    • 0024256922 scopus 로고
    • Classical and molecular genetics of tomato: Highlights and perspectives
    • Rick, C.M. and J.T. Yoder. 1988. Classical and molecular genetics of tomato: Highlights and perspectives. Annu. Rev. Genet. 22: 281-300.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 281-300
    • Rick, C.M.1    Yoder, J.T.2
  • 34
    • 0030884943 scopus 로고    scopus 로고
    • Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA
    • Strong, S.J., Y. Ohta, G.W. Litman, C.T. Amemiya. 1997. Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA. Nucleic Acids Res. 25: 3959-3961.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3959-3961
    • Strong, S.J.1    Ohta, Y.2    Litman, G.W.3    Amemiya, C.T.4
  • 37
    • 0033197783 scopus 로고    scopus 로고
    • A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance
    • Tomkins, J.P., R. Mahalingam, H. Smith, J.L. Goicoechea, H.T. Knap, and R.A. Wing. 1999. A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance. Plant Mol. Biol. 41: 2532.
    • (1999) Plant Mol. Biol. , vol.41 , pp. 2532
    • Tomkins, J.P.1    Mahalingam, R.2    Smith, H.3    Goicoechea, J.L.4    Knap, H.T.5    Wing, R.A.6
  • 38
    • 0029955205 scopus 로고    scopus 로고
    • A new strategy for genome sequencing
    • Venter, J.C., H.O. Smith, and L. Hood. 1996. A new strategy for genome sequencing. Nature 381:364-366.
    • (1996) Nature , vol.381 , pp. 364-366
    • Venter, J.C.1    Smith, H.O.2    Hood, L.3
  • 39
    • 0029561719 scopus 로고
    • An ethylene inducible component of signal transduction encoded by never-ripe
    • Wilkinson, J.Q., M.B. Lanahan, H.C. Yen, J.J. Giovannoni, and H.J. Klee. 1995. An ethylene inducible component of signal transduction encoded by never-ripe. Science 270: 1807-1809.
    • (1995) Science , vol.270 , pp. 1807-1809
    • Wilkinson, J.Q.1    Lanahan, M.B.2    Yen, H.C.3    Giovannoni, J.J.4    Klee, H.J.5
  • 40
    • 0028567284 scopus 로고
    • Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor
    • Woo, S.-S., J. Jiang, B.S. Gill, A.H. Paterson, and R.A. Wing. 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22: 4922-4931.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4922-4931
    • Woo, S.-S.1    Jiang, J.2    Gill, B.S.3    Paterson, A.H.4    Wing, R.A.5
  • 41
    • 0000626638 scopus 로고
    • Tomato genome is comprised largely of fast-evolving, low copy-number sequences
    • Zamir, D. and S.D. Tanksley. 1988. Tomato genome is comprised largely of fast-evolving, low copy-number sequences. Mol. & Gen. Genet. 213: 254-261.
    • (1988) Mol. & Gen. Genet. , vol.213 , pp. 254-261
    • Zamir, D.1    Tanksley, S.D.2
  • 42
    • 0030060516 scopus 로고    scopus 로고
    • Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population
    • Zhang, H.B., S.D. Choi, S.-S. Woo, Z. Li, and R.A. Wing. 1996. Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population. Mol. Breeding 2: 11-24.
    • (1996) Mol. Breeding , vol.2 , pp. 11-24
    • Zhang, H.B.1    Choi, S.D.2    Woo, S.-S.3    Li, Z.4    Wing, R.A.5
  • 43
    • 0343375489 scopus 로고    scopus 로고
    • Genetic mapping of jointless-2 to tomato chromosome 12 using RFLP and RAPD markers
    • in press
    • Zhang, H.B., M.A. Budiman, and R.A. Wing. 1999. Genetic mapping of jointless-2 to tomato chromosome 12 using RFLP and RAPD markers. Theor. Appl. Genet. (in press).
    • (1999) Theor. Appl. Genet.
    • Zhang, H.B.1    Budiman, M.A.2    Wing, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.