Characterization of Sparus aurata osteonectin cDNA and in silico analysis of protein conserved features: Evidence for more than one osteonectin in Salmonidae

Biochimie

Volumn 87, Issue 5, 2005, Pages 411-420

  Laizé, Vincent ^a   Pombinho, António R ^a   Cancela, M Leonor ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

Author keywords

Extracellular matrix; Fish cell line; Larval development; Osteonectin; SPARC; Sparus aurata (teleostei)

Indexed keywords

COMPLEMENTARY DNA; OSTEONECTIN;

ARTICLE; BONE DEVELOPMENT; CALCIUM BINDING; COMPUTER MODEL; DISULFIDE BOND; DNA DETERMINATION; GASTRULATION; GENE; GENETIC CONSERVATION; LARVAL DEVELOPMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OSSIFICATION; PHOSPHORYLATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; SALMONID; SEQUENCE ALIGNMENT;

EID: 16844379888     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biochi.2005.01.008     Document Type: Article

References (39)

1. P. Bornstein Diversity of function is inherent in matricellular proteins: an appraisal of thrombospondin 1 J. Cell Biol. 130 1995 503 506
2. J.D. Termine, H.K. Kleinman, S.W. Whitson, K.M. Conn, M.L. McGarvey, and G.R. Martin Osteonectin, a bone-specific protein linking mineral to collagen Cell 26 1981 99 105
3. Q. Yan, and E.H. Sage SPARC, a matricellular glycoprotein with important biological functions J. Histochem. Cytochem. 47 1999 1495 1505
4. A.D. Bradshaw, and E.H. Sage SPARC, a matricellular protein that functions in cellular differentiation and tissue response to injury J. Clin. Invest. 107 2001 1049 1054
5. D.T. Gilmour, G.J. Lyon, M.B.L. Carlton, J.R. Sanes, J.M. Cunningham, and J.R. Anderson Mice deficient for the secreted glycoprotein SPARC/osteonectin/ BM40 develop normally but show severe age-onset cataract formation and disruption of the lens EMBO J. 17 1998 1860 1870
6. P. Bornstein, and E. Sage Matricellular proteins: extracellular modulators of cell function Curr. Opin. Cell Biol. 14 2002 608 616
7. M.E. Bolander, M.F. Young, L.W. Fisher, Y. Yamada, and J.D. Termine Osteonectin cDNA sequence reveals potential binding regions for calcium and hydroxyapatite and shows homologies with both a basement membrane protein (SPARC) and a serine proteinase inhibitor (ovomucoid) Proc. Natl. Acad. Sci. USA 85 1988 2919 2923
8. P. Maurer, U. Mayer, M. Bruch, P. Jeno, K. Mann, and R. Landwehr High-affinity and low-affinity calcium binding and stability of the multidomain extracellular 40-kDa basement membrane glycoprotein (BM-40/SPARC/osteonectin) Eur. J. Biochem. 205 1992 233 240
9. T. Sasaki, E. Hohenester, W. Gohring, and R. Timpl Crystal structure and mapping by site-directed mutagenesis of the collagen-binding epitope of an activated form of BM-40/SPARC/osteonectin EMBO J. 17 1998 1625 1634
10. E. Hohenester, P. Maurer, and R. Timpl Crystal structure of a pair of follistatin-like and EF-hand calcium-binding domains in BM-40 EMBO J. 16 1997 3778 3786
11. E. Hohenester, P. Maurer, C. Hohenadl, R. Timpl, J. Jansonius, and J. Engel Structure of a novel extracellular Ca(2+)-binding module in BM-40 Nat. Struct. Biol. 3 1996 67 73
12. A.R. Pombinho, V. Laize, D.M. Molha, S.M.P. Marques, and M.L. Cancela Development of two bone-derived cell lines from the marine teleost Sparus aurata; evidence for extracellular matrix mineralization and cell-type-specific expression of matrix Gla protein and osteocalcin Cell Tissue Res. 315 2004 393 406
13. P. Chomczynski, and N. Sacchi Single-step method of RNA isolation by acid guanidinium thiocyanate phenol chloroform extraction Anal. Biochem. 162 1987 156 159
14. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
15. N. Blom, S. Gammeltoft, and S. Brunak Sequence and structure-based prediction of eukaryotic protein phosphorylation sites J. Mol. Biol. 294 1999 1351 1362
16. H. Nielsen, J. Engelbrecht, S. Brunak, and G. von Heijne Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites Protein Eng. 10 1997 1 6
17. N.J. Mulder, R. Apweiler, T.K. Attwood, A. Bairoch, D. Barrell, and A. Bateman The InterPro Database, 2003 brings increased coverage and new features Nucleic Acids Res. 31 2003 315 318
18. C. Notredame, D.G. Higgins, and J. Heringa T-Coffee: a novel method for fast and accurate multiple sequence alignment J. Mol. Biol. 302 2000 205 217
19. T.D. Schneider, and R.M. Stephens Sequence logos--a new way to display consensus sequences Nucleic Acids Res. 18 1990 6097 6100
20. J. Engel, W. Taylor, M. Paulsson, H. Sage, and B. Hogan Calcium binding domains and calcium-induced conformational transition of SPARC/BM-40/ Osteonectin, an extracellular glycoprotein expressed in mineralized and nonmineralized tissues Biochemistry 26 1987 6958 6965
21. M. Young, A. Day, P. Dominquez, C. McQuillan, L. Fisher, and J. Termine Structure and expression of osteonectin mRNA in human tissue Connect. Tissue Res. 24 1990 17 28
22. J. Termine Cellular activity, matrix proteins, and aging bone Exp. Gerontol. 25 1990 217 221
23. A.M. Delany, M. Amling, M. Priemel, C. Howe, R. Baron, and E. Canalis Osteopenia and decreased bone formation in osteonectin-deficient mice J. Clin. Invest. 105 2000 915 923
24. R. Ishigaki, M. Takagi, M. Igarashi, and K. Ito Gene expression and immunohistochemical localization of osteonectin in association with early bone formation in the developing mandible Histochem. J. 34 2002 57 66
25. A.L. Boskey, D.J. Moore, M. Amling, E. Canalis, and A.M. Delany Infrared analysis of the mineral and matrix in bones of osteonectin-null mice and their wildtype controls J. Bone Miner. Res. 18 2003 1005 1011
26. A.M. Delany, I. Kalajzic, A.D. Bradshaw, E.H. Sage, and E. Canalis Osteonectin-null mutation compromises osteoblast formation, maturation, and survival Endocrinology 144 2003 2588 2596
27. A.D. Bradshaw, D.C. Graves, K. Motamed, and E.H. Sage SPARC-null mice exhibit increased adiposity without significant differences in overall body weight Proc. Natl. Acad. Sci. USA 100 2003 6045 6050
28. F.W. Allendorf, and G.H. Thorgaard Tetraploidy and the evolution of salmonid fishes B.J. Turner Evolutionary Genetics of Fishes 1984 Plenum Press New York 1 46
29. R. Romberg, P. Werness, P. Lollar, B. Riggs, and K. Mann Isolation and characterization of native adult osteonectin J. Biol. Chem. 260 1985 2728 2736
30. L. Patthy, and K. Nikolics Functions of agrin and agrin-related proteins Trends Neurosci. 16 1993 76 81
31. T. Lane, M. Iruela-Arispe, R. Johnson, and E. Sage SPARC is a source of copper-binding peptides that stimulate angiogenesis J. Cell Biol. 125 1994 929 943
32. H.Y. Zhou, E. Salih, and M.J. Glimcher Isolation of a novel bone glycosylated phosphoprotein with disulphide cross-links to osteonectin Biochem. J. 330 1998 1423 1431
33. E. Busch, E. Hohenester, R. Timpl, M. Paulsson, and P. Maurer Calcium affinity, cooperativity, and domain interactions of extracellular EF-hands present in BM-40 J. Biol. Chem. 275 2000 25508 25515
34. M. Nelson, and W. Chazin Structures of EF-hand Ca(2+)-binding proteins: diversity in the organization, packing and response to Ca2+ binding Biometals 11 1998 297 318
35. N.D. Moncrief, R.H. Kretsinger, and M. Goodman Evolution of EF-hand calcium-modulated proteins. 1. Relationships based on amino-acid sequences J. Mol. Evol. 30 1990 522 562
36. R.L. Xie, and G.L. Long Role of N-linked glycosylation in human osteonectin: effect of carbohydrate removal by N-glycanase and site-directed mutagenesis on structure and binding of type V collagen J. Biol. Chem. 270 1995 23212 23217
37. R.J. Kelm, and K.G. Mann The collagen binding specificity of bone and platelet osteonectin is related to differences in glycosylation J. Biol. Chem. 266 1991 9632 9639
38. K. Kim, M. Son, J.B. Peterson, and D.L. Nelson Ca2+-binding proteins of cilia and infraciliary lattice of Paramecium tetraurelia: their phosphorylation by purified endogenous Ca2+-dependent protein kinases J. Cell Sci. 115 2002 1973 1984
39. D.B. Lehane, N. McKie, R.G.G. Russell, and I.W. Henderson Cloning of a fragment of the osteonectin gene from goldfish, Carassius auratus: its expression and potential regulation by estrogen Gen. Comp. Endocrinol. 114 1999 80 87