Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution

Genetics

Volumn 147, Issue 3, 1997, Pages 1259-1266

  Nadeau, Joseph H ^a   Sankoff, David ^b  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITÉ DE MONTRÉAL   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ARTICLE; EVOLUTION; GENE; GENE DUPLICATION; GENE LOSS; GENOME; HUMAN; MODEL; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; VERTEBRATE;

ANIMALS; EVOLUTION, MOLECULAR; GENE DELETION; MATHEMATICAL COMPUTING; MODELS, GENETIC; MULTIGENE FAMILY; VERTEBRATES;

VERTEBRATA;

EID: 0030716471     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (44)

1. ALLENDORF, F. W., 1979 Rapid loss of duplicate gene expression by atural selection. Heredity 43: 247-258.
2. ATKIN, N. B., and S. OHNO, 1967 DNA values of four primitive chordates. Chromosoma 23: 10-13.
3. BAILEY, G. S., R. T. M. POULTER and P. A. STOCKWELL, 1978 Gene duplication in tetraploid fish: model for gene silencing at unlinked duplicated loci. Proc. Natl. Acad. Sci. USA 75: 5575-5579.
4. BASTEN, C. J., and T. OHTA, 1992 Simulation study of a multigene family, with special reference to the evolution of compensatory advantageous mutations. Genetics 132: 247-252.
5. BERRY, R.J., 1981 Population dynamics in the house mouse, pp. 395-426 in Biology of the Home Mouse, edited by R. J. BERRy. Academic Press, New York.
6. CLARK, A. G., 1994 Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA 91: 2950-2954.
7. COMINGS, D. E., 1972 Evidence for ancient tetraploidy and conservation of linkage groups in mammalian chromosomes. Nature 238: 455-457.
8. FERRIS, S. D., and G. S. WHITT, 1977 Loss of duplicate gene expression after polyploidization. Nature 265: 258-260.
9. FERRIS, S. D., and G. S. WHITT, 1979 Evolution of differential regulation of duplicate genes after polyploidization. J. Mol. Evol. 12: 267-317.
10. FISHER, R. A., 1935 The sheltering of lethals. Am. Nat. 69: 446-455.
11. FRYXELL, K.J., 1996 The coevolution of gene family trees. Trends Genet. 12: 364-369.
12. GOJOBORI, T., W.-H. LI and D. GRAUR, 1982 Patterns of nucleotide substitution in pseudogenes and functional genes. J. Mol. Evol. 18: 360-369.
13. GOODMAN, M., 1976 Protein sequences in phylogeny, pp. 141-159 in Molecular Evolution, edited by F. J. AYALA. Sinauer Associates, Sunderland, MA.
14. HALDANE, J. B. S., 1933a The part played by recurrent mutation in evolution. Am. Nat. 69: 446-455.
15. HALDANE, J. B. S., 1933b The Causes of Evolution. Longwood Green, London.
16. HINEGARDNER, R., 1968 Evolution of cellular DNA content in teleost fishes. Am. Nat. 102: 517-523.
17. HOOD, L., J. H. CAMPBELL and S. C. R. ELGIN, 1975 The organization, expression, and evolution of antibody genes and other multigene families. Annu. Rev. Genet. 9: 305-353.
18. HUGHES, M. K., and A. L. HUGHES, 1993 Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol. Biol. Evol. 10: 1360-1369.
19. KIMURA, M., 1983 The Neutral Theory of Evolution. Cambridge University Press, London.
20. KIMURA, M., and J. T. KING, 1979 Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift. Proc. Natl. Acad. Sci. USA 76: 2858-2861.
21. KJMURA, M., and T. OHTA, 1974 On some principles governing molecular evolution. Proc. Natl. Acad. Sci. USA 71: 2848-2852.
22. LI, W.-H., 1980 Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes. Genetics 95: 237-258.
23. LI, W.-H., 1982 Evolutionary change of duplicated genes, pp. 55-92 in Isozymes: Current Topics in Biological and Medical Research, Vol. 6, edited by M. C. RATTAZZI, J. G. SCANDALIOS and G. S. WHITT. A. R. Liss, New York.
24. LI, W.-H., 1985 Accelerated evolution following gene duplication and its implication for the neutralist-selectionist controversy, pp. 333-353 in Population Genetics and Molecular Evolution, edited by T. OHTA and K. AOKI. Japan Scientific Society Press, Tokyo and Springer Verlag, Berlin.
25. LI, W.-H., and T. GOJOBORI, 1983 Rapid evolution of goat and sheep globin genes following gene duplication. Mol. Biol. Evol. 1: 94-108.
26. LUNDIN, L.-G., 1979 Evolutionary conservation of large chromosomal segments reflected in mammalian gene maps. Clin. Genet. 16: 72-81.
27. LUNDIN, L.-G., 1989 Gene homologies with emphasis on paralogous genes and chromosomal regions. Life Sci. Adv. (Genet.) 8: 89-104.
28. LUNDIN, L.-G., 1993 Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics 16: 1-19.
29. MARUYAMA, T., and N. TAKAHATA, 1982 Numerical studies of the frequency trajectories in the process of fixation of null genes at duplicate loci. Heredity 46: 49-57.
30. MORIZOT, D. C., 1986 Comparative gene mapping evidence for chromosome duplications in chordate evolution. Isozyme Bull. 19: 9-10.
31. NADEAU, J. H., 1991 Genome duplication and comparative gene mapping, pp. 269-296 in Advanced Techniques in Chromosome Research, edited by K. T. ADOLPH. Marcel Dekker, New York.
32. OHNO, S., 1970 Evolution by Gene Duplication. Springer Verlag, New York.
33. OHNO, S., U. WOLF and N. B. ATKJN, 1968 Evolution from fish to mammals by gene duplication. Hereditas 59: 169-187.
34. OHTA, T., 1980 Evolution and variation of multigene families. Lect. Notes Biomath. 37: 1-131.
35. OHTA, T., 1988 Evolution by gene duplication and compensatory advantageous mutations. Genetics 120: 841-847.
36. SAGE, R. D., 1981 Wild mice, pp. 40-90 in The Mouse in Biomedical Research, Vol. 1, History, Genetics and Wild Mice, edited by H. L. FOSTER, J. D. SMALL and J. G. Fox. Academic Press, New York.
37. SHARMAN, A. C., and P. W. H. HOLLAND, 1996 Conservation, duplication, and divergence of developmental genes during chordate evolution. Netherl. J. Zool. 46: 47-67.
38. TAKAHATA, N., and T. MARUYAMA, 1979 Polymorphism and loss of duplicate gene expression: a theoretical study with application to tetraploid fish. Proc. Natl. Acad. Sci. USA 76: 4521-4525.
39. TARTOF, K. D., 1975 Redundant genes. Annu. Rev. Genet. 9: 355-385.
40. WAGNER, A., 1994 Evolution of gene networks by gene duplications: a mathematical model and its implications on genome organization. Proc. Natl. Acad. Sci. USA 91: 4387-4391.
41. WAGNER, A., 1996 Genetic redundancy caused by gene duplications and its evolution in networks of transcriptional regulators. Biol. Cybern. 74: 557-567.
42. WALSH, J. B., 1995 How often do duplicated genes evolve new functions? Genetics 139: 421-428.
43. WATTERSON, G. A., 1983 On the time for gene silencing at duplicate loci. Genetics 105: 745-766.
44. WEINER, A. M., P. L. DEININGER and A. EFSTRADIATIS, 1986 Nonviral retrotransposons: genes, pseudogenes, and transposable elemants generated by the reverse flow of genetic information. Annu. Rev. Genet. 55: 631-661.