Identification of new targets of Drosophila pre-mRNA adenosine deaminase

Physiological Genomics

Volumn 20, Issue , 2005, Pages 195-202

  Xia, Shuli ^a   Yang, Jinghua ^a   Su, Yingjen ^a   Qian, Jiang ^a   Ma, Enbo ^b   Haddad, Gabriel G ^a,c  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

A to I RNA editing; dADAR; dADAR target; Drosophila adenosine deaminase acting on RNA; Microarray

Indexed keywords

ADENOSINE DEAMINASE; ADENOSINE DEAMINASE ACTING ON RNA; COMPLEMENTARY DNA; INOSINE; INSECT PROTEIN; MESSENGER RNA; MESSENGER RNA PRECURSOR; POLYCLONAL ANTIBODY; UNCLASSIFIED DRUG;

ANTIBODY AFFINITY; ANTIBODY SPECIFICITY; ARTICLE; DNA MICROARRAY; DROSOPHILA; ENZYME SUBSTRATE; GENE AMPLIFICATION; GENE MUTATION; GENE SEQUENCE; GENOME; INSECT GENETICS; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN TARGETING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EDITING; RNA HYBRIDIZATION; RNA PURIFICATION; RNA SEQUENCE; WILD TYPE;

ADENOSINE DEAMINASE; ALTERNATIVE SPLICING; ANIMALS; BINDING SITES; CHROMATOGRAPHY, AFFINITY; CROSSES, GENETIC; DNA, COMPLEMENTARY; DROSOPHILA; DROSOPHILA PROTEINS; GENES, INSECT; INOSINE; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA EDITING; RNA PRECURSORS; RNA, HETEROGENEOUS NUCLEAR; RNA, MESSENGER;

EID: 15244344826     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00093.2003     Document Type: Article

References (37)

1. Bass BL. RNA editing and hypermutation by adenosine deamination. Trends Biochem Sci 22: 157-162, 1997.
2. Bass BL. RNA editing by adenosine deaminases that act on RNA. Annu Rev Biochem 71: 817-846, 2002.
3. Bass BL, Nishikura K, Keller W, Seeburg PH, Emeson RB, O'Connell MA, Samuel CE, and Herbert A. A standardized nomenclature for adenosine deaminases that act on RNA. RNA 3: 947-949, 1997.
4. Baugh LR, Hill AA, Brown EL, and Hunter CP. Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29: E29, 2001.
5. Benne R, Van den Burg J, Brakenhoff JP, Sloof P, Van Boom JH, and Troznp MC. Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell 46: 819-826, 1986.
6. Burns CM, Chu H, Rueter SM, Hutchinson LK, Canton H, Sanders-Bush E, and Emeson RB. Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature 387: 303-308, 1997.
7. 2+ permeability of unedited and edited versions of the kainate selective glutamate receptor GluR6. Proc Natl Acad Sci USA 90: 755-759, 1993.
8. Gott JM and Emeson RB. Functions and mechanisms of RNA editing. Annu Rev Genet 34: 499-531, 2000.
9. Grauso M, Reenan RA, Culetto E, and Sattelle DB. Novel putative nicotinic acetylcholine receptor subunit genes, Dα5, Dα6 and Dα7, in Drosophila melanogaster identify a new and highly conserved target of adenosine deaminase acting on RNA-mediated A-to-I pre-mRNA editing. Genetics 160: 1519-1533, 2002.
10. Haddad GG, Sun Y, Wyman BJ, and Xu T. Genetic basis of tolerance to O2 deprivation in Drosophila melanogaster. Proc Natl Acad Sci USA 94: 10809-10812, 1997.
11. Higuchi M, Maas S, Single FN, Hartner J, Rozov A, Burnashev N, Feldmeyer D, Sprengel R, and Seeburg PH. Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2. Nature 406: 78-81, 2000.
12. Higuchi M, Single FN, Kohler M, Sommer B, Sprengel R, and Seeburg PH. RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell 75: 1361-1370, 1993.
13. Hoskins RA, Phan AC, Naeemuddin M, Mapa FA, Ruddy DA, Ryan JJ, Young LM, Wells T, Kopczynski C, and Ellis MC. Single nucleotide polymorphism markers for genetic mapping in Drosophila melanogaster. Genome Res 11: 1100-1113, 2001.
14. Kim U, Wang Y, Sanford T, Zeng Y, and Nishikura K. Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing. Proc Natl Acad Sci USA 91: 11457-11461, 1994.
15. Lai F, Chen CX, Carter KC, and Nishikura K. Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases. Mol Cell Biol 17: 2413-2424, 1997.
16. 2+ permeability. J Neurosci 21: 4572-4581, 2001.
17. Lomeli H, Mosbacher J, Melcher T, Hoger T, Geiger JR, Kuner T, Monyer H, Higuchi M, Bach A, and Seeburg PH. Control of kinetic properties of AMPA receptor channels by nuclear RNA editing. Science 266: 1709-1713, 1994.
18. 2 deprivation in Drosophila melanogaster. J Clin Invest 107: 685-693, 2001.
19. Maas S and Rich A. Changing genetic information through RNA editing. Bioessays 22: 790-802, 2000.
20. Morse DP, Aruscavage PJ, and Bass BL. RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. Proc Natl Acad Sci USA 99: 7906-7911, 2002.
21. Morse DP and Bass BL. Detection of inosine in messenger RNA by inosine-specific cleavage. Biochemistry 36: 8429-8434, 1997.
22. Morse DP and Bass BL. Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA. Proc Natl Acad Sci USA 96: 6048-6053, 1999.
23. O'Connell MA, Krause S, Higuchi M, Hsuan JJ, Totty NF, Jenny A, and Keller W. Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase. Mol Cell Biol 15: 1389-1397, 1995.
24. Palladino MJ, Keegan LP, O'Connell MA, and Reenan RA. A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity. Cell 102: 437-449, 2000.
25. Paul MS and Bass BL. Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J 17: 1120-1127, 1998.
26. Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, Donaldson MA, Nickerson DA, and Boyce-Jacino M. Mining SNPs from EST databases. Genome Res 9: 167-174, 1999.
27. Powell LM, Wallis SC, Pease RJ, Edwards YH, Knott TJ, and Scott J. A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine. Cell 50: 831-840, 1987.
28. Reenan RA. The RNA world meets behavior: A→I pre-mRNA editing in animals. Trends Genet 17: 53-56, 2001.
29. + channel transcript in a region of RNA editing. Neuron 25: 139-149, 2000.
30. Simpson L, Thiemann OH, Savill NJ, Alfonzo JD, and Maslov DA. Evolution of RNA editing in trypanosome mitochondria. Proc Natl Acad Sci USA 97: 6986-6993, 2000.
31. Smith LA, Peixoto AA, and Hall JC. RNA editing in the Drosophila DMCA1A calcium-channel alpha 1 subunit transcript. J Neurogenet 12: 227-240, 1998.
32. Stapleton M, Carlson J, Brokstein P, Yu C, Champe M, George R, Guarin H, Kronmiller B, Pacleb J, Park S, Wan K, Rubin GM, and Celniker S. A Drosophila full-length cDNA resource. Genome Biol 3: RESEARCH0080, 2002.
33. Tusher VG, Tibshirani R, and Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98: 5116-5121, 2001.
34. Wang Q, Khillan J, Gadue P, and Nishikura K. Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis. Science 290: 1765-1768, 2000.
35. Yang JH, Sklar P, Axel R, and Maniatis T. Editing of glutamate receptor subunit B pre-mRNA in vitro by site-specific deamination of adenosine. Nature 374: 77-81, 1995.
36. Yang JH, Sklar P, Axel R, and Maniatis T. Purification and characterization of a human RNA adenosine deaminase for glutamate receptor B pre-mRNA editing. Proc Natl Acad Sci USA 94: 4354-4359, 1997.
37. Yang JH, Luo X, Nie Y, Su Y, Zhao Q, Kabir K, Zhang D, and Rabinovici R. Widespread inosine-containing mRNA in lymphocytes regulated by ADAR1 in response to inflammation. Immunology 109: 15-23, 2003.