-
2
-
-
0035575826
-
Brownian dynamics study of an open-state KcsA potassium channel
-
T. W. Allen and S. H. Chung, "Brownian dynamics study of an open-state KcsA potassium channel," Biochim. Biophys. Acta - Biomembrane, vol. 1515, pp. 83-91, 2001.
-
(2001)
Biochim. Biophys. Acta - Biomembrane
, vol.1515
, pp. 83-91
-
-
Allen, T.W.1
Chung, S.H.2
-
3
-
-
15244348681
-
-
Mar.
-
O. S. Andersen, R. Koepell, and B. Roux, IEEE Trans. Nanobiosci., vol. 4, no. 1, Mar. 2005.
-
(2005)
IEEE Trans. Nanobiosci.
, vol.4
, Issue.1
-
-
Andersen, O.S.1
Koepell, R.2
Roux, B.3
-
4
-
-
0036213027
-
Reservoir boundaries in Brownian dynamics simulations of ion channels
-
Apr.
-
B. Corry et al., "Reservoir boundaries in Brownian dynamics simulations of ion channels," Biophys. J., vol. 82, pp. 1975-1984, Apr. 2002.
-
(2002)
Biophys. J.
, vol.82
, pp. 1975-1984
-
-
Corry, B.1
-
5
-
-
0028347833
-
Brownian dynamics study of a multiply occupied cation channel: Application to understanding permeation in potassium channel
-
S. Bek and E. Jakobsson, "Brownian dynamics study of a multiply occupied cation channel: Application to understanding permeation in potassium channel," Biophys. J., vol. 66, pp. 1028-1038, 1994.
-
(1994)
Biophys. J.
, vol.66
, pp. 1028-1038
-
-
Bek, S.1
Jakobsson, E.2
-
6
-
-
0037093650
-
Simulations of ion current realistic models of ion channels: KcsA potassium channel
-
A. Burykin, C. N. Schutz, J. Villa, and A. Warshel, "Simulations of ion current realistic models of ion channels: KcsA potassium channel," Proteins, vol. 47, pp. 265-280, 2002.
-
(2002)
Proteins
, vol.47
, pp. 265-280
-
-
Burykin, A.1
Schutz, C.N.2
Villa, J.3
Warshel, A.4
-
7
-
-
0032545321
-
Structure of the mscl homolog from mycobacterium tuberculosis: A gated mechanosensitive channel
-
O. Chang, R. H. Spencer, A. T. Lee, M. T. Barclay, and D. C. Rees, "Structure of the mscl homolog from mycobacterium tuberculosis: A gated mechanosensitive channel," Science, vol. 282, pp. 2220-2226, 1998.
-
(1998)
Science
, vol.282
, pp. 2220-2226
-
-
Chang, O.1
Spencer, R.H.2
Lee, A.T.3
Barclay, M.T.4
Rees, D.C.5
-
8
-
-
0032708637
-
Permeation of ions across the potassium channel: Brownian dynamics studies
-
S. H. Chung, T. W. Allen, M. Hoyles, and S. Kuyucak, "Permeation of ions across the potassium channel: Brownian dynamics studies," Biophys. J., vol. 77, pp. 2517-2533, 1999.
-
(1999)
Biophys. J.
, vol.77
, pp. 2517-2533
-
-
Chung, S.H.1
Allen, T.W.2
Hoyles, M.3
Kuyucak, S.4
-
9
-
-
0036151669
-
Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations
-
S. H. Chung, T. W. Allen, and S. Kuyucak, "Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations," Biophys. J., vol. 82, pp. 628-645, 2002.
-
(2002)
Biophys. J.
, vol.82
, pp. 628-645
-
-
Chung, S.H.1
Allen, T.W.2
Kuyucak, S.3
-
10
-
-
0037064260
-
Recent advances in ion channel research
-
S. H. Chung and S. Kuyucak, "Recent advances in ion channel research," Biochim. Biophys. Acta, vol. 1565, pp. 267-286, 2002.
-
(2002)
Biochim. Biophys. Acta
, vol.1565
, pp. 267-286
-
-
Chung, S.H.1
Kuyucak, S.2
-
11
-
-
15244344856
-
Poisson-Nernst-Planck theory approach to the calculation of current through biological ion channels
-
Mar.
-
R. D. Coalson, "Poisson-Nernst-Planck theory approach to the calculation of current through biological ion channels," IEEE Trans. Nanobiosci., vol. 4, no. 1, pp. 81-93, Mar. 2005.
-
(2005)
IEEE Trans. Nanobiosci.
, vol.4
, Issue.1
, pp. 81-93
-
-
Coalson, R.D.1
-
12
-
-
1142291714
-
Mechanism of anionic conduction across ClC
-
J. Cohen and K. Schulten, "Mechanism of anionic conduction across ClC," Biophys. J., vol. 86, pp. 836-845, 2004.
-
(2004)
Biophys. J.
, vol.86
, pp. 836-845
-
-
Cohen, J.1
Schulten, K.2
-
13
-
-
0018958019
-
Ionic selectivity, saturation, and block in a K+ -selective channel from sarcoplasmic reticulum
-
R. Coronado, R. L. Rosenberg, and C. Miller, "Ionic selectivity, saturation, and block in a K+ -selective channel from sarcoplasmic reticulum," J. Gen. Physiol., vol. 76, pp. 425-446, 1980.
-
(1980)
J. Gen. Physiol.
, vol.76
, pp. 425-446
-
-
Coronado, R.1
Rosenberg, R.L.2
Miller, C.3
-
14
-
-
1142310688
-
Conduction mechanisms of chloride ions in ClC-type channels
-
B. Corry, M. O'Mara, and S. H. Chung, "Conduction mechanisms of chloride ions in ClC-type channels," Biophys. J., vol. 86, pp. 846-860, 2004.
-
(2004)
Biophys. J.
, vol.86
, pp. 846-860
-
-
Corry, B.1
O'Mara, M.2
Chung, S.H.3
-
15
-
-
0032502286
-
+ channel
-
+ channel," Biochemistry, vol. 37, pp. 3229-3236, 1998.
-
(1998)
Biochemistry
, vol.37
, pp. 3229-3236
-
-
Cuello, L.G.1
Romero, J.G.2
Cortes, D.M.3
Perozo, E.4
-
16
-
-
0032478818
-
+ conduction and selectivity
-
+ conduction and selectivity," Science, vol. 280, pp. 69-77, 1998.
-
(1998)
Science
, vol.280
, pp. 69-77
-
-
Doyle, D.A.1
Cabral, J.M.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
Chait, B.T.7
MacKinnon, R.8
-
17
-
-
0037122805
-
X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity
-
R. Dutzler, E. B. Campbell, M. Cadene, B. T. Chait, and R. MacKinnon, "X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity," Nature, vol. 415, pp. 287-294, 2002.
-
(2002)
Nature
, vol.415
, pp. 287-294
-
-
Dutzler, R.1
Campbell, E.B.2
Cadene, M.3
Chait, B.T.4
MacKinnon, R.5
-
18
-
-
0037418859
-
Gating the selectivity in ClC chloride channels
-
R. Dutzler, E. B. Campbell, and R. MacKinnon, "Gating the selectivity in ClC chloride channels," Science, vol. 300, pp. 108-112, 2003.
-
(2003)
Science
, vol.300
, pp. 108-112
-
-
Dutzler, R.1
Campbell, E.B.2
MacKinnon, R.3
-
19
-
-
0036708445
-
Continuum electrostatics fails to describe ion permeation in the gramicidin channel
-
Sep.
-
S. Edwards, B. Corry, S. Kuyucak, and S. H. Chung, "Continuum electrostatics fails to describe ion permeation in the gramicidin channel," Biophys. J., vol. 83, pp. 1348-1360, Sep. 2002.
-
(2002)
Biophys. J.
, vol.83
, pp. 1348-1360
-
-
Edwards, S.1
Corry, B.2
Kuyucak, S.3
Chung, S.H.4
-
20
-
-
9644301524
-
Stochastic dynamics for molecules with constraints Brownian dynamics of n-alka-lines
-
W. F. van Gunsteren, H. J. Berendsen, and J. A. C. Rullmann, "Stochastic dynamics for molecules with constraints Brownian dynamics of n-alka-lines," Mol. Phys., vol. 44, no. 1, pp. 69-95, 1981.
-
(1981)
Mol. Phys.
, vol.44
, Issue.1
, pp. 69-95
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.2
Rullmann, J.A.C.3
-
21
-
-
0032875483
-
Single streptomyces lividans K+ channels: Functional asymmetries and sidedness of proton activation
-
L. Heginbotham, M. LeMasurier, L. Kolmakova-Partensky, and C. Miller, "Single streptomyces lividans K+ channels: Functional asymmetries and sidedness of proton activation," J. Gen. Physiol., vol. 114, pp. 551-559, 1999.
-
(1999)
J. Gen. Physiol.
, vol.114
, pp. 551-559
-
-
Heginbotham, L.1
LeMasurier, M.2
Kolmakova-Partensky, L.3
Miller, C.4
-
22
-
-
0033884302
-
A grand canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels
-
W. Im, S. Seefeld, and B. Roux, "A grand canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels," Biophys. J., vol. 79, pp. 788-801, 2000.
-
(2000)
Biophys. J.
, vol.79
, pp. 788-801
-
-
Im, W.1
Seefeld, S.2
Roux, B.3
-
23
-
-
0023371196
-
Stochastic theory of ion movement in channels with single-ion occupancy, application to sodium permeation of Gramicidin channels
-
E. Jakobbson and S. W. Chiu, "Stochastic theory of ion movement in channels with single-ion occupancy, application to sodium permeation of Gramicidin channels," Biophys. J., vol. 52, pp. 33-45, 1987.
-
(1987)
Biophys. J.
, vol.52
, pp. 33-45
-
-
Jakobbson, E.1
Chiu, S.W.2
-
24
-
-
15244355046
-
Fifty years of progress in ion channel research
-
Mar.
-
P. C. Jordan, "Fifty years of progress in ion channel research," IEEE Trans. Nanobiosci., vol. 4, no. 1, pp. 1-9, Mar. 2005.
-
(2005)
IEEE Trans. Nanobiosci.
, vol.4
, Issue.1
, pp. 1-9
-
-
Jordan, P.C.1
-
25
-
-
15244347521
-
Semimicroscopic modeling of permeation through ion channels
-
Mar.
-
_, "Semimicroscopic modeling of permeation through ion channels," IEEE Trans. Nanobiosci., vol. 4, no. 1, pp. 94-101, Mar. 2005.
-
(2005)
IEEE Trans. Nanobiosci.
, vol.4
, Issue.1
, pp. 94-101
-
-
-
28
-
-
0035196340
-
Models of permeation in ion channels
-
S. Kuyucak, O. S. Andersen, and S. H. Chung, "Models of permeation in ion channels," in Rep. Prog. Phys., 2001, vol. 64, pp. 1427-1472.
-
(2001)
Rep. Prog. Phys.
, vol.64
, pp. 1427-1472
-
-
Kuyucak, S.1
Andersen, O.S.2
Chung, S.H.3
-
29
-
-
0034855137
-
KcsA: It's a potassium channel
-
M. LeMasurier, L. Heginbotham, and C. Miller, "KcsA: It's a potassium channel," J. Gen. Physiol., vol. 118, pp. 303-313, 2001.
-
(2001)
J. Gen. Physiol.
, vol.118
, pp. 303-313
-
-
LeMasurier, M.1
Heginbotham, L.2
Miller, C.3
-
30
-
-
0034763324
-
Hierarchical approach to predicting permeation in ion channels
-
R. J. Mashl, Y. Tang, J. Schnitzer, and E. Jakobsson, "Hierarchical approach to predicting permeation in ion channels," Biophys. J., vol. 81, pp. 2473-2483, 2001.
-
(2001)
Biophys. J.
, vol.81
, pp. 2473-2483
-
-
Mashl, R.J.1
Tang, Y.2
Schnitzer, J.3
Jakobsson, E.4
-
31
-
-
0032725268
-
Exploring the open pore of the potassium channel from streptomyces lividans
-
D. Meuser, H. Splitt, R. Wagner, and H. Schrempf, "Exploring the open pore of the potassium channel from streptomyces lividans," FEBS Lett., vol. 462, pp. 447-452, 1999.
-
(1999)
FEBS Lett.
, vol.462
, pp. 447-452
-
-
Meuser, D.1
Splitt, H.2
Wagner, R.3
Schrempf, H.4
-
32
-
-
0020440405
-
Open-state substructure of single chloride channels from torpedo electroplax
-
C. Miller, "Open-state substructure of single chloride channels from torpedo electroplax," Philos. Trans. R. Soc. London, vol. B299, pp. 401-411, 1982.
-
(1982)
Philos. Trans. R. Soc. London
, vol.B299
, pp. 401-411
-
-
Miller, C.1
-
33
-
-
1142310684
-
- pores: Electrostatic effects of charged residues
-
- pores: Electrostatic effects of charged residues," Biophys. J., vol. 86, pp. 825-835, 2004.
-
(2004)
Biophys. J.
, vol.86
, pp. 825-835
-
-
Miloshevsky, G.V.1
Jordan, P.C.2
-
35
-
-
15244340198
-
Unique structure and function of chloride transporting ClC proteins
-
Mar.
-
M. Pusch and T. Jentsch, "Unique structure and function of chloride transporting ClC proteins," IEEE Trans. Nanobiosci., vol. 4, no. 1, pp. 49-57, Mar. 2005.
-
(2005)
IEEE Trans. Nanobiosci.
, vol.4
, Issue.1
, pp. 49-57
-
-
Pusch, M.1
Jentsch, T.2
-
36
-
-
4143116650
-
Computational studies of membrane channels
-
B. Roux and K. Schulten, "Computational studies of membrane channels," Structure, vol. 12, pp. 1343-1351, 2004.
-
(2004)
Structure
, vol.12
, pp. 1343-1351
-
-
Roux, B.1
Schulten, K.2
-
37
-
-
15244351990
-
Molecular dynamics simulation approaches to K channels: Conformational flexibility and physiological function
-
Mar.
-
A. Grottesi, C. Domene, S. Haider, and M. S. P. Sansom, "Molecular dynamics simulation approaches to K channels: Conformational flexibility and physiological function," IEEE Trans. Nanobiosci., vol. 4, no. 1, pp. 112-120, Mar. 2005.
-
(2005)
IEEE Trans. Nanobiosci.
, vol.4
, Issue.1
, pp. 112-120
-
-
Grottesi, A.1
Domene, C.2
Haider, S.3
Sansom, M.S.P.4
-
38
-
-
0028841033
-
A prokaryotic potassium ion channel with two predicted transmembrane segment from streptomyces lividans
-
H. Schrempf, O. Schmidt, R. Kümerlen, S. Hinnah, D. Müller, M. Betzler, T. Steinkamp, and R. Wagner, "A prokaryotic potassium ion channel with two predicted transmembrane segment from streptomyces lividans," EMBO J., vol. 14, pp. 5170-5178, 1995.
-
(1995)
EMBO J.
, vol.14
, pp. 5170-5178
-
-
Schrempf, H.1
Schmidt, O.2
Kümerlen, R.3
Hinnah, S.4
Müller, D.5
Betzler, M.6
Steinkamp, T.7
Wagner, R.8
-
39
-
-
51149211502
-
Improved simulation of liquid water by molecular dynamics
-
F. H. Stillinger and A. Rahman, "Improved simulation of liquid water by molecular dynamics," J. Chem. Phys. vol. 60, pp. 1545-1557, 1974.
-
(1974)
J. Chem. Phys.
, vol.60
, pp. 1545-1557
-
-
Stillinger, F.H.1
Rahman, A.2
-
40
-
-
0035705881
-
Simulation approaches to ion channel structure-function relationships
-
D. P. Tieleman, P. C. Biggin, G. R. Smith, and M. S. P. Sansom, "Simulation approaches to ion channel structure-function relationships," Q. Rev. Biophys., vol. 34, pp. 473-561, 2001.
-
(2001)
Q. Rev. Biophys.
, vol.34
, pp. 473-561
-
-
Tieleman, D.P.1
Biggin, P.C.2
Smith, G.R.3
Sansom, M.S.P.4
-
41
-
-
0035499892
-
+ channe-fab complex at 2.0 Å resolution
-
+ channe-fab complex at 2.0 Å resolution," Nature, vol. 414, pp. 43-48, 2005.
-
(2005)
Nature
, vol.414
, pp. 43-48
-
-
Zhou, Y.1
Morals-Cabral, J.H.2
Kaufman, A.3
MacKinnon, R.4
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