-
1
-
-
0001865832
-
DNA strand exchange proteins: A biochemical and physical comparison
-
Bianco,P.R., Tracy,R.B. and Kowalczykowski,S.C. (1998) DNA strand exchange proteins: A biochemical and physical comparison. [i#Front. Biosci.#1i], [b#3#1b], D570-D603.
-
(1998)
Front. Biosci.
, vol.3
-
-
Bianco, P.R.1
Tracy, R.B.2
Kowalczykowski, S.C.3
-
2
-
-
0035997347
-
The bacterial RecA protein and the recombinational DNA repair of stalled replication forks
-
Lusetti,S.L. and Cox,M.M. (2002) The bacterial RecA protein and the recombinational DNA repair of stalled replication forks. [i#Annu. Rev. Biochem.#1i], [b#71#1b], 71-100.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 71-100
-
-
Lusetti, S.L.1
Cox, M.M.2
-
3
-
-
0038202108
-
Archaeal DNA repair: Paradigms and puzzles
-
White,M.F. (2003) Archaeal DNA repair: Paradigms and puzzles. [i#Biochem. Soc. Trans.#1i], [b#31#1b], 690-693.
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 690-693
-
-
White, M.F.1
-
4
-
-
0032079749
-
RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange
-
Seitz,E.M., Brockman,J.P., Sandler,S.J., Clark,A.J. and Kowalczykowski,S.C. (1998) RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange. [i#Genes Dev.#1i], [b#12#1b], 1248-1253.
-
(1998)
Genes Dev.
, vol.12
, pp. 1248-1253
-
-
Seitz, E.M.1
Brockman, J.P.2
Sandler, S.J.3
Clark, A.J.4
Kowalczykowski, S.C.5
-
5
-
-
0034721873
-
Domain analysis of an archaeal RadA protein for the strand exchange activity
-
Komori,K., Miyata,T., Daiyasu,H., Toh,H., Shinagawa,H. and Ishino,Y. (2000) Domain analysis of an archaeal RadA protein for the strand exchange activity. [i#J. Biol. Chem.#1i], [b#275#1b], 33791-33797.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 33791-33797
-
-
Komori, K.1
Miyata, T.2
Daiyasu, H.3
Toh, H.4
Shinagawa, H.5
Ishino, Y.6
-
6
-
-
0033538424
-
The N-terminal domain of the human Rad51 protein binds DNA: Structure and a DNA binding surface as revealed by NMR
-
Aihara,H., Ito,Y., Kurumizaka,H., Yokoyama,S. and Shibata,T. (1999) The N-terminal domain of the human Rad51 protein binds DNA: Structure and a DNA binding surface as revealed by NMR. [i#J. Mol. Biol.#1i], [b#290#1b], 495-504.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 495-504
-
-
Aihara, H.1
Ito, Y.2
Kurumizaka, H.3
Yokoyama, S.4
Shibata, T.5
-
7
-
-
0023008741
-
Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP
-
Egelman,E.H. and Stasiak,A. (1986) Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP. [i#J. Mol. Biol.#1i], [b#191#1b], 677-697.
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 677-697
-
-
Egelman, E.H.1
Stasiak, A.2
-
8
-
-
0026666652
-
Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible
-
Yu,X. and Egelman,E.H. (1992) Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible. [i#J. Mol. Biol.#1i], [b#227#1b], 334-346.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 334-346
-
-
Yu, X.1
Egelman, E.H.2
-
9
-
-
0034671684
-
Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AIF(4): Implications for decreased ATPase activity and molecular aggregation
-
Datta,S., Prabu,M.M., Vaze,M.B., Ganesh,N., Chandra,N.R., Muniyappa,K. and Vijayan,M. (2000) Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AIF(4): Implications for decreased ATPase activity and molecular aggregation. [i#Nucleic Acids Res.#1i], [b#28#1b], 4964-4973.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4964-4973
-
-
Datta, S.1
Prabu, M.M.2
Vaze, M.B.3
Ganesh, N.4
Chandra, N.R.5
Muniyappa, K.6
Vijayan, M.7
-
10
-
-
0038153902
-
Crystal structures of Mycobacterium smegmatis RecA and its nucleotide complexes
-
Datta,S., Krishna,R., Ganesh,N., Chandra,N.R., Muniyappa,K. and Vijayan,M. (2003) Crystal structures of [i#Mycobacterium smegmatis#1i] RecA and its nucleotide complexes. [i#J. Bacteriol.#1i], [b#185#1b], 4280-4284.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4280-4284
-
-
Datta, S.1
Krishna, R.2
Ganesh, N.3
Chandra, N.R.4
Muniyappa, K.5
Vijayan, M.6
-
11
-
-
4444308700
-
Crystal structures of Escherichia coli RecA in a compressed helical filament
-
Xing,X. and Bell,C.E. (2004) Crystal structures of [i#Escherichia coli#1i] RecA in a compressed helical filament. [i#J. Mol. Biol.#1i], [b#342#1b] 1471-1485.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1471-1485
-
-
Xing, X.1
Bell, C.E.2
-
12
-
-
8544258063
-
Crystal structure of RecA from Deinococcus radiodurans: Insights into the structural basis of extreme radioresistance
-
Rajan,R. and Bell,C.E. (2004) Crystal structure of RecA from [i#Deinococcus radiodurans#1i]: Insights into the structural basis of extreme radioresistance. [i#J. Mol. Biol.#1i], [b#344#1b], 951-963.
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 951-963
-
-
Rajan, R.1
Bell, C.E.2
-
13
-
-
0026500416
-
The structure of the E.coli recA protein monomer and polymer
-
Story,R.M., Weber,I.T. and Steitz,T.A. (1992) The structure of the [i#E.coli#1i] recA protein monomer and polymer. [i#Nature#1i], [b#355#1b], 318-325.
-
(1992)
Nature
, vol.355
, pp. 318-325
-
-
Story, R.M.1
Weber, I.T.2
Steitz, T.A.3
-
14
-
-
0031013231
-
The RecA hexamer is a structural homologue of ring helicases
-
Yu,X. and Egelman,E.H. (1997) The RecA hexamer is a structural homologue of ring helicases. [i#Nature Struct. Biol.#1i], [b#4#1b], 101-104.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 101-104
-
-
Yu, X.1
Egelman, E.H.2
-
15
-
-
3543041245
-
Crystal structure of a Rad51 filament
-
Conway,A.B., Lynch,T.W., Zhang,Y., Fortin,G.S., Fung,C.W., Symington,L.S. and Rice,P.A. (2004) Crystal structure of a Rad51 filament. [i#Nature Struct. Mol. Biol.#1i], [b#11#1b], 791-796.
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 791-796
-
-
Conway, A.B.1
Lynch, T.W.2
Zhang, Y.3
Fortin, G.S.4
Fung, C.W.5
Symington, L.S.6
Rice, P.A.7
-
16
-
-
0035902614
-
Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA
-
Yu,X., Jacobs,S.A., West,S.C., Ogawa,T. and Egelman,E.H. (2001) Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA. [i#Proc. Natl Acad. Sci. USA#1i], [b#98#1b], 8419-8424.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 8419-8424
-
-
Yu, X.1
Jacobs, S.A.2
West, S.C.3
Ogawa, T.4
Egelman, E.H.5
-
17
-
-
0032828490
-
Human Dmc1 protein binds DNA as an octameric ring
-
Passy,S.I., Yu,X., Li,Z., Radding,C.M., Masson,J.Y., West,S.C. and Egelman,E.H. (1999) Human Dmc1 protein binds DNA as an octameric ring. [i#Proc. Natl Acad. Sci. USA#1i], [b#96#1b], 10684-10688.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 10684-10688
-
-
Passy, S.I.1
Yu, X.2
Li, Z.3
Radding, C.M.4
Masson, J.Y.5
West, S.C.6
Egelman, E.H.7
-
18
-
-
2342466755
-
Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1
-
Kinebuchi,T., Kagawa,W., Enomoto,R., Tanaka,K., Miyagawa,K., Shibata,T., Kurumizaka,H. and Yokoyama,S. (2004) Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1. [i#Mol. Cell#1i], [b#14#1b], 363-374.
-
(2004)
Mol. Cell
, vol.14
, pp. 363-374
-
-
Kinebuchi, T.1
Kagawa, W.2
Enomoto, R.3
Tanaka, K.4
Miyagawa, K.5
Shibata, T.6
Kurumizaka, H.7
Yokoyama, S.8
-
19
-
-
2642537689
-
Human meiotic recombinase Dmc1 promotes ATP-dependent homologous DNA strand exchange
-
Sehorn,M.G., Sigurdsson,S., Bussen,W., Unger,V.M. and Sung,P. (2004) Human meiotic recombinase Dmc1 promotes ATP-dependent homologous DNA strand exchange. [i#Nature#1i], [b#429#1b], 433-437.
-
(2004)
Nature
, vol.429
, pp. 433-437
-
-
Sehorn, M.G.1
Sigurdsson, S.2
Bussen, W.3
Unger, V.M.4
Sung, P.5
-
20
-
-
0035890601
-
RadA protein from Archaeoglobus fulgidus forms rings, nucleoprotein filaments and catalyses homologous recombination
-
McIlwraith,M.J., Hall,D.R., Stasiak,A.Z., Stasiak,A., Wigley,D.B. and West,S.C. (2001) RadA protein from [i#Archaeoglobus fulgidus#1i] forms rings, nucleoprotein filaments and catalyses homologous recombination. [i#Nucleic Acids Res.#1i], [b#29#1b], 4509-4517.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4509-4517
-
-
McIlwraith, M.J.1
Hall, D.R.2
Stasiak, A.Z.3
Stasiak, A.4
Wigley, D.B.5
West, S.C.6
-
21
-
-
0035861994
-
Archaeal RadA protein binds DNA as both helical filaments and octameric rings
-
Yang,S., Yu,X., Seitz,E.M., Kowalczykowski,S.C. and Egelman,E.H. (2001) Archaeal RadA protein binds DNA as both helical filaments and octameric rings. [i#J. Mol. Biol.#1i], [b#314#1b], 1077-1085.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1077-1085
-
-
Yang, S.1
Yu, X.2
Seitz, E.M.3
Kowalczykowski, S.C.4
Egelman, E.H.5
-
22
-
-
4143068081
-
Crystal structure of archaeal recombinase RadA: A snapshot of its extended conformation
-
Wu,Y., He,Y., Moya,I.A., Qian,X. and Luo,Y. (2004) Crystal structure of archaeal recombinase RadA: A snapshot of its extended conformation. [i#Mol. Cell#1i], [b#15#1b], 423-435.
-
(2004)
Mol. Cell
, vol.15
, pp. 423-435
-
-
Wu, Y.1
He, Y.2
Moya, I.A.3
Qian, X.4
Luo, Y.5
-
23
-
-
0042738069
-
Full-length archaeal Rad51 structure and mutants: Mechanisms for Rad51 assembly and control by BRCA2
-
Shin,D.S., Pellegrini,L., Daniels,D.S., Yelent,B., Craig,L., Bates,D., Yu,D.S., Shivji,M.K., Hitomi,C., Arvai,A.S. [i#et al.#1i] (2003) Full-length archaeal Rad51 structure and mutants: Mechanisms for Rad51 assembly and control by BRCA2. [i#EMBO J.#1i], [b#22#1b], 4566-4576.
-
(2003)
EMBO J.
, vol.22
, pp. 4566-4576
-
-
Shin, D.S.1
Pellegrini, L.2
Daniels, D.S.3
Yelent, B.4
Craig, L.5
Bates, D.6
Yu, D.S.7
Shivji, M.K.8
Hitomi, C.9
Arvai, A.S.10
-
24
-
-
3242886313
-
Homologous recombination-mediated double-strand break repair
-
Wyman,C., Ristic,D. and Kanaar,R. (2004) Homologous recombination-mediated double-strand break repair. [i#DNA Repair (Amst. #1i] [b#3#1b], 827-833.
-
(2004)
DNA Repair (Amst.)
, vol.3
, pp. 827-833
-
-
Wyman, C.1
Ristic, D.2
Kanaar, R.3
-
25
-
-
2242443513
-
Insights into DNA recombination from the structure of a Rad51-BRCA2 complex
-
Pellegrini,L., Yu,D.S., Lo,T., Anand,S., Lee,M., Blundell,T.L. and Venkitaraman,A.R. (2002) Insights into DNA recombination from the structure of a Rad51-BRCA2 complex. [i#Nature#1i], [b#420#1b], 287-293.
-
(2002)
Nature
, vol.420
, pp. 287-293
-
-
Pellegrini, L.1
Yu, D.S.2
Lo, T.3
Anand, S.4
Lee, M.5
Blundell, T.L.6
Venkitaraman, A.R.7
-
26
-
-
0035893365
-
Identification and purification of two distinct complexes containing the five Rad51 paralogs
-
Masson,J.Y., Tarsounas,M.C., Stasiak,A.Z., Stasiak,A., Shah,R., McIlwraith,M.J., Benson,F.E. and West,S.C. (2001) Identification and purification of two distinct complexes containing the five Rad51 paralogs. [i#Genes Dev.#1i], [b#15#1b], 3296-3307.
-
(2001)
Genes Dev.
, vol.15
, pp. 3296-3307
-
-
Masson, J.Y.1
Tarsounas, M.C.2
Stasiak, A.Z.3
Stasiak, A.4
Shah, R.5
McIlwraith, M.J.6
Benson, F.E.7
West, S.C.8
-
27
-
-
1242275403
-
Domain mapping of the Rad51 paralog protein complexes
-
Miller,K.A., Sawicka,D., Barsky,D. and Albala,J.S. (2004) Domain mapping of the Rad51 paralog protein complexes. [i#Nucleic Acids Res.#1i], [b#32#1b] 169-178.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 169-178
-
-
Miller, K.A.1
Sawicka, D.2
Barsky, D.3
Albala, J.S.4
-
28
-
-
0346340054
-
Rad51C is required for Holliday junction processing in mammalian cells
-
Liu,Y., Masson,J.Y., Shah,R., O'Regan,P. and West,S.C. (2004) Rad51C is required for Holliday junction processing in mammalian cells. [i#Science#1i] [b#303#1b], 243-246.
-
(2004)
Science
, vol.303
, pp. 243-246
-
-
Liu, Y.1
Masson, J.Y.2
Shah, R.3
O'Regan, P.4
West, S.C.5
-
29
-
-
4544289542
-
Self-polymerization of archaeal RadA protein into long and fine helical filaments
-
Lee,M.H., Leng,C.H., Chang,Y.C., Chou,C.C., Chen,Y.K., Hsu,F.F., Chang,C.S., Wang,A.H. and Wang,T.F. (2004) Self-polymerization of archaeal RadA protein into long and fine helical filaments. [i#Biochem. Biophys. Res. Commun.#1i], [b#323#1b], 845-851.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.323
, pp. 845-851
-
-
Lee, M.H.1
Leng, C.H.2
Chang, Y.C.3
Chou, C.C.4
Chen, Y.K.5
Hsu, F.F.6
Chang, C.S.7
Wang, A.H.8
Wang, T.F.9
-
30
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews,B.W. (1968) Solvent content of protein crystals. [i#J. Mol. Biol.#1i], [b#33#1b], 491-497.
-
(1968)
J. Mol. Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
31
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project,N
-
Collaborative Computational Project,N. (1994), The CCP4 suite: Programs for protein crystallography. [i#Acta Crystallogr. D Biol. Crystallogr.#1i] [b#50#1b], 760-763.
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
33
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones,T.A., Zou,J.Y., Cowan,S.W. and Kjeldgaard,M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. [i#Acta Crystallogr. A#1i], [b#47#1b], 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
34
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley,P. and Cowtan,K. (2004) Coot: Model-building tools for molecular graphics. [i#Acta Crystallogr. D Biol. Crystallogr.#1i], [b#60#1b], 2126-2132.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
35
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P., Grosse-Kunstleve,R.W., Jiang,J.S., Kuszewski,J., Nilges,M., Pannu,N.S. [i#et al.#1i] (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. [i#Acta Crystallogr. D Biol. Crystallogr.#1i], [b#54#1b], 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
36
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski,R.A., MacArthur,M.W., Moss,D.S. and Thornton,J.M. (1993) PROCHECK: A program to check the stereochemical quality of protein structures. [i#J. Appl. Cryst.#1i], [b#26#1b], 283-291.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
37
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein,F.C., Koetzle,T.F., Williams,G.J., Meyer,E.F.,Jr, Brice,M.D., Rodgers,J.R., Kennard,O., Shimanouchi,T. and Tasumi,M. (1977) The Protein Data Bank: A computer-based archival file for macromolecular structures. [i#J. Mol. Biol.#1i], [b#112#1b], 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
38
-
-
0030841589
-
Detecting fold motifs and similarities in protein structures
-
Kleywegt,G.J. and Jones,T.A. (1997) Detecting fold motifs and similarities in protein structures. [i#Methods Enzymol.#1i], [b#277#1b], 525-545.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 525-545
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
39
-
-
0026584599
-
Structure of the recA protein-ADP complex
-
Story,R.M. and Steitz,T.A. (1992) Structure of the recA protein-ADP complex. [i#Nature#1i], [b#355#1b], 374-376.
-
(1992)
Nature
, vol.355
, pp. 374-376
-
-
Story, R.M.1
Steitz, T.A.2
-
40
-
-
0016771835
-
Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2
-
Perutz,M.F. and Raidt,H. (1975) Stereochemical basis of heat stability in bacterial ferredoxins and in haemoglobin A2. [i#Nature#1i], [b#255#1b], 256-259.
-
(1975)
Nature
, vol.255
, pp. 256-259
-
-
Perutz, M.F.1
Raidt, H.2
-
41
-
-
0036931447
-
Toward the physical basis of thermophilic proteins: Linking of enriched polar interactions and reduced heat capacity of unfolding
-
Zhou,H.X. (2002) Toward the physical basis of thermophilic proteins: linking of enriched polar interactions and reduced heat capacity of unfolding. [i#Biophys. J.#1i], [b#93#1b], 3126-3133.
-
(2002)
Biophys. J.
, vol.93
, pp. 3126-3133
-
-
Zhou, H.X.1
-
42
-
-
0037250158
-
InterpreTS: Protein interaction prediction through tertiary structure
-
Aloy,P. and Russell,R.B. (2003) InterpreTS: Protein interaction prediction through tertiary structure. [i#Bioinformatics#1i], [b#19#1b], 161-162.
-
(2003)
Bioinformatics
, vol.19
, pp. 161-162
-
-
Aloy, P.1
Russell, R.B.2
-
44
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. [i#Biopolymers#1i], [b#22#1b], 2577-2637.
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(1983)
Biopolymers
, vol.22
, pp. 2577-2637
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Kabsch, W.1
Sander, C.2
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