-
1
-
-
0033538424
-
The N-terminal domain of the human Rad51 protein binds DNA: Structure and a DNA binding surface as revealed by NMR
-
Aihara H., Ito Y., Kurumizaka H., Yokoyama S., Shibata T. The N-terminal domain of the human Rad51 protein binds DNA. structure and a DNA binding surface as revealed by NMR J. Mol. Biol. 290:1998;495-504
-
(1998)
J. Mol. Biol.
, vol.290
, pp. 495-504
-
-
Aihara, H.1
Ito, Y.2
Kurumizaka, H.3
Yokoyama, S.4
Shibata, T.5
-
2
-
-
0026612756
-
Electrostatic calculations of the pKa values of ionizable groups in Bacteriorhodopsin
-
Bashford D., Gerwert K. Electrostatic calculations of the pKa values of ionizable groups in Bacteriorhodopsin. J. Mol. Biol. 224:1992;473-486
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 473-486
-
-
Bashford, D.1
Gerwert, K.2
-
3
-
-
0030811492
-
Purification of human Rad51 protein by selective spermidine precipitation
-
Baumann P., Benson F.E., Hajibagheri N., West S.C. Purification of human Rad51 protein by selective spermidine precipitation. Mutat. Res. 384:1997;65-72
-
(1997)
Mutat. Res.
, vol.384
, pp. 65-72
-
-
Baumann, P.1
Benson, F.E.2
Hajibagheri, N.3
West, S.C.4
-
4
-
-
0028072098
-
Purification and characterization of the human Rad51 protein, an analogue of E. coli RecA
-
Benson F.E., Stasiak A., West S.C. Purification and characterization of the human Rad51 protein, an analogue of E. coli RecA. EMBO J. 13:1994;5764-5771
-
(1994)
EMBO J.
, vol.13
, pp. 5764-5771
-
-
Benson, F.E.1
Stasiak, A.2
West, S.C.3
-
6
-
-
0026697166
-
DMC1: A meiosis-specific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression
-
Bishop D.K., Park D., Xu L., Kleckner N. DMC1. a meiosis-specific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression Cell. 69:1992;439-456
-
(1992)
Cell
, vol.69
, pp. 439-456
-
-
Bishop, D.K.1
Park, D.2
Xu, L.3
Kleckner, N.4
-
7
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.-S., Kuszewski J., Nilges M., Pannu N.S. Crystallography and NMR system. a new software suite for macromolecular structure determination Acta Crystallogr. D. 54:1998;904-925
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 904-925
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
8
-
-
0028103275
-
Collaborative Computational Project, Number 4) the CCP4 suite: Programs for protein crystallography
-
CCP4 Collaborative Computational Project, Number 4) The CCP4 suite. programs for protein crystallography Acta Crystallogr. D. 50:1994;760-763
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
10
-
-
0029868502
-
The mouse and human homologs of DMC1, the yeast meiosis-specific homologous recombination gene, have a common unique form of exon-skipped transcript in meiosis
-
Habu T., Taki T., West A., Nishimune Y., Morita T. The mouse and human homologs of DMC1, the yeast meiosis-specific homologous recombination gene, have a common unique form of exon-skipped transcript in meiosis. Nucleic Acids Res. 24:1996;470-477
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 470-477
-
-
Habu, T.1
Taki, T.2
West, A.3
Nishimune, Y.4
Morita, T.5
-
11
-
-
0024843435
-
Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy
-
Heuser J., Griffith J. Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy. J. Mol. Biol. 210:1989;473-484
-
(1989)
J. Mol. Biol.
, vol.210
, pp. 473-484
-
-
Heuser, J.1
Griffith, J.2
-
12
-
-
0035834743
-
Saccharomyces cerevisiae Dmc1 protein promotes renaturation of single-strand DNA (ssDNA) and assimilation of ssDNA into homologous super-coiled duplex DNA
-
Hong E.L., Shinohara A., Bishop D.K. Saccharomyces cerevisiae Dmc1 protein promotes renaturation of single-strand DNA (ssDNA) and assimilation of ssDNA into homologous super-coiled duplex DNA. J. Biol. Chem. 276:2001;41906-41912
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 41906-41912
-
-
Hong, E.L.1
Shinohara, A.2
Bishop, D.K.3
-
13
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.-Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A. 47:1991;110-119
-
(1991)
Acta Crystallogr. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
14
-
-
0035860750
-
Homologous pairing promoted by the human Rad52 protein
-
Kagawa W., Kurumizaka H., Ikawa S., Yokoyama S., Shibata T. Homologous pairing promoted by the human Rad52 protein. J. Biol. Chem. 276:2001;35201-35208
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 35201-35208
-
-
Kagawa, W.1
Kurumizaka, H.2
Ikawa, S.3
Yokoyama, S.4
Shibata, T.5
-
15
-
-
0036671363
-
Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form
-
Kagawa W., Kurmizaka H., Ishitani R., Fukai S., Nureki O., Shibata T., Yokoyama S. Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form. Mol. Cell. 10:2002;359-371
-
(2002)
Mol. Cell
, vol.10
, pp. 359-371
-
-
Kagawa, W.1
Kurmizaka, H.2
Ishitani, R.3
Fukai, S.4
Nureki, O.5
Shibata, T.6
Yokoyama, S.7
-
16
-
-
0029775620
-
Meiosis: How could it work?
-
Kleckner N. Meiosis. how could it work? Proc. Natl. Acad. Sci. USA. 93:1996;8167-8174
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8167-8174
-
-
Kleckner, N.1
-
17
-
-
0034721803
-
Both RadA and RadB are involved in homologous recombination in Pyrococcus furiosus
-
Komori K., Miyata T., DiRuggiero J., Holley-Shanks R., Hayashi I., Cann I.K.O., Mayanagi K., Shinagawa H., Ishino Y. Both RadA and RadB are involved in homologous recombination in Pyrococcus furiosus. J. Biol. Chem. 275:2000;33782-33790
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 33782-33790
-
-
Komori, K.1
Miyata, T.2
Diruggiero, J.3
Holley-Shanks, R.4
Hayashi, I.5
Cann, I.K.O.6
Mayanagi, K.7
Shinagawa, H.8
Ishino, Y.9
-
18
-
-
0030764984
-
Recombination activities of HsDmc1 protein, the meiotic human homolog of RecA protein
-
Li Z., Golub E.I., Gupta R., Radding C.M. Recombination activities of HsDmc1 protein, the meiotic human homolog of RecA protein. Proc. Natl. Acad. Sci. USA. 94:1997;11221-11226
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11221-11226
-
-
Li, Z.1
Golub, E.I.2
Gupta, R.3
Radding, C.M.4
-
19
-
-
0038700763
-
Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen
-
Li D., Zhao R., Lilyestrom W., Gai D., Zhang R., DeCaprio J.A., Fanning E., Jochimiak J., Szakonyl G., Chen X.S. Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. Nature. 423:2003;512-518
-
(2003)
Nature
, vol.423
, pp. 512-518
-
-
Li, D.1
Zhao, R.2
Lilyestrom, W.3
Gai, D.4
Zhang, R.5
Decaprio, J.A.6
Fanning, E.7
Jochimiak, J.8
Szakonyl, G.9
Chen, X.S.10
-
20
-
-
0035789518
-
Gromacs 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E., Hess B., van der Spoel D. Gromacs 3.0. a package for molecular simulation and trajectory analysis J. Mol. Mod. 7:2001;306-317
-
(2001)
J. Mol. Mod.
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
21
-
-
0035252918
-
The Rad51 and Dmc1 recombinases: A non-identical twin relationship
-
Masson J.Y., West S.C. The Rad51 and Dmc1 recombinases. a non-identical twin relationship Trends Biochem. Sci. 26:2001;131-136
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 131-136
-
-
Masson, J.Y.1
West, S.C.2
-
22
-
-
0033571226
-
The meiosis-specific recombinase hDmc1 forms ring structures and interacts with hRad51
-
Masson J.Y., Davies A.A., Hajibagheri N., Van Dyck E., Benson F.E., Stasiak A.Z., Stasiak A., West S.C. The meiosis-specific recombinase hDmc1 forms ring structures and interacts with hRad51. EMBO J. 18:1999;6552-6560
-
(1999)
EMBO J.
, vol.18
, pp. 6552-6560
-
-
Masson, J.Y.1
Davies, A.A.2
Hajibagheri, N.3
Van Dyck, E.4
Benson, F.E.5
Stasiak, A.Z.6
Stasiak, A.7
West, S.C.8
-
23
-
-
0033792010
-
Two different oligomeric states of the RuvB branch migration motor protein as revealed by electron microscopy
-
Miyata T., Yamada K., Iwasaki H., Shinagawa H., Morikawa K., Mayanagi K. Two different oligomeric states of the RuvB branch migration motor protein as revealed by electron microscopy. J. Struct. Biol. 131:2000;83-89
-
(2000)
J. Struct. Biol.
, vol.131
, pp. 83-89
-
-
Miyata, T.1
Yamada, K.2
Iwasaki, H.3
Shinagawa, H.4
Morikawa, K.5
Mayanagi, K.6
-
24
-
-
0030998268
-
An extended DNA structure through deoxyribose-base stacking induced by RecA protein
-
Nishinaka T., Ito Y., Yokoyama S., Shibata S. An extended DNA structure through deoxyribose-base stacking induced by RecA protein. Proc. Natl. Acad. Sci. USA. 94:1997;6623-6628
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6623-6628
-
-
Nishinaka, T.1
Ito, Y.2
Yokoyama, S.3
Shibata, S.4
-
25
-
-
0027167689
-
Similarity of the yeast RAD51 filament to the bacterial RecA filament
-
Ogawa T., Yu X., Shinohara A., Egelman E.H. Similarity of the yeast RAD51 filament to the bacterial RecA filament. Science. 26:1993;1896-1899
-
(1993)
Science
, vol.26
, pp. 1896-1899
-
-
Ogawa, T.1
Yu, X.2
Shinohara, A.3
Egelman, E.H.4
-
26
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
27
-
-
0032828490
-
Human Dmc1 protein binds DNA as an octameric ring
-
Passy S.I., Yu X., Li Z., Radding C.M., Masson J.Y., West S.C., Egelman E.H. Human Dmc1 protein binds DNA as an octameric ring. Proc. Natl. Acad. Sci. USA. 96:1999;10684-10688
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10684-10688
-
-
Passy, S.I.1
Yu, X.2
Li, Z.3
Radding, C.M.4
Masson, J.Y.5
West, S.C.6
Egelman, E.H.7
-
28
-
-
2242443513
-
Insights into DNA recombination from the structure of a RAD51-BRCA2 complex
-
Pellegrini L., Yu D.S., Lo T., Anand S., Lee M., Blundell T.L., Venkitaraman A.R. Insights into DNA recombination from the structure of a RAD51-BRCA2 complex. Nature. 420:2002;287-293
-
(2002)
Nature
, vol.420
, pp. 287-293
-
-
Pellegrini, L.1
Yu, D.S.2
Lo, T.3
Anand, S.4
Lee, M.5
Blundell, T.L.6
Venkitaraman, A.R.7
-
29
-
-
0032039077
-
Meiotic prophase arrest with failure of chromosome synapsis in mice deficient for Dmc1, a germline-specific RecA homolog
-
Pittman D.L., Cobb J., Schimenti K.J., Wilson L.A., Cooper D.M., Brignull E., Handel M.A., Schimenti J.C. Meiotic prophase arrest with failure of chromosome synapsis in mice deficient for Dmc1, a germline-specific RecA homolog. Mol. Cell. 1:1998;697-705
-
(1998)
Mol. Cell
, vol.1
, pp. 697-705
-
-
Pittman, D.L.1
Cobb, J.2
Schimenti, K.J.3
Wilson, L.A.4
Cooper, D.M.5
Brignull, E.6
Handel, M.A.7
Schimenti, J.C.8
-
30
-
-
0030767256
-
Meiotic chromosomes: It takes two to tango
-
Roeder G.S. Meiotic chromosomes. it takes two to tango Genes Dev. 11:1997;2600-2621
-
(1997)
Genes Dev.
, vol.11
, pp. 2600-2621
-
-
Roeder, G.S.1
-
31
-
-
0032716810
-
Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7
-
Sawaya M.R., Guo S., Tabor S., Richardson C.C., Ellenberger T. Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7. Cell. 99:1999;167-177
-
(1999)
Cell
, vol.99
, pp. 167-177
-
-
Sawaya, M.R.1
Guo, S.2
Tabor, S.3
Richardson, C.C.4
Ellenberger, T.5
-
32
-
-
0032079749
-
RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange
-
Seitz E.M., Brockman J.P., Sandler S.J., Clark A.J., Kowalczykowski S.C. RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand exchange. Genes Dev. 12:1998;1248-1253
-
(1998)
Genes Dev.
, vol.12
, pp. 1248-1253
-
-
Seitz, E.M.1
Brockman, J.P.2
Sandler, S.J.3
Clark, A.J.4
Kowalczykowski, S.C.5
-
33
-
-
0042738069
-
Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2
-
Shin D.S., Pellegrini L., Daniels D.S., Yelent B., Craig L., Bates D., Yu D.S., Shivji M.K., Hitomi C., Arvai A.S., et al. Full-length archaeal Rad51 structure and mutants. mechanisms for RAD51 assembly and control by BRCA2 EMBO J. 22:2003;4566-4576
-
(2003)
EMBO J.
, vol.22
, pp. 4566-4576
-
-
Shin, D.S.1
Pellegrini, L.2
Daniels, D.S.3
Yelent, B.4
Craig, L.5
Bates, D.6
Yu, D.S.7
Shivji, M.K.8
Hitomi, C.9
Arvai, A.S.10
-
34
-
-
0034625236
-
Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides
-
Singleton M.R., Sawaya M.R., Ellenberger T., Wigley D.B. Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides. Cell. 101:2000;589-600
-
(2000)
Cell
, vol.101
, pp. 589-600
-
-
Singleton, M.R.1
Sawaya, M.R.2
Ellenberger, T.3
Wigley, D.B.4
-
35
-
-
0037108889
-
Structure of the single-strand annealing domain of human RAD52 protein
-
Singleton M.R., Wentzell L.M., Liu Y., West S.C., Wigley D.B. Structure of the single-strand annealing domain of human RAD52 protein. Proc. Natl. Acad. Sci. USA. 99:2002;13492-13497
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 13492-13497
-
-
Singleton, M.R.1
Wentzell, L.M.2
Liu, Y.3
West, S.C.4
Wigley, D.B.5
-
36
-
-
0033952524
-
The RadA protein from a hyperthermophilic archaeon Pyrobaculum islandicum is a DNA-dependent ATPase that exhibits two disparate catalytic modes, with a transition temperature at 75 degrees C
-
Spies M., Kil Y., Masui R., Kato R., Kujo C., Ohshima T., Kuramitsu S., Lanzov V. The RadA protein from a hyperthermophilic archaeon Pyrobaculum islandicum is a DNA-dependent ATPase that exhibits two disparate catalytic modes, with a transition temperature at 75 degrees C. Eur. J. Biochem. 267:2000;1125-1137
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 1125-1137
-
-
Spies, M.1
Kil, Y.2
Masui, R.3
Kato, R.4
Kujo, C.5
Ohshima, T.6
Kuramitsu, S.7
Lanzov, V.8
-
37
-
-
0019888429
-
Elongation of duplex DNA by recA protein
-
Stasiak A., DiCapua E., Koller T. Elongation of duplex DNA by recA protein. J. Mol. Biol. 151:1981;557-564
-
(1981)
J. Mol. Biol.
, vol.151
, pp. 557-564
-
-
Stasiak, A.1
Dicapua, E.2
Koller, T.3
-
38
-
-
0020478259
-
The helicity of DNA in complexes with recA protein
-
Stasiak A., DiCapua E. The helicity of DNA in complexes with recA protein. Nature. 299:1982;185-186
-
(1982)
Nature
, vol.299
, pp. 185-186
-
-
Stasiak, A.1
Dicapua, E.2
-
39
-
-
0021646247
-
Visualization of RecA-DNA complexes involved in consecutive stages of an in vitro strand exchange reaction
-
Stasiak A., Stasiak Z., Koller T. Visualization of RecA-DNA complexes involved in consecutive stages of an in vitro strand exchange reaction. Cold Spring Harb. Symp. Quant. Biol. 49:1984;561-570
-
(1984)
Cold Spring Harb. Symp. Quant. Biol.
, vol.49
, pp. 561-570
-
-
Stasiak, A.1
Stasiak, Z.2
Koller, T.3
-
40
-
-
0026500416
-
The structure of the E. coli recA protein monomer and polymer
-
Story R.M., Weber I.T., Steitz T.A. The structure of the E. coli recA protein monomer and polymer. Nature. 355:1992;318-325
-
(1992)
Nature
, vol.355
, pp. 318-325
-
-
Story, R.M.1
Weber, I.T.2
Steitz, T.A.3
-
41
-
-
0036900120
-
Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair
-
Symington L.S. Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair. Microbiol. Mol. Biol. Rev. 66:2003;630-670
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.66
, pp. 630-670
-
-
Symington, L.S.1
-
42
-
-
0345276497
-
The crystal structure of the bifunctional primase-helicase of bacteriophage T7
-
Toth E.A., Li Y., Sawaya M.R., Cheng Y., Ellenberger T. The crystal structure of the bifunctional primase-helicase of bacteriophage T7. Mol. Cell. 12:2004;1113-1123
-
(2004)
Mol. Cell
, vol.12
, pp. 1113-1123
-
-
Toth, E.A.1
Li, Y.2
Sawaya, M.R.3
Cheng, Y.4
Ellenberger, T.5
-
43
-
-
0021813201
-
Networks of DNA and RecA protein are intermediates in homologous pairing
-
Tsang S.S., Chow S.A., Radding C.M. Networks of DNA and RecA protein are intermediates in homologous pairing. Biochemistry. 24:1985;3226-3232
-
(1985)
Biochemistry
, vol.24
, pp. 3226-3232
-
-
Tsang, S.S.1
Chow, S.A.2
Radding, C.M.3
-
44
-
-
0035812601
-
Comparison of bacteriophage T4 UvsX and Rad51 filaments suggests that RecA-like polymers may have evolved independently
-
a
-
Yang S., VanLoock M.S., Yu X., Egelman E.H. Comparison of bacteriophage T4 UvsX and Rad51 filaments suggests that RecA-like polymers may have evolved independently. J. Mol. Biol. 312:2001;999-1009. a
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 999-1009
-
-
Yang, S.1
Vanloock, M.S.2
Yu, X.3
Egelman, E.H.4
-
45
-
-
0035861994
-
Archaeal RadA protein binds DNA as both helical filaments and octameric rings
-
b
-
Yang S., Yu X., Seitz E.M., Kowalczykowski S.C., Egelman E.H. Archaeal RadA protein binds DNA as both helical filaments and octameric rings. J. Mol. Biol. 314:2001;1077-1085. b
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1077-1085
-
-
Yang, S.1
Yu, X.2
Seitz, E.M.3
Kowalczykowski, S.C.4
Egelman, E.H.5
-
46
-
-
0032037422
-
The mouse RecA-like gene Dmc1 is required for homologous chromosome synapsis during meiosis
-
Yoshida K., Kondoh G., Matsuda Y., Habu T., Nishimune Y., Morita T. The mouse RecA-like gene Dmc1 is required for homologous chromosome synapsis during meiosis. Mol. Cell. 1:1998;707-718
-
(1998)
Mol. Cell
, vol.1
, pp. 707-718
-
-
Yoshida, K.1
Kondoh, G.2
Matsuda, Y.3
Habu, T.4
Nishimune, Y.5
Morita, T.6
-
47
-
-
0031013231
-
The RecA hexamer is a structural homologue of ring helicases
-
Yu X., Egelman E.H. The RecA hexamer is a structural homologue of ring helicases. Nat. Struct. Biol. 4:1997;101-104
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 101-104
-
-
Yu, X.1
Egelman, E.H.2
|