메뉴 건너뛰기




Volumn 347, Issue 2, 2005, Pages 323-335

Amyloid formation from HypF-N under conditions in which the protein is initially in its native state

Author keywords

Amyloid; Disease; HypF; Misfolding; Oligomers

Indexed keywords

ACRYLAMIDE; AMYLOID PROTEIN; GLOBULAR PROTEIN; THIOFLAVINE; TRIFLUOROETHANOL; TRYPTOPHAN;

EID: 14644406760     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2005.01.034     Document Type: Article
Times cited : (69)

References (52)
  • 1
    • 0347357617 scopus 로고    scopus 로고
    • Protein folding and misfolding
    • C.M. Dobson Protein folding and misfolding Nature 426 2003 884 890
    • (2003) Nature , vol.426 , pp. 884-890
    • Dobson, C.M.1
  • 2
    • 0344944630 scopus 로고    scopus 로고
    • Protein aggregation and aggregate toxicity: New insights into protein folding, misfolding diseases and biological evolution
    • M. Stefani, and C.M. Dobson Protein aggregation and aggregate toxicity: new insights into protein folding, misfolding diseases and biological evolution J. Mol. Med. 81 2003 678 699
    • (2003) J. Mol. Med. , vol.81 , pp. 678-699
    • Stefani, M.1    Dobson, C.M.2
  • 3
    • 2342569618 scopus 로고    scopus 로고
    • Conformational constraints for amyloid fibrillation: The importance of being unfolded
    • V.N. Uversky, and A.L. Fink Conformational constraints for amyloid fibrillation: the importance of being unfolded Biochem. Biophys. Acta 1698 2004 131 153
    • (2004) Biochem. Biophys. Acta , vol.1698 , pp. 131-153
    • Uversky, V.N.1    Fink, A.L.2
  • 4
    • 2542427690 scopus 로고    scopus 로고
    • Oligomers on the brain: The emerging role of soluble protein aggregates in neurodegeneration
    • D.M. Walsh, and D.J. Selkoe Oligomers on the brain: the emerging role of soluble protein aggregates in neurodegeneration Protein Pept. Letters 11 2004 213 228
    • (2004) Protein Pept. Letters , vol.11 , pp. 213-228
    • Walsh, D.M.1    Selkoe, D.J.2
  • 5
    • 0030801746 scopus 로고    scopus 로고
    • The structure of amyloid fibrils by electron microscopy and X-ray diffraction
    • M. Sunde, and C. Blake The structure of amyloid fibrils by electron microscopy and X-ray diffraction Advan. Protein Chem. 50 1997 123 159
    • (1997) Advan. Protein Chem. , vol.50 , pp. 123-159
    • Sunde, M.1    Blake, C.2
  • 6
    • 0042847751 scopus 로고    scopus 로고
    • Cryo-electron microscopy structure of an SH3 amyloid fibril and model of the molecular packing
    • J.L. Jimenez, J.I. Guijarro, E. Orlova, J. Zurdo, C.M. Dobson, M. Sunde, and H.R. Saibil Cryo-electron microscopy structure of an SH3 amyloid fibril and model of the molecular packing EMBO J. 18 1999 815 821
    • (1999) EMBO J. , vol.18 , pp. 815-821
    • Jimenez, J.L.1    Guijarro, J.I.2    Orlova, E.3    Zurdo, J.4    Dobson, C.M.5    Sunde, M.6    Saibil, H.R.7
  • 7
    • 0037465708 scopus 로고    scopus 로고
    • Insights into the amyloid folding problem from solid-state NMR
    • R. Tycko Insights into the amyloid folding problem from solid-state NMR Biochemistry 42 2003 3151 3159
    • (2003) Biochemistry , vol.42 , pp. 3151-3159
    • Tycko, R.1
  • 8
    • 0347987853 scopus 로고    scopus 로고
    • Folding proteins in fatal ways
    • D.J. Selkoe Folding proteins in fatal ways Nature 426 2003 900 904
    • (2003) Nature , vol.426 , pp. 900-904
    • Selkoe, D.J.1
  • 9
    • 0037041420 scopus 로고    scopus 로고
    • Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases
    • M. Bucciantini, E. Giannoni, F. Chiti, F. Baroni, L. Formigli, and J. Zurdo Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases Nature 416 2002 507 511
    • (2002) Nature , vol.416 , pp. 507-511
    • Bucciantini, M.1    Giannoni, E.2    Chiti, F.3    Baroni, F.4    Formigli, L.5    Zurdo, J.6
  • 11
    • 5044235541 scopus 로고    scopus 로고
    • Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
    • A.M. Fernandez-Escamilla, F. Rousseau, J. Schymkowitz, and L. Serrano Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins Nature Biotechnol. 22 2004 1302 1306
    • (2004) Nature Biotechnol. , vol.22 , pp. 1302-1306
    • Fernandez-Escamilla, A.M.1    Rousseau, F.2    Schymkowitz, J.3    Serrano, L.4
  • 12
    • 3242785264 scopus 로고    scopus 로고
    • Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains
    • K.F. DuBay, A.P. Pawar, F. Chiti, J. Zurdo, C.M. Dobson, and M. Vendruscolo Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains J. Mol. Biol. 341 2004 1317 1326
    • (2004) J. Mol. Biol. , vol.341 , pp. 1317-1326
    • Dubay, K.F.1    Pawar, A.P.2    Chiti, F.3    Zurdo, J.4    Dobson, C.M.5    Vendruscolo, M.6
  • 13
    • 0042467550 scopus 로고    scopus 로고
    • Rationalisation of the effects of mutations on peptide and protein aggregation rates
    • F. Chiti, M. Stefani, N. Taddei, G. Ramponi, and C.M. Dobson Rationalisation of the effects of mutations on peptide and protein aggregation rates Nature 424 2003 805 808
    • (2003) Nature , vol.424 , pp. 805-808
    • Chiti, F.1    Stefani, M.2    Taddei, N.3    Ramponi, G.4    Dobson, C.M.5
  • 14
    • 0031056829 scopus 로고    scopus 로고
    • Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis
    • D.R. Booth, M. Sunde, V. Bellotti, C.V. Robinson, W.L. Hutchinson, and P.E. Fraser Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis Nature 385 1997 787 793
    • (1997) Nature , vol.385 , pp. 787-793
    • Booth, D.R.1    Sunde, M.2    Bellotti, V.3    Robinson, C.V.4    Hutchinson, W.L.5    Fraser, P.E.6
  • 15
    • 0032006678 scopus 로고    scopus 로고
    • The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways
    • J.W. Kelly The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways Curr. Opin. Struct. Biol. 8 1998 101 106
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 101-106
    • Kelly, J.W.1
  • 16
    • 0033777523 scopus 로고    scopus 로고
    • Formation of insulin amyloid fibrils followed by FTIR simultaneously with CD and electron microscopy
    • M. Bouchard, J. Zurdo, E.J. Nettleton, C.M. Dobson, and C.V. Robinson Formation of insulin amyloid fibrils followed by FTIR simultaneously with CD and electron microscopy Protein Sci. 9 2000 960 967
    • (2000) Protein Sci. , vol.9 , pp. 960-967
    • Bouchard, M.1    Zurdo, J.2    Nettleton, E.J.3    Dobson, C.M.4    Robinson, C.V.5
  • 17
    • 0034714351 scopus 로고    scopus 로고
    • Nucleated conformational conversion and the replication of conformational information by a prion determinant
    • T.R. Serio, A.G. Cashikar, A.S. Kowal, G.J. Sawicki, J.J. Moslehi, and L. Serpell Nucleated conformational conversion and the replication of conformational information by a prion determinant Science 289 2000 1317 1321
    • (2000) Science , vol.289 , pp. 1317-1321
    • Serio, T.R.1    Cashikar, A.G.2    Kowal, A.S.3    Sawicki, G.J.4    Moslehi, J.J.5    Serpell, L.6
  • 18
    • 0038047044 scopus 로고    scopus 로고
    • Structural transformations of oligomeric intermediates in the fibrillation of the immunoglobulin light chain LEN
    • P.O. Souillac, V.N. Uversky, and A.L. Fink Structural transformations of oligomeric intermediates in the fibrillation of the immunoglobulin light chain LEN Biochemistry 42 2003 8094 8104
    • (2003) Biochemistry , vol.42 , pp. 8094-8104
    • Souillac, P.O.1    Uversky, V.N.2    Fink, A.L.3
  • 19
    • 1842790837 scopus 로고    scopus 로고
    • Aggregation of the Acylphosphatase from Sulfolobus solfataricus: The folded and partially unfolded states can both be precursors for amyloid formation
    • G. Plakoutsi, N. Taddei, M. Stefani, and F. Chiti Aggregation of the Acylphosphatase from Sulfolobus solfataricus: the folded and partially unfolded states can both be precursors for amyloid formation J. Biol. Chem. 279 2004 14111 14119
    • (2004) J. Biol. Chem. , vol.279 , pp. 14111-14119
    • Plakoutsi, G.1    Taddei, N.2    Stefani, M.3    Chiti, F.4
  • 20
    • 3342902033 scopus 로고    scopus 로고
    • Modulation of S6 fibrillation by unfolding rates and gatekeeper residues
    • J.S. Pedersen, G. Christensen, and D.E. Otzen Modulation of S6 fibrillation by unfolding rates and gatekeeper residues J. Mol. Biol. 341 2004 575 588
    • (2004) J. Mol. Biol. , vol.341 , pp. 575-588
    • Pedersen, J.S.1    Christensen, G.2    Otzen, D.E.3
  • 21
    • 9144264986 scopus 로고    scopus 로고
    • Polyglutamine expansion in ataxin-3 does not affect protein stability: Implications for misfolding and disease
    • M.K. Chow, A.M. Ellisdon, L.D. Cabrita, and S.P. Bottomley Polyglutamine expansion in ataxin-3 does not affect protein stability: implications for misfolding and disease J. Biol. Chem. 279 2004 47643 47651
    • (2004) J. Biol. Chem. , vol.279 , pp. 47643-47651
    • Chow, M.K.1    Ellisdon, A.M.2    Cabrita, L.D.3    Bottomley, S.P.4
  • 22
    • 0037124337 scopus 로고    scopus 로고
    • The yeast prion Ure2p retains its native alpha-helical conformation upon assembly into protein fibrils in vitro
    • L. Bousset, N.H. Thomson, S.E. Radford, and R. Melki The yeast prion Ure2p retains its native alpha-helical conformation upon assembly into protein fibrils in vitro EMBO J. 17 2002 2903 2911
    • (2002) EMBO J. , vol.17 , pp. 2903-2911
    • Bousset, L.1    Thomson, N.H.2    Radford, S.E.3    Melki, R.4
  • 24
    • 9144228981 scopus 로고    scopus 로고
    • Lithostathine quadruple helical filaments form proteinase-K resistant deposits in Creutzfeldt-Jakob disease
    • E. Laurine, C. Gregoire, M. Fandrich, S. Engemann, S. Marchal, and L. Thion Lithostathine quadruple helical filaments form proteinase-K resistant deposits in Creutzfeldt-Jakob disease J. Biol. Chem. 278 2003 51770 51778
    • (2003) J. Biol. Chem. , vol.278 , pp. 51770-51778
    • Laurine, E.1    Gregoire, C.2    Fandrich, M.3    Engemann, S.4    Marchal, S.5    Thion, L.6
  • 25
    • 0036382641 scopus 로고    scopus 로고
    • Crystal structure and anion binding in the prokaryotic hydrogenase maturation factor HypF acylphosphatase-like domain
    • C. Rosano, S. Zuccotti, M. Bucciantini, M. Stefani, G. Ramponi, and M. Bolognesi Crystal structure and anion binding in the prokaryotic hydrogenase maturation factor HypF acylphosphatase-like domain J. Mol. Biol. 321 2002 785 796
    • (2002) J. Mol. Biol. , vol.321 , pp. 785-796
    • Rosano, C.1    Zuccotti, S.2    Bucciantini, M.3    Stefani, M.4    Ramponi, G.5    Bolognesi, M.6
  • 26
    • 0035187228 scopus 로고    scopus 로고
    • Solution conditions can promote formation of either amyloid protofilaments or mature fibrils from the HypF N-terminal domain
    • F. Chiti, M. Bucciantini, C. Capanni, N. Taddei, C.M. Dobson, and M. Stefani Solution conditions can promote formation of either amyloid protofilaments or mature fibrils from the HypF N-terminal domain Protein Sci. 10 2001 2541 2547
    • (2001) Protein Sci. , vol.10 , pp. 2541-2547
    • Chiti, F.1    Bucciantini, M.2    Capanni, C.3    Taddei, N.4    Dobson, C.M.5    Stefani, M.6
  • 27
    • 11144353842 scopus 로고    scopus 로고
    • Monitoring the process of HypF fibrillization and liposome permeabilization by protofibrils
    • A. Relini, S. Torrassa, R. Rolandi, A. Gliozzi, C. Rosano, and C. Canale Monitoring the process of HypF fibrillization and liposome permeabilization by protofibrils J. Mol. Biol. 338 2004 943 957
    • (2004) J. Mol. Biol. , vol.338 , pp. 943-957
    • Relini, A.1    Torrassa, S.2    Rolandi, R.3    Gliozzi, A.4    Rosano, C.5    Canale, C.6
  • 28
    • 0038047129 scopus 로고    scopus 로고
    • Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding
    • G. Calloni, N. Taddei, K.W. Plaxco, G. Ramponi, M. Stefani, and F. Chiti Comparison of the folding processes of distantly related proteins. Importance of hydrophobic content in folding J. Mol. Biol. 330 2003 577 591
    • (2003) J. Mol. Biol. , vol.330 , pp. 577-591
    • Calloni, G.1    Taddei, N.2    Plaxco, K.W.3    Ramponi, G.4    Stefani, M.5    Chiti, F.6
  • 30
    • 0019593952 scopus 로고
    • Fluorescence quenching studies with proteins
    • M.R. Eftink, and C.A. Ghiron Fluorescence quenching studies with proteins Anal. Biochem. 114 1981 199 227
    • (1981) Anal. Biochem. , vol.114 , pp. 199-227
    • Eftink, M.R.1    Ghiron, C.A.2
  • 31
    • 0034708358 scopus 로고    scopus 로고
    • Acrylamide quenching of apo- and holo-α-lactalbumin in guanidine hydrochloride
    • R.M. France, and S.H. Grossman Acrylamide quenching of apo- and holo-α-lactalbumin in guanidine hydrochloride Biochem. Biophys. Res. Commun. 269 2000 709 712
    • (2000) Biochem. Biophys. Res. Commun. , vol.269 , pp. 709-712
    • France, R.M.1    Grossman, S.H.2
  • 32
    • 0013800421 scopus 로고
    • The interaction of a naphthalene dye with apomyoglobin and apohemoglobin. A fluorescent probe of non-polar binding sites
    • L. Stryer The interaction of a naphthalene dye with apomyoglobin and apohemoglobin. A fluorescent probe of non-polar binding sites J. Mol. Biol. 13 1965 482 495
    • (1965) J. Mol. Biol. , vol.13 , pp. 482-495
    • Stryer, L.1
  • 35
    • 0029124248 scopus 로고
    • Molten globule and protein folding
    • O.B. Ptitsyn Molten globule and protein folding Advan. Protein Chem. 47 1995 83 229
    • (1995) Advan. Protein Chem. , vol.47 , pp. 83-229
    • Ptitsyn, O.B.1
  • 36
    • 0033988167 scopus 로고    scopus 로고
    • Evidence concerning rate-limiting steps in protein folding from the effects of trifluoroethanol
    • D. Hamada, F. Chiti, J.I. Guijarro, M. Kataoka, N. Taddei, and C.M. Dobson Evidence concerning rate-limiting steps in protein folding from the effects of trifluoroethanol Nature Struct. Biol. 7 2000 58 61
    • (2000) Nature Struct. Biol. , vol.7 , pp. 58-61
    • Hamada, D.1    Chiti, F.2    Guijarro, J.I.3    Kataoka, M.4    Taddei, N.5    Dobson, C.M.6
  • 37
    • 0347594241 scopus 로고    scopus 로고
    • Relative influence of hydrophobicity and net charge in the aggregation of two homologous proteins
    • M. Calamai, N. Taddei, M. Stefani, G. Ramponi, and F. Chiti Relative influence of hydrophobicity and net charge in the aggregation of two homologous proteins Biochemistry 42 2003 15078 15083
    • (2003) Biochemistry , vol.42 , pp. 15078-15083
    • Calamai, M.1    Taddei, N.2    Stefani, M.3    Ramponi, G.4    Chiti, F.5
  • 38
    • 0037020259 scopus 로고    scopus 로고
    • Kinetic studies of amyloid beta-protein fibril assembly. Differential effects of alpha-helix stabilization
    • Y. Fezoui, and D.B. Teplow Kinetic studies of amyloid beta-protein fibril assembly. Differential effects of alpha-helix stabilization J. Biol. Chem. 277 2002 36948 36954
    • (2002) J. Biol. Chem. , vol.277 , pp. 36948-36954
    • Fezoui, Y.1    Teplow, D.B.2
  • 39
    • 0037432332 scopus 로고    scopus 로고
    • Conformational behaviour and aggregation of alpha-synuclein in organic solvents: Modeling the effects of membranes
    • L.A. Munishkina, C. Phelan, V.N. Uversky, and A.L. Fink Conformational behaviour and aggregation of alpha-synuclein in organic solvents: modeling the effects of membranes Biochemistry 42 2003 2720 2730
    • (2003) Biochemistry , vol.42 , pp. 2720-2730
    • Munishkina, L.A.1    Phelan, C.2    Uversky, V.N.3    Fink, A.L.4
  • 41
    • 0035839035 scopus 로고    scopus 로고
    • Dependence on solution conditions of aggregation and amyloid formation by an SH3 domain
    • J. Zurdo, J.I. Guijarro, J.L. Jimenez, H.R. Saibil, and C.M. Dobson Dependence on solution conditions of aggregation and amyloid formation by an SH3 domain J. Mol. Biol. 311 2001 325 340
    • (2001) J. Mol. Biol. , vol.311 , pp. 325-340
    • Zurdo, J.1    Guijarro, J.I.2    Jimenez, J.L.3    Saibil, H.R.4    Dobson, C.M.5
  • 43
    • 0034647438 scopus 로고    scopus 로고
    • Formation and seeding of amyloid fibrils from wild-type hen lysozyme and a peptide fragment from the beta-domain
    • M.R. Krebs, D.K. Wilkins, E.W. Chung, M.C. Pitkeathly, A.K. Chamberlain, and J. Zurdo Formation and seeding of amyloid fibrils from wild-type hen lysozyme and a peptide fragment from the beta-domain J. Mol. Biol. 300 2000 541 549
    • (2000) J. Mol. Biol. , vol.300 , pp. 541-549
    • Krebs, M.R.1    Wilkins, D.K.2    Chung, E.W.3    Pitkeathly, M.C.4    Chamberlain, A.K.5    Zurdo, J.6
  • 44
    • 0034612254 scopus 로고    scopus 로고
    • The preaggregated state of an amyloidogenic protein: Hydrostatic pressure converts native transthyretin into the amyloidogenic state
    • A.D. Ferrao-Gonzales, S.O. Souto, J.L. Silva, and D. Foguel The preaggregated state of an amyloidogenic protein: hydrostatic pressure converts native transthyretin into the amyloidogenic state Proc. Natl Acad. Sci. USA 97 2000 6445 6450
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6445-6450
    • Ferrao-Gonzales, A.D.1    Souto, S.O.2    Silva, J.L.3    Foguel, D.4
  • 46
    • 0038043276 scopus 로고    scopus 로고
    • Amyloid-like fibril formation in an all beta-barrel protein. Partially structured intermediate state(s) is a precursor for fibril formation
    • S. Srisailam, T.K. Kumar, D. Rajalingam, K.M. Kathir, H.S. Sheu, and F.J. Jan Amyloid-like fibril formation in an all beta-barrel protein. Partially structured intermediate state(s) is a precursor for fibril formation J. Biol. Chem. 278 2003 17701 17709
    • (2003) J. Biol. Chem. , vol.278 , pp. 17701-17709
    • Srisailam, S.1    Kumar, T.K.2    Rajalingam, D.3    Kathir, K.M.4    Sheu, H.S.5    Jan, F.J.6
  • 47
  • 48
    • 0028232822 scopus 로고
    • The refolding of human lysozyme: A comparison with the structurally homologous hen lysozyme
    • S.D. Hooke, S.E. Radford, and C.M. Dobson The refolding of human lysozyme: a comparison with the structurally homologous hen lysozyme Biochemistry 33 1994 5867 5876
    • (1994) Biochemistry , vol.33 , pp. 5867-5876
    • Hooke, S.D.1    Radford, S.E.2    Dobson, C.M.3
  • 49
    • 0032849874 scopus 로고    scopus 로고
    • Quantification of beta-sheet amyloid fibril structures with thioflavin T
    • H. LeVine 3rd Quantification of beta-sheet amyloid fibril structures with thioflavin T Methods Enzymol. 309 1999 274 284
    • (1999) Methods Enzymol. , vol.309 , pp. 274-284
    • Levine III, H.1
  • 50
    • 0025301439 scopus 로고
    • Protein secondary structure and circular dichroism: A practical guide
    • W.C. Johnson Jr Protein secondary structure and circular dichroism: a practical guide Proteins: Struct. Funct. Genet. 7 1990 205 214
    • (1990) Proteins: Struct. Funct. Genet. , vol.7 , pp. 205-214
    • Johnson, W.C.1    Jr2
  • 51
    • 0017916757 scopus 로고
    • Solute quenching of protein fluorescence
    • S.S. Lehrer, and P.C. Leavis Solute quenching of protein fluorescence Methods Enzymol. 49 1978 222 256
    • (1978) Methods Enzymol. , vol.49 , pp. 222-256
    • Lehrer, S.S.1    Leavis, P.C.2
  • 52
    • 0023697408 scopus 로고
    • Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenyl-methanesulfonyl alpha-chymotrypsin using different denaturants
    • M.M. Santoro, and D.W. Bolen Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenyl-methanesulfonyl alpha-chymotrypsin using different denaturants Biochemistry 27 1988 8063 8068
    • (1988) Biochemistry , vol.27 , pp. 8063-8068
    • Santoro, M.M.1    Bolen, D.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.