-
2
-
-
0024376173
-
Ras oncogenes in human cancer: A review
-
Bos J. Ras oncogenes in human cancer: a review. Cancer Res 1989;49:4682-4689.
-
(1989)
Cancer Res
, vol.49
, pp. 4682-4689
-
-
Bos, J.1
-
3
-
-
0026026818
-
The GTPase superfamily: Conserved structure and molecular mechanism
-
Bourne HR, Sanders DA, McCormick F. The GTPase superfamily: conserved structure and molecular mechanism. Nature 1991;349:117-127.
-
(1991)
Nature
, vol.349
, pp. 117-127
-
-
Bourne, H.R.1
Sanders, D.A.2
McCormick, F.3
-
4
-
-
0026711081
-
Mutational and kinetic analyses of the GTPase-activating protein (GAP)-p21 interaction: The C-terminal domain of GAP is not sufficient for full activity
-
Gideon P, John J, Frech M, Lautwein A, Clark R, Scheffier JE, Wittinghofer A. Mutational and kinetic analyses of the GTPase-activating protein (GAP)-p21 interaction: the C-terminal domain of GAP is not sufficient for full activity. Mol Cell Biol 1992;12:2050-2056.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2050-2056
-
-
Gideon, P.1
John, J.2
Frech, M.3
Lautwein, A.4
Clark, R.5
Scheffier, J.E.6
Wittinghofer, A.7
-
5
-
-
0028925947
-
Substrate-assisted catalysis as a mechanism for GTP hydrolysis of p21 ras and other GTP-binding proteins
-
Schweins T, Geyer M, Scheffzek K, Warshel A, Kalbitzer HR, Wittinghofer A. Substrate-assisted catalysis as a mechanism for GTP hydrolysis of p21 ras and other GTP-binding proteins. Nat Struct Biol 1995;2:36-44.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 36-44
-
-
Schweins, T.1
Geyer, M.2
Scheffzek, K.3
Warshel, A.4
Kalbitzer, H.R.5
Wittinghofer, A.6
-
7
-
-
0027239613
-
Function and Regulation of Ras
-
Lowy DR, Willumsen BM. Function and Regulation of Ras. A Rev Biochem 1993;62:851-891.
-
(1993)
A Rev Biochem
, vol.62
, pp. 851-891
-
-
Lowy, D.R.1
Willumsen, B.M.2
-
8
-
-
0025117674
-
Molecular switch for signal transduction: Structural differences between active and inactive forms of protooncogenic Ras proteins
-
Milburn M, Tong L, DeVos AM, Bruenger A, Yamaizumi Z, Nishimura S, Kim SH. Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic Ras proteins. Science 1990;247:939-945.
-
(1990)
Science
, vol.247
, pp. 939-945
-
-
Milburn, M.1
Tong, L.2
DeVos, A.M.3
Bruenger, A.4
Yamaizumi, Z.5
Nishimura, S.6
Kim, S.H.7
-
9
-
-
0025310575
-
Refined crystal structure of the triphosphate conformation of H-Ras P21 at 1.35 Å resolution: Implications for the mechanism of GTP hydrolysis
-
Pai EF, Krengel U, Petsko GA, Goody RS, Kabsch W, Wittinghofer A. Refined crystal structure of the triphosphate conformation of H-Ras P21 at 1.35 Å resolution: implications for the mechanism of GTP hydrolysis. EMBO J 1990;9:2351-2359.
-
(1990)
EMBO J
, vol.9
, pp. 2351-2359
-
-
Pai, E.F.1
Krengel, U.2
Petsko, G.A.3
Goody, R.S.4
Kabsch, W.5
Wittinghofer, A.6
-
10
-
-
0030772378
-
The Ras-RasGAP complex-structural basis for GTPase activation and its loss in oncogenic Ras mutants
-
Scheffzek K, Ahmadian MR, Kabsch W, Wiesmuller L, Lautwein A, Schmitz F, Wittinghofer A. The Ras-RasGAP complex-structural basis for GTPase activation and its loss in oncogenic Ras mutants. Science 1997;277:333-338.
-
(1997)
Science
, vol.277
, pp. 333-338
-
-
Scheffzek, K.1
Ahmadian, M.R.2
Kabsch, W.3
Wiesmuller, L.4
Lautwein, A.5
Schmitz, F.6
Wittinghofer, A.7
-
11
-
-
0031231083
-
Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras
-
Ahmadian MR, Stege P, Scheffzek K, Wittinghofer A. Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras. Nat Struct Biol 1997;4:686-689.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 686-689
-
-
Ahmadian, M.R.1
Stege, P.2
Scheffzek, K.3
Wittinghofer, A.4
-
13
-
-
0030920782
-
G protein mechanisms: Insights from structural analysis
-
Sprang SR. G protein mechanisms: insights from structural analysis. Annu Rev Biochem 1997;66:639-678.
-
(1997)
Annu Rev Biochem
, vol.66
, pp. 639-678
-
-
Sprang, S.R.1
-
14
-
-
0026713142
-
On the mechanism of guanosine triphosphate hydrolysis in ras p21 proteins
-
Langen R, Schweins T, Warshel A. On the mechanism of guanosine triphosphate hydrolysis in ras p21 proteins. Biochemistry 1992;31:8691-8696.
-
(1992)
Biochemistry
, vol.31
, pp. 8691-8696
-
-
Langen, R.1
Schweins, T.2
Warshel, A.3
-
15
-
-
0027405662
-
Probing the structure and mechanism of Ras protein with an expanded genetic code
-
Chung H-H, Benson DR, Schultz PG. Probing the structure and mechanism of Ras protein with an expanded genetic code. Science 1993;259:806-809.
-
(1993)
Science
, vol.259
, pp. 806-809
-
-
Chung, H.-H.1
Benson, D.R.2
Schultz, P.G.3
-
16
-
-
0034663856
-
How does GAP catalyze the GTPase reaction of Ras? A computer simulation study
-
Glennon TM, Villa J, Warshel A. How does GAP catalyze the GTPase reaction of Ras? A computer simulation study. Biochemistry 2000;39:9641-9651.
-
(2000)
Biochemistry
, vol.39
, pp. 9641-9651
-
-
Glennon, T.M.1
Villa, J.2
Warshel, A.3
-
18
-
-
0041876227
-
Computer simulations of enzyme catalysis: Methods, progress, and insights
-
Warshel A. Computer simulations of enzyme catalysis: methods, progress, and insights. Annu Rev Bioph Biom 2003;32:425-443.
-
(2003)
Annu Rev Bioph Biom
, vol.32
, pp. 425-443
-
-
Warshel, A.1
-
19
-
-
0000728542
-
Microscopic and semimicroscopic calculations of electrostatic energies in proteins by the POLARIS and ENZYMIX programs
-
Lee FS, Chu ZT, Warshel A. Microscopic and semimicroscopic calculations of electrostatic energies in proteins by the POLARIS and ENZYMIX programs. J Comp Chem 1993;14:161-185.
-
(1993)
J Comp Chem
, vol.14
, pp. 161-185
-
-
Lee, F.S.1
Chu, Z.T.2
Warshel, A.3
-
20
-
-
36549094414
-
A surface constrained all-atom solvent model for effective simulations of polar solutions
-
King G, Warshel A. A surface constrained all-atom solvent model for effective simulations of polar solutions. J Chem Phys 1989;91:3647-3661.
-
(1989)
J Chem Phys
, vol.91
, pp. 3647-3661
-
-
King, G.1
Warshel, A.2
-
21
-
-
0000115003
-
A local reaction field method for fast evaluation of long-range electrostatic interactions in molecular simulations
-
Lee FS, Warshel A. A local reaction field method for fast evaluation of long-range electrostatic interactions in molecular simulations. J Chem Phys 1992;97:3100-3107.
-
(1992)
J Chem Phys
, vol.97
, pp. 3100-3107
-
-
Lee, F.S.1
Warshel, A.2
-
22
-
-
0026596911
-
Calculations of antibody-antigen interactions: Microscopic and semi-microscopic evaluation of the free energies of binding of phosphorylcholine analogs to McPC603
-
Lee FS, Chu ZT, Bolger MB, Warshel A. Calculations of antibody-antigen interactions: microscopic and semi-microscopic evaluation of the free energies of binding of phosphorylcholine analogs to McPC603. Protein Eng 1992;5:215-228.
-
(1992)
Protein Eng
, vol.5
, pp. 215-228
-
-
Lee, F.S.1
Chu, Z.T.2
Bolger, M.B.3
Warshel, A.4
-
23
-
-
0342321950
-
Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease
-
Sham YY, Chu ZT, Tao H, Warshel A. Examining methods for calculations of binding free energies: LRA, LIE, PDLD-LRA, and PDLD/S-LRA calculations of ligands binding to an HIV protease. Proteins 2000;39:393-407.
-
(2000)
Proteins
, vol.39
, pp. 393-407
-
-
Sham, Y.Y.1
Chu, Z.T.2
Tao, H.3
Warshel, A.4
-
24
-
-
0037030875
-
Theoretical investigation of the binding free energies and key substrate-recognition components of the replication fidelity of human DNA polymerase β
-
Florian J, Goodman MF, Warshel A. Theoretical investigation of the binding free energies and key substrate-recognition components of the replication fidelity of human DNA polymerase β. J Phys Chem B 2002;106:5739-5753.
-
(2002)
J Phys Chem B
, vol.106
, pp. 5739-5753
-
-
Florian, J.1
Goodman, M.F.2
Warshel, A.3
-
25
-
-
0028155689
-
A new method for predicting binding affinity in computer-aided drug design
-
Aqvist J, Medina C, Samuelsson J-E. A new method for predicting binding affinity in computer-aided drug design. Protein Eng 1994;7:385-391.
-
(1994)
Protein Eng
, vol.7
, pp. 385-391
-
-
Aqvist, J.1
Medina, C.2
Samuelsson, J.-E.3
-
26
-
-
0242364982
-
Calculation of free energy differences from computer simulations of initial and final states
-
Hummer G, Szabo A. Calculation of free energy differences from computer simulations of initial and final states. J Chem Phys 1996;105:2004-2010.
-
(1996)
J Chem Phys
, vol.105
, pp. 2004-2010
-
-
Hummer, G.1
Szabo, A.2
-
27
-
-
0030584674
-
Electrostatic control of GTP and GDP binding in the oncoprotein p21 ras
-
Muegge I, Schweins T, Langen R, Warshel A. Electrostatic control of GTP and GDP binding in the oncoprotein p21 ras. Structure 1996;4:475-489.
-
(1996)
Structure
, vol.4
, pp. 475-489
-
-
Muegge, I.1
Schweins, T.2
Langen, R.3
Warshel, A.4
-
28
-
-
0242515838
-
On the generation of catalytic antibodies by transition state analogues
-
Barbany M, Gutierrez-de-Teran H, Sanz F, Villá-Freixa J, Warshel A. On the generation of catalytic antibodies by transition state analogues. Chem BioChem 2003;4:277-285.
-
(2003)
Chem BioChem
, vol.4
, pp. 277-285
-
-
Barbany, M.1
Gutierrez-De-Teran, H.2
Sanz, F.3
Villá-Freixa, J.4
Warshel, A.5
-
29
-
-
0037051671
-
Enzymatic GTP hydrolysis: Insights from an ab initio molecular dynamics study
-
Cavalli A, Carloni P. Enzymatic GTP hydrolysis: insights from an ab initio molecular dynamics study. J Am Chem Soc 2002;124:3763-3768.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 3763-3768
-
-
Cavalli, A.1
Carloni, P.2
-
30
-
-
0035933139
-
The arginine finger of RasGAP helps Gln-61 align the nucleophilic water in GAP-stimulated hydrolysis of GTP
-
Resat H, Straatsma TP, Dixon DA, Miller JH. The arginine finger of RasGAP helps Gln-61 align the nucleophilic water in GAP-stimulated hydrolysis of GTP. Proc Natl Acad Sci 2001;98:6033-6038.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 6033-6038
-
-
Resat, H.1
Straatsma, T.P.2
Dixon, D.A.3
Miller, J.H.4
-
31
-
-
0034710867
-
How important are entropy contributions in enzymatic catalysis?
-
Villá J, Strajbl M, Glennon TM, Sham YY, Chu ZT, Warshel A. How important are entropy contributions in enzymatic catalysis? Proc Natl Acad Sci USA 2000;97:11899-11904.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11899-11904
-
-
Villá, J.1
Strajbl, M.2
Glennon, T.M.3
Sham, Y.Y.4
Chu, Z.T.5
Warshel, A.6
-
34
-
-
0029825324
-
Linear free energy relationships in the intrinsic and GTPase activating protein-stimulated guanosine 5′-triphosphate hydrolysis of p21 ras
-
Schweins T, Geyer M, Kalbitzer HR, Wittinghofer A, Warshel A. Linear free energy relationships in the intrinsic and GTPase activating protein-stimulated guanosine 5′-triphosphate hydrolysis of p21 ras. Biochemistry 1996;35:14225-14231.
-
(1996)
Biochemistry
, vol.35
, pp. 14225-14231
-
-
Schweins, T.1
Geyer, M.2
Kalbitzer, H.R.3
Wittinghofer, A.4
Warshel, A.5
-
35
-
-
0041025108
-
The substrate-assisted general base catalysis model for phosphate monoester hydrolysis: Evaluation using reactivity comparisons
-
Admiral SJ, Herschlag D. The substrate-assisted general base catalysis model for phosphate monoester hydrolysis: evaluation using reactivity comparisons. J Am Chem Soc 2000;122:2145-2148.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 2145-2148
-
-
Admiral, S.J.1
Herschlag, D.2
-
36
-
-
0035282079
-
Substrate assisted catalysis - Application to G proteins
-
Kosloff M, Selinger Z. Substrate assisted catalysis - application to G proteins. Trends Biochem Sci 2001;26:161-166.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 161-166
-
-
Kosloff, M.1
Selinger, Z.2
|