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Volumn 13, Issue 2, 2005, Pages 287-296

Small-angle X-ray scattering reveals the solution structure of the full-length DNA gyrase A subunit

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) A; PROTEIN SUBUNIT;

EID: 13844275625     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2004.12.011     Document Type: Article
Times cited : (61)

References (47)
  • 2
  • 3
    • 0018666498 scopus 로고
    • A sign inversion mechanism for enzymatic supercoiling of DNA
    • P.O. Brown, and N.R. Cozzarelli A sign inversion mechanism for enzymatic supercoiling of DNA Science 206 1979 1081 1083
    • (1979) Science , vol.206 , pp. 1081-1083
    • Brown, P.O.1    Cozzarelli, N.R.2
  • 4
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • J.J. Champoux DNA topoisomerases: structure, function, and mechanism Annu. Rev. Biochem. 70 2001 369 413
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 5
    • 2442611949 scopus 로고    scopus 로고
    • The C-terminal domain of DNA gyrase a adopts a DNA-bending β-pinwheel fold
    • K.D. Corbett, R.K. Shultzaberger, and J.M. Berger The C-terminal domain of DNA gyrase A adopts a DNA-bending β-pinwheel fold Proc. Natl. Acad. Sci. USA 101 2004 7293 7298
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 7293-7298
    • Corbett, K.D.1    Shultzaberger, R.K.2    Berger, J.M.3
  • 6
    • 0038121041 scopus 로고    scopus 로고
    • Fluoroquinolones: Action and resistance
    • K. Drlica, and M. Malik Fluoroquinolones: action and resistance Curr. Top. Med. Chem. 3 2003 249 282
    • (2003) Curr. Top. Med. Chem. , vol.3 , pp. 249-282
    • Drlica, K.1    Malik, M.2
  • 7
    • 0038778607 scopus 로고    scopus 로고
    • The quinolones: Decades of development and use
    • A.M. Emmerson, and A.M. Jones The quinolones: decades of development and use J. Antimicrob. Chemother. 51 Suppl. 1 2003 13 20
    • (2003) J. Antimicrob. Chemother. , vol.51 , Issue.1 SUPPL. , pp. 13-20
    • Emmerson, A.M.1    Jones, A.M.2
  • 8
    • 0032947158 scopus 로고    scopus 로고
    • Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands
    • D. Fass, C.E. Bogden, and J.M. Berger Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands Nat. Struct. Biol. 6 1999 322 326
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 322-326
    • Fass, D.1    Bogden, C.E.2    Berger, J.M.3
  • 9
    • 0001229341 scopus 로고    scopus 로고
    • Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
    • J. Garcia de la Torre, M.L. Huertas, and B. Carrasco Calculation of hydrodynamic properties of globular proteins from their atomic-level structure Biophys. J. 78 2000 719 730
    • (2000) Biophys. J. , vol.78 , pp. 719-730
    • Garciadela Torre, J.1    Huertas, M.L.2    Carrasco, B.3
  • 10
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • P. Gouet, E. Courcelle, D.I. Stuart, and F. Metoz ESPript: analysis of multiple sequence alignments in PostScript Bioinformatics 15 1999 305 308
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4
  • 11
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • N. Guex, and M.C. Peitsch SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 18 1997 2714 2723
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 13
    • 0032190407 scopus 로고    scopus 로고
    • Clinical applications of anticancer drugs targeted to topoisomerase II
    • K.R. Hande Clinical applications of anticancer drugs targeted to topoisomerase II Biochim. Biophys. Acta 1400 1998 173 184
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 173-184
    • Hande, K.R.1
  • 15
    • 11244308067 scopus 로고    scopus 로고
    • Structure of the topoisomerase IV C-terminal domain: A broken beta-propeller implies a role as geometry facilitator in catalysis
    • T.J. Hsieh, L. Farh, W.M. Huang, and N.L. Chan Structure of the topoisomerase IV C-terminal domain: A broken beta-propeller implies a role as geometry facilitator in catalysis J. Biol. Chem. 279 2004 55587 55593
    • (2004) J. Biol. Chem. , vol.279 , pp. 55587-55593
    • Hsieh, T.J.1    Farh, L.2    Huang, W.M.3    Chan, N.L.4
  • 16
    • 0029955899 scopus 로고    scopus 로고
    • Conversion of DNA gyrase into a conventional type II topoisomerase
    • S.C. Kampranis, and A. Maxwell Conversion of DNA gyrase into a conventional type II topoisomerase Proc. Natl. Acad. Sci. USA 93 1996 14416 14421
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 14416-14421
    • Kampranis, S.C.1    Maxwell, A.2
  • 18
    • 0021930326 scopus 로고
    • DNA gyrase and its complexes with DNA: Direct observation by electron microscopy
    • T. Kirchhausen, J.C. Wang, and S.C. Harrison DNA gyrase and its complexes with DNA: direct observation by electron microscopy Cell 41 1985 933 943
    • (1985) Cell , vol.41 , pp. 933-943
    • Kirchhausen, T.1    Wang, J.C.2    Harrison, S.C.3
  • 19
    • 0019322667 scopus 로고
    • Deoxyribonucleic acid gyrase-deoxyribonucleic acid complex containing 140 base pairs of deoxyribonucleic acid and an alpha 2 beta 2 protein core
    • L. Klevan, and J.C. Wang Deoxyribonucleic acid gyrase-deoxyribonucleic acid complex containing 140 base pairs of deoxyribonucleic acid and an alpha 2 beta 2 protein core Biochemistry 19 1980 5229 5234
    • (1980) Biochemistry , vol.19 , pp. 5229-5234
    • Klevan, L.1    Wang, J.C.2
  • 21
    • 0035124442 scopus 로고    scopus 로고
    • Automated matching of high- and low-resolution structural models
    • M.B. Kozin, and D.I. Svergun Automated matching of high- and low-resolution structural models J. Appl. Crystallogr. 34 2001 33 41
    • (2001) J. Appl. Crystallogr. , vol.34 , pp. 33-41
    • Kozin, M.B.1    Svergun, D.I.2
  • 22
    • 0024849694 scopus 로고
    • Nuclease protection by Drosophila DNA topoisomerase II. Enzyme/DNA contacts at the strong topoisomerase II cleavage sites
    • M.P. Lee, M. Sander, and T. Hsieh Nuclease protection by Drosophila DNA topoisomerase II. Enzyme/DNA contacts at the strong topoisomerase II cleavage sites J. Biol. Chem. 264 1989 21779 21787
    • (1989) J. Biol. Chem. , vol.264 , pp. 21779-21787
    • Lee, M.P.1    Sander, M.2    Hsieh, T.3
  • 23
    • 0029978822 scopus 로고    scopus 로고
    • The nature of inhibition of DNA gyrase by the coumarins and the cyclothialidines revealed by X-ray crystallography
    • R.J. Lewis, O.M. Singh, C.V. Smith, T. Skarzynski, A. Maxwell, A.J. Wonacott, and D.B. Wigley The nature of inhibition of DNA gyrase by the coumarins and the cyclothialidines revealed by X-ray crystallography EMBO J. 15 1996 1412 1420
    • (1996) EMBO J. , vol.15 , pp. 1412-1420
    • Lewis, R.J.1    Singh, O.M.2    Smith, C.V.3    Skarzynski, T.4    Maxwell, A.5    Wonacott, A.J.6    Wigley, D.B.7
  • 24
    • 0017968152 scopus 로고
    • Micrococcus luteus DNA gyrase: Active components and a model for its supercoiling of DNA
    • L.F. Liu, and J.C. Wang Micrococcus luteus DNA gyrase: active components and a model for its supercoiling of DNA Proc. Natl. Acad. Sci. USA 75 1978 2098 2102
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 2098-2102
    • Liu, L.F.1    Wang, J.C.2
  • 25
    • 4444363101 scopus 로고    scopus 로고
    • Overexpression and purification of bacterial DNA gyrase
    • N. Osheroff M.-A. Bjornsti Humana Press Totowa, New Jersey
    • A. Maxwell, and A.J. Howells Overexpression and purification of bacterial DNA gyrase N. Osheroff M.-A. Bjornsti DNA Topoisomerase Protocols, Part I: DNA Topology and Enzymes 1999 Humana Press Totowa, New Jersey 135 144
    • (1999) DNA Topoisomerase Protocols, Part I: DNA Topology and Enzymes , pp. 135-144
    • Maxwell, A.1    Howells, A.J.2
  • 26
    • 0012684806 scopus 로고    scopus 로고
    • The ATP-binding site of type II topoisomerases as a target for antibacterial drugs
    • A. Maxwell, and D.M. Lawson The ATP-binding site of type II topoisomerases as a target for antibacterial drugs Curr. Top. Med. Chem. 3 2003 283 303
    • (2003) Curr. Top. Med. Chem. , vol.3 , pp. 283-303
    • Maxwell, A.1    Lawson, D.M.2
  • 28
    • 0028233250 scopus 로고
    • Evidence for a conformational change in the DNA gyrase-DNA complex from hydroxyl radical footprinting
    • G. Orphanides, and A. Maxwell Evidence for a conformational change in the DNA gyrase-DNA complex from hydroxyl radical footprinting Nucleic Acids Res. 22 1994 1567 1575
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1567-1575
    • Orphanides, G.1    Maxwell, A.2
  • 29
    • 0028806614 scopus 로고
    • The interaction of Escherichia coli topoisomerase IV with DNA
    • H. Peng, and K.J. Marians The interaction of Escherichia coli topoisomerase IV with DNA J. Biol. Chem. 270 1995 25286 25290
    • (1995) J. Biol. Chem. , vol.270 , pp. 25286-25290
    • Peng, H.1    Marians, K.J.2
  • 30
    • 0036930752 scopus 로고    scopus 로고
    • Addition of missing loops and domains to protein models by x-ray solution scattering
    • M.V. Petoukhov, N.A. Eady, K.A. Brown, and D.I. Svergun Addition of missing loops and domains to protein models by x-ray solution scattering Biophys. J. 83 2002 3113 3125
    • (2002) Biophys. J. , vol.83 , pp. 3113-3125
    • Petoukhov, M.V.1    Eady, N.A.2    Brown, K.A.3    Svergun, D.I.4
  • 31
    • 0032189683 scopus 로고    scopus 로고
    • Mechanism of action of eukaryotic DNA topoisomerase I and drugs targeted to the enzyme
    • Y. Pommier, P. Pourquier, Y. Fan, and D. Strumberg Mechanism of action of eukaryotic DNA topoisomerase I and drugs targeted to the enzyme Biochim. Biophys. Acta 1400 1998 83 105
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 83-105
    • Pommier, Y.1    Pourquier, P.2    Fan, Y.3    Strumberg, D.4
  • 32
    • 0037093648 scopus 로고    scopus 로고
    • C-terminal domain of gyrase a is predicted to have a β-propeller structure
    • Y. Qi, J. Pei, and N.V. Grishin C-terminal domain of gyrase A is predicted to have a β-propeller structure Proteins 47 2002 258 264
    • (2002) Proteins , vol.47 , pp. 258-264
    • Qi, Y.1    Pei, J.2    Grishin, N.V.3
  • 33
    • 0025758726 scopus 로고
    • The C-terminal domain of the Escherichia coli DNA gyrase a subunit is a DNA-binding protein
    • R.J. Reece, and A. Maxwell The C-terminal domain of the Escherichia coli DNA gyrase A subunit is a DNA-binding protein Nucleic Acids Res. 19 1991 1399 1405
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1399-1405
    • Reece, R.J.1    Maxwell, A.2
  • 34
    • 0034009520 scopus 로고    scopus 로고
    • Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
    • P. Schuck Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling Biophys. J. 78 2000 1606 1619
    • (2000) Biophys. J. , vol.78 , pp. 1606-1619
    • Schuck, P.1
  • 35
    • 0042622380 scopus 로고    scopus 로고
    • SWISS-MODEL: An automated protein homology-modeling server
    • T. Schwede, J. Kopp, N. Guex, and M.C. Peitsch SWISS-MODEL: an automated protein homology-modeling server Nucleic Acids Res. 31 2003 3381 3385
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3381-3385
    • Schwede, T.1    Kopp, J.2    Guex, N.3    Peitsch, M.C.4
  • 36
    • 0026910457 scopus 로고
    • Determination of the regularization parameter in indirect-transform methods using perceptual criteria
    • D.I. Svergun Determination of the regularization parameter in indirect-transform methods using perceptual criteria J. Appl. Crystallogr. 25 1992 495 503
    • (1992) J. Appl. Crystallogr. , vol.25 , pp. 495-503
    • Svergun, D.I.1
  • 37
    • 0029185933 scopus 로고
    • CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
    • D.I. Svergun, C. Barberato, and M.H.J. Koch CRYSOL - a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates J. Appl. Crystallogr. 28 1995 768 773
    • (1995) J. Appl. Crystallogr. , vol.28 , pp. 768-773
    • Svergun, D.I.1    Barberato, C.2    Koch, M.H.J.3
  • 38
    • 0035010533 scopus 로고    scopus 로고
    • Determination of domain structure of proteins from X-ray solution scattering
    • D.I. Svergun, M.V. Petoukhov, and M.H. Koch Determination of domain structure of proteins from X-ray solution scattering Biophys. J. 80 2001 2946 2953
    • (2001) Biophys. J. , vol.80 , pp. 2946-2953
    • Svergun, D.I.1    Petoukhov, M.V.2    Koch, M.H.3
  • 40
    • 0029856729 scopus 로고    scopus 로고
    • Contrasting enzymatic activities of topoisomerase IV and DNA gyrase from Escherichia coli
    • C. Ullsperger, and N.R. Cozzarelli Contrasting enzymatic activities of topoisomerase IV and DNA gyrase from Escherichia coli J. Biol. Chem. 271 1996 31549 31555
    • (1996) J. Biol. Chem. , vol.271 , pp. 31549-31555
    • Ullsperger, C.1    Cozzarelli, N.R.2
  • 41
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab initio shape determination in small-angle scattering
    • V.V. Volkov, and D.I. Svergun Uniqueness of ab initio shape determination in small-angle scattering J. Appl. Crystallogr. 36 2003 860 864
    • (2003) J. Appl. Crystallogr. , vol.36 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 42
    • 2442717681 scopus 로고    scopus 로고
    • Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria
    • M.K. Wall, L.A. Mitchenall, and A. Maxwell Arabidopsis thaliana DNA gyrase is targeted to chloroplasts and mitochondria Proc. Natl. Acad. Sci. USA 101 2004 7821 7826
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 7821-7826
    • Wall, M.K.1    Mitchenall, L.A.2    Maxwell, A.3
  • 43
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • J.C. Wang Cellular roles of DNA topoisomerases: a molecular perspective Nat. Rev. Mol. Cell Biol. 3 2002 430 440
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 44
    • 0030664213 scopus 로고    scopus 로고
    • Requirement of topoisomerase IV parC and parE genes for cell cycle progression and developmental regulation in Caulobacter crescentus
    • D. Ward, and A. Newton Requirement of topoisomerase IV parC and parE genes for cell cycle progression and developmental regulation in Caulobacter crescentus Mol. Microbiol. 26 1997 897 910
    • (1997) Mol. Microbiol. , vol.26 , pp. 897-910
    • Ward, D.1    Newton, A.2
  • 45
    • 0026428621 scopus 로고
    • Crystal structure of an N-terminal fragment of the DNA gyrase B protein
    • D.B. Wigley, G.J. Davies, E.J. Dodson, A. Maxwell, and G. Dodson Crystal structure of an N-terminal fragment of the DNA gyrase B protein Nature 351 1991 624 629
    • (1991) Nature , vol.351 , pp. 624-629
    • Wigley, D.B.1    Davies, G.J.2    Dodson, E.J.3    Maxwell, A.4    Dodson, G.5
  • 46
    • 0033607152 scopus 로고    scopus 로고
    • Locking the DNA gate of DNA gyrase: Investigating the effects on DNA cleavage and ATP hydrolysis
    • N.L. Williams, and A. Maxwell Locking the DNA gate of DNA gyrase: investigating the effects on DNA cleavage and ATP hydrolysis Biochemistry 38 1999 14157 14164
    • (1999) Biochemistry , vol.38 , pp. 14157-14164
    • Williams, N.L.1    Maxwell, A.2
  • 47
    • 0033550077 scopus 로고    scopus 로고
    • Probing the two-gate mechanism of DNA gyrase using cysteine cross-linking
    • N.L. Williams, and A. Maxwell Probing the two-gate mechanism of DNA gyrase using cysteine cross-linking Biochemistry 38 1999 13502 13511
    • (1999) Biochemistry , vol.38 , pp. 13502-13511
    • Williams, N.L.1    Maxwell, A.2


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