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Volumn 33, Issue 1, 2005, Pages 337-346

Multiple promoters are a common feature of mitochondrial genes in Arabidopsis

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ARGININE; COMPLEMENTARY DNA; CYSTEINE; GLUTAMINE; NUCLEOTIDE; RIBONUCLEASE; THREONINE; TRANSFERASE;

EID: 13744249250     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki179     Document Type: Article
Times cited : (106)

References (46)
  • 1
    • 0034235831 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris) L.) reveals a novel gene for tRNA(Cys)(GCA)
    • Kubo,T., Nishizawa,S., Sugawara,A., Itchoda,N., Estiati,A. and Mikami,T. (2000) The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris) L.) reveals a novel gene for tRNA(Cys)(GCA). Nucleic Acids Res., 28, 2571-2576.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2571-2576
    • Kubo, T.1    Nishizawa, S.2    Sugawara, A.3    Itchoda, N.4    Estiati, A.5    Mikami, T.6
  • 2
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366 924 nucleotides
    • Unseld,M., Marienfeld,J.R., Brandt,P. and Brennicke,A. (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366 924 nucleotides. Nature Genet., 15, 57-61.
    • (1997) Nature Genet. , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 3
    • 0344442430 scopus 로고    scopus 로고
    • The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): Comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana
    • Handa,H. (2003) The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res., 31, 5907-5916.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5907-5916
    • Handa, H.1
  • 4
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K. (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics, 268, 434-445.
    • (2002) Mol. Genet. Genomics , vol.268 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 5
    • 1842411934 scopus 로고    scopus 로고
    • Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis
    • Hedtke,B., Börner,T. and Weihe,A. (1997) Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science, 277, 809-811.
    • (1997) Science , vol.277 , pp. 809-811
    • Hedtke, B.1    Börner, T.2    Weihe, A.3
  • 6
    • 0034330546 scopus 로고    scopus 로고
    • One RNA polymerase serving two genomes
    • Hedtke,B., Börner,T. and Weihe,A. (2000) One RNA polymerase serving two genomes. EMBO Rep., 1, 435-440.
    • (2000) EMBO Rep. , vol.1 , pp. 435-440
    • Hedtke, B.1    Börner, T.2    Weihe, A.3
  • 7
    • 0036017866 scopus 로고    scopus 로고
    • Six active phage-type RNA polymerase genes in Nicotiana tabacum
    • Hedtke,B., Legen,J., Weihe,A., Herrmann,R.G. and Börner,T. (2002) Six active phage-type RNA polymerase genes in Nicotiana tabacum. Plant J., 30, 625-637.
    • (2002) Plant J. , vol.30 , pp. 625-637
    • Hedtke, B.1    Legen, J.2    Weihe, A.3    Herrmann, R.G.4    Börner, T.5
  • 8
  • 9
    • 0033167044 scopus 로고    scopus 로고
    • Identification and characterization of T3/T7 bacteriophage-like RNA polymerase sequences in wheat
    • Ikeda,T.M. and Gray,M.W. (1999) Identification and characterization of T3/T7 bacteriophage-like RNA polymerase sequences in wheat. Plant Mol. Biol., 40, 567-578.
    • (1999) Plant Mol. Biol. , vol.40 , pp. 567-578
    • Ikeda, T.M.1    Gray, M.W.2
  • 10
    • 0037094426 scopus 로고    scopus 로고
    • Two RpoT genes of Physcomitrella patens encode phage-type RNA polymerases with dual targeting to mitochondria and plastids
    • Richter,U., Kiessling,J., Hedtke,B., Decker,E., Reski,R., Börner,T. and Weihe,A. (2002) Two RpoT genes of Physcomitrella patens encode phage-type RNA polymerases with dual targeting to mitochondria and plastids. Gene, 290, 95-105.
    • (2002) Gene , vol.290 , pp. 95-105
    • Richter, U.1    Kiessling, J.2    Hedtke, B.3    Decker, E.4    Reski, R.5    Börner, T.6    Weihe, A.7
  • 11
    • 0029116754 scopus 로고
    • Mitochondrial transcription initiation: Promoter structures and RNA polymerases
    • Tracy,R.L. and Stern,D.B. (1995) Mitochondrial transcription initiation: promoter structures and RNA polymerases. Curr. Genet., 28, 205-216.
    • (1995) Curr. Genet. , vol.28 , pp. 205-216
    • Tracy, R.L.1    Stern, D.B.2
  • 12
    • 0344052659 scopus 로고    scopus 로고
    • Compilation and analysis of plant mitochondrial promoter sequences: An illustration of a divergent evolution between monocot and dicot mitochondria
    • Fey,J. and Marechal-Drouard,L. (1999) Compilation and analysis of plant mitochondrial promoter sequences: an illustration of a divergent evolution between monocot and dicot mitochondria. Biochem. Biophys. Res. Commun., 256, 409-414.
    • (1999) Biochem. Biophys. Res. Commun. , vol.256 , pp. 409-414
    • Fey, J.1    Marechal-Drouard, L.2
  • 13
    • 0027448713 scopus 로고
    • Architecture of the maize mitochondrial atp1 promoter as determined by linker-scanning and point mutagenesis
    • Rapp,W.D., Lupold,D.S., Mack,S. and Stern,D.B. (1993) Architecture of the maize mitochondrial atp1 promoter as determined by linker-scanning and point mutagenesis. Mol. Cell. Biol., 13 7232-7238.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 7232-7238
    • Rapp, W.D.1    Lupold, D.S.2    Mack, S.3    Stern, D.B.4
  • 14
    • 0026583747 scopus 로고
    • A conserved 11 nucleotide sequence contains an essential promoter element of the maize mitochondrial atp1 gene
    • Rapp,W.D. and Stern,D.B. (1992) A conserved 11 nucleotide sequence contains an essential promoter element of the maize mitochondrial atp1 gene. EMBO J., 11, 1065-1073.
    • (1992) EMBO J. , vol.11 , pp. 1065-1073
    • Rapp, W.D.1    Stern, D.B.2
  • 15
    • 0030808961 scopus 로고    scopus 로고
    • A conserved core element is functionally important for maize mitochondrial promoter activity in vitro
    • Caoile,A.G. and Stern,D.B. (1997) A conserved core element is functionally important for maize mitochondrial promoter activity in vitro. Nucleic Acids Res., 25, 4055-4060.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4055-4060
    • Caoile, A.G.1    Stern, D.B.2
  • 16
    • 0029086512 scopus 로고
    • A novel pea mitochondrial in vitro transcription system recognizes homologous and heterologous mRNA and tRNA promoters
    • Binder,S., Hatzack,F. and Brennicke,A. (1995) A novel pea mitochondrial in vitro transcription system recognizes homologous and heterologous mRNA and tRNA promoters. J. Biol. Chem., 270 22182-22189.
    • (1995) J. Biol. Chem. , vol.270 , pp. 22182-22189
    • Binder, S.1    Hatzack, F.2    Brennicke, A.3
  • 17
    • 0033537835 scopus 로고    scopus 로고
    • Continuous primary sequence requirements in the 18-nucleotide promoter of dicot plant mitochondria
    • Dombrowski,S., Hoffmann,M., Guha,C. and Binder,S. (1999) Continuous primary sequence requirements in the 18-nucleotide promoter of dicot plant mitochondria. J. Biol. Chem., 274, 10094-10099.
    • (1999) J. Biol. Chem. , vol.274 , pp. 10094-10099
    • Dombrowski, S.1    Hoffmann, M.2    Guha, C.3    Binder, S.4
  • 18
    • 0036071846 scopus 로고    scopus 로고
    • Functional importance of nucleotide identities within the pea atp9 mitochondrial promoter sequence
    • Hoffmann,M. and Binder,S. (2002) Functional importance of nucleotide identities within the pea atp9 mitochondrial promoter sequence. J. Mol. Biol., 320, 943-950.
    • (2002) J. Mol. Biol. , vol.320 , pp. 943-950
    • Hoffmann, M.1    Binder, S.2
  • 19
    • 0032903448 scopus 로고    scopus 로고
    • Organellar RNA polymerases of higher plants
    • Hess,W.R. and Börner,T. (1999) Organellar RNA polymerases of higher plants. Int. Rev. Cytol., 190, 1-59.
    • (1999) Int. Rev. Cytol. , vol.190 , pp. 1-59
    • Hess, W.R.1    Börner, T.2
  • 20
    • 0030266747 scopus 로고    scopus 로고
    • Regulation of gene expression in plant mitochondria
    • Binder,S., Marchfelder,A. and Brennicke,A. (1996) Regulation of gene expression in plant mitochondria. Plant Mol. Biol., 32 303-314.
    • (1996) Plant Mol. Biol. , vol.32 , pp. 303-314
    • Binder, S.1    Marchfelder, A.2    Brennicke, A.3
  • 21
    • 0028821187 scopus 로고
    • Evidence for a novel mitochondrial promoter preceding the cox2 gene of perennial teosintes
    • Newton,K.J., Winberg,B., Yamato,K., Lupold,S. and Stern,D.B. (1995) Evidence for a novel mitochondrial promoter preceding the cox2 gene of perennial teosintes. EMBO J., 14, 585-593.
    • (1995) EMBO J. , vol.14 , pp. 585-593
    • Newton, K.J.1    Winberg, B.2    Yamato, K.3    Lupold, S.4    Stern, D.B.5
  • 22
    • 0036010847 scopus 로고    scopus 로고
    • Nuclear identity specifies transcriptional initiation in plant mitochondria
    • Edqvist,J. and Bergman,P. (2002) Nuclear identity specifies transcriptional initiation in plant mitochondria. Plant Mol. Biol., 49, 59-68.
    • (2002) Plant Mol. Biol. , vol.49 , pp. 59-68
    • Edqvist, J.1    Bergman, P.2
  • 23
    • 2342511519 scopus 로고    scopus 로고
    • Chloroplast development affects expression of phage-type RNA polymerases in barley leaves
    • Emanuel,C., Weihe,A., Graner,A., Hess,W.R. and Börner,T. (2004) Chloroplast development affects expression of phage-type RNA polymerases in barley leaves. Plant J., 38, 460-472.
    • (2004) Plant J. , vol.38 , pp. 460-472
    • Emanuel, C.1    Weihe, A.2    Graner, A.3    Hess, W.R.4    Börner, T.5
  • 24
    • 0001653543 scopus 로고    scopus 로고
    • On mitochondrial promoters in Arabidopsis thaliana and other flowering plants
    • Möller,I.M., Glaser,E. and Glimelius,K. (eds.), Backhuys Publishers, The Netherlands
    • Dombrowski,S., Hoffmann,M., Kuhn,J., Brennicke,A. and Binder,S. (1998) On mitochondrial promoters in Arabidopsis thaliana and other flowering plants. In Möller,I.M., Glaser,E. and Glimelius,K. (eds.), Plant Mitochondria. Backhuys Publishers, The Netherlands, pp. 165-170.
    • (1998) Plant Mitochondria , pp. 165-170
    • Dombrowski, S.1    Hoffmann, M.2    Kuhn, J.3    Brennicke, A.4    Binder, S.5
  • 25
    • 0033044938 scopus 로고    scopus 로고
    • Transcription signals of mitochondrial and nuclear genes for mitochondrial proteins in dicot plants
    • Brennicke,A., Zabaleta,E., Dombrowski,S., Hoffmann,M. and Binder,S. (1999) Transcription signals of mitochondrial and nuclear genes for mitochondrial proteins in dicot plants. J. Hered., 90, 345-350.
    • (1999) J. Hered. , vol.90 , pp. 345-350
    • Brennicke, A.1    Zabaleta, E.2    Dombrowski, S.3    Hoffmann, M.4    Binder, S.5
  • 26
    • 0029846069 scopus 로고    scopus 로고
    • Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato and Arabidopsis
    • Giese,A., Thalheim,C., Brennicke,A. and Binder,S. (1996) Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato and Arabidopsis. Mol. Gen. Genet., 252, 429-436.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 429-436
    • Giese, A.1    Thalheim, C.2    Brennicke, A.3    Binder, S.4
  • 27
    • 0029845782 scopus 로고    scopus 로고
    • Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis
    • Bensing,B.A., Meyer,B.J. and Dunny,G.M. (1996) Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis. Proc. Natl Acad. Sci. USA, 93 7794-7799.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7794-7799
    • Bensing, B.A.1    Meyer, B.J.2    Dunny, G.M.3
  • 29
    • 0037592860 scopus 로고    scopus 로고
    • Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4
    • Vogel.J., Axmann,I.M., Herzel.H. and Hess.W.R. (2003) Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4. Nucleic Acids Res., 31, 2890-2899.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2890-2899
    • Vogel, J.1    Axmann, I.M.2    Herzel, H.3    Hess, W.R.4
  • 30
    • 0025788543 scopus 로고
    • Characterization of transcription initiation sites on the soybean mitochondrial genome allows identification of a transcription-associated sequence motif
    • Brown,G.G., Auchincloss.A.H., Covello.P.S., Gray.M.W., Menassa,R. and Singh,M. (1991) Characterization of transcription initiation sites on the soybean mitochondrial genome allows identification of a transcription-associated sequence motif. Mol. Gen. Genet., 228, 345-355.
    • (1991) Mol. Gen. Genet. , vol.228 , pp. 345-355
    • Brown, G.G.1    Auchincloss, A.H.2    Covello, P.S.3    Gray, M.W.4    Menassa, R.5    Singh, M.6
  • 31
    • 0028108315 scopus 로고
    • Transcription initiation sites for the potato mitochondrial gene coding for subunit 9 of ATP synthase (atp9)
    • Lizama,L., Holuigue.L. and Jordana,X. (1994) Transcription initiation sites for the potato mitochondrial gene coding for subunit 9 of ATP synthase (atp9). FEBS Lett., 349, 243-248.
    • (1994) FEBS Lett. , vol.349 , pp. 243-248
    • Lizama, L.1    Holuigue, L.2    Jordana, X.3
  • 32
    • 0028384731 scopus 로고
    • Flower-enhanced expression of a nuclear-encoded mitochondrial respiratory protein is associated with changes in mitochondrion number
    • Huang,J., Struck,F., Matzinger,D.F. and Levings,C.S., III (1994) Flower-enhanced expression of a nuclear-encoded mitochondrial respiratory protein is associated with changes in mitochondrion number. Plant Cell, 6, 439-448.
    • (1994) Plant Cell , vol.6 , pp. 439-448
    • Huang, J.1    Struck, F.2    Matzinger, D.F.3    Levings III, C.S.4
  • 33
    • 0028448465 scopus 로고
    • Cell-specific regulation of gene expression in mitochondria during anther development in sunflower
    • Smart,C.J., Moneger,F. and Leaver,C.J. (1994) Cell-specific regulation of gene expression in mitochondria during anther development in sunflower. Plant Cell, 6, 811-825.
    • (1994) Plant Cell , vol.6 , pp. 811-825
    • Smart, C.J.1    Moneger, F.2    Leaver, C.J.3
  • 34
    • 0033524914 scopus 로고    scopus 로고
    • The maize mitochondrial cox2 gene has five promoters in two genomic regions, including a complex promoter consisting of seven overlapping units
    • Lupold,D.S., Caoile,A.G. and Stern.D.B. (1999) The maize mitochondrial cox2 gene has five promoters in two genomic regions, including a complex promoter consisting of seven overlapping units. J. Biol. Chem., 274, 3897-3903.
    • (1999) J. Biol. Chem. , vol.274 , pp. 3897-3903
    • Lupold, D.S.1    Caoile, A.G.2    Stern, D.B.3
  • 35
    • 3242837829 scopus 로고
    • Yeast mitochondrial genomes consisting of only A.T base pairs replicate and exhibit suppressiveness
    • Fangman,W.L. and Dujon,B. (1984) Yeast mitochondrial genomes consisting of only A.T base pairs replicate and exhibit suppressiveness. Proc. Natl Acad. Sci. USA, 81, 7156-7160.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 7156-7160
    • Fangman, W.L.1    Dujon, B.2
  • 36
    • 2342489299 scopus 로고    scopus 로고
    • Overexpression of phage-type RNA polymerase RpoTp in tobacco demonstrates its role in chloroplast transcription by recognizing a distinct promoter type
    • Liere,K., Kaden,D., Maliga,P. and BörnerJ. (2004) Overexpression of phage-type RNA polymerase RpoTp in tobacco demonstrates its role in chloroplast transcription by recognizing a distinct promoter type. Nucleic Acids Res., 32, 1159-1165.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1159-1165
    • Liere, K.1    Kaden, D.2    Maliga, P.3    Börner, J.4
  • 37
    • 0025249858 scopus 로고
    • Contrasting modes and tempos of genome evolution in land plant organelles
    • Palmer,J.D. (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet., 6, 115-120.
    • (1990) Trends Genet. , vol.6 , pp. 115-120
    • Palmer, J.D.1
  • 38
    • 0037079666 scopus 로고    scopus 로고
    • RT-PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria
    • Kuhn,J. and Binder,S. (2002) RT-PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria. Nucleic Acids Res., 30, 439-446.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 439-446
    • Kuhn, J.1    Binder, S.2
  • 39
    • 0024109925 scopus 로고
    • Numerous transcription initiation sites exist for the maize mitochondrial genes for subunit 9 of the ATP synthase and subunit 3 ofcytochrome oxidase
    • Mulligan,R.M., Lau,G.T. and Walbot,V. (1988) Numerous transcription initiation sites exist for the maize mitochondrial genes for subunit 9 of the ATP synthase and subunit 3 ofcytochrome oxidase. Proc. Natl Acad. Sci. USA, 85, 7998-8002.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 7998-8002
    • Mulligan, R.M.1    Lau, G.T.2    Walbot, V.3
  • 40
    • 0030117083 scopus 로고    scopus 로고
    • Multiple initiation sites for transcription of a gene for subunit 1 of F1-ATPase (atp1) in rice mitochondria
    • Nakazono,M., Ishikawa,M., Yoshida,K.T., Tsutsumi,N. and Hirai,A. (1996) Multiple initiation sites for transcription of a gene for subunit 1 of F1-ATPase (atp1) in rice mitochondria. Curr. Genet. 19, 417-422.
    • (1996) Curr. Genet. , vol.19 , pp. 417-422
    • Nakazono, M.1    Ishikawa, M.2    Yoshida, K.T.3    Tsutsumi, N.4    Hirai, A.5
  • 41
    • 0029809949 scopus 로고    scopus 로고
    • A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria
    • Nakazono,M., Nishiwaki,S., Tsutsumi,N. and Hirai,A. (1996) A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria. Mol. Gen. Genet., 252, 371-378.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 371-378
    • Nakazono, M.1    Nishiwaki, S.2    Tsutsumi, N.3    Hirai, A.4
  • 42
    • 0030664991 scopus 로고    scopus 로고
    • Transcriptional initiation sites in sorghum mitochondrial DNA indicate conserved and variable features
    • Yan,B. and Pring,D.R. (1997) Transcriptional initiation sites in sorghum mitochondrial DNA indicate conserved and variable features. Curr. Genet., 32, 287-295.
    • (1997) Curr. Genet. , vol.32 , pp. 287-295
    • Yan, B.1    Pring, D.R.2
  • 43
    • 0034252265 scopus 로고    scopus 로고
    • RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria
    • Giege,P., Hoffmann,M., Binder,S. and Brennicke,A. (2000) RNA degradation buffers asymmetries of transcription in Arabidopsis mitochondria. EMBO Rep., 1, 164-170.
    • (2000) EMBO Rep. , vol.1 , pp. 164-170
    • Giege, P.1    Hoffmann, M.2    Binder, S.3    Brennicke, A.4
  • 44
    • 0027314227 scopus 로고
    • Distribution of maize mitochondrial transcripts in polysomal RNA: Evidence for non-selectivity in recruitment of mRNAs
    • Yang,A.J. and Mulligan,R.M. (1993) Distribution of maize mitochondrial transcripts in polysomal RNA: evidence for non-selectivity in recruitment of mRNAs. Curr. Genet., 23, 532-536.
    • (1993) Curr. Genet. , vol.23 , pp. 532-536
    • Yang, A.J.1    Mulligan, R.M.2
  • 45
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider,T.D. and Stephens,R.M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2


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