-
1
-
-
0027304542
-
Nucleotide-sequence requirements for self-cleavage of Neurospora VS RNA
-
Guo,H.C.T., Deabreu,D.M., Tillier,E.R.M., Saville,B.J., Olive,J.E. and Collins,R.A. (1993) Nucleotide-sequence requirements for self-cleavage of Neurospora VS RNA. J. Mol. Biol., 232, 351-361.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 351-361
-
-
Guo, H.C.T.1
Deabreu, D.M.2
Tillier, E.R.M.3
Saville, B.J.4
Olive, J.E.5
Collins, R.A.6
-
2
-
-
0029011972
-
A secondary-structure model for the self-cleaving region of Neurospora VS RNA
-
Beattie,T.L., Olive,J.E. and Collins,R.A. (1995) A secondary-structure model for the self-cleaving region of Neurospora VS RNA. Proc. Natl Acad. Sci. USA, 92, 4686-4690.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 4686-4690
-
-
Beattie, T.L.1
Olive, J.E.2
Collins, R.A.3
-
3
-
-
0028855671
-
Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from Neurospora VS RNA
-
Guo,H.C.T. and Collins,R.A. (1995) Efficient trans cleavage of a stem-loop RNA substrate by a ribozyme derived from Neurospora VS RNA. EMBO J, 14, 368-376.
-
(1995)
EMBO J.
, vol.14
, pp. 368-376
-
-
Guo, H.C.T.1
Collins, R.A.2
-
4
-
-
0029948820
-
A long-range pseudoknot is required for activity of the Neurospora VS ribozyme
-
Rastogi,T., Beattie,T.L., Olive,J.E. and Collins,R.A. (1996) A long-range pseudoknot is required for activity of the Neurospora VS ribozyme. EMBO J, 15, 2820-2825.
-
(1996)
EMBO J.
, vol.15
, pp. 2820-2825
-
-
Rastogi, T.1
Beattie, T.L.2
Olive, J.E.3
Collins, R.A.4
-
5
-
-
0033680079
-
Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis
-
Andersen,A.A. and Collins,R.A. (2000) Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis. Mol. Cell., 5, 469-478.
-
(2000)
Mol. Cell
, vol.5
, pp. 469-478
-
-
Andersen, A.A.1
Collins, R.A.2
-
6
-
-
0034940798
-
Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme
-
Andersen,A.A. and Collins,R.A. (2001) Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme. Proc. Natl Acad. Sci. USA, 98, 7730-7735.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7730-7735
-
-
Andersen, A.A.1
Collins, R.A.2
-
7
-
-
0038810208
-
NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site
-
Hoffmann,B., Mitchell,G.T., Gendron,P., Major,F., Andersen,A.A., Collins,R.A. and Legault,P. (2003) NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site. Proc. Natl Acad. Sci. USA, 100, 7003-7008.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7003-7008
-
-
Hoffmann, B.1
Mitchell, G.T.2
Gendron, P.3
Major, F.4
Andersen, A.A.5
Collins, R.A.6
Legault, P.7
-
8
-
-
0034967913
-
A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA
-
Flinders,J. and Dieckmann,T. (2001) A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA. J. Mol. Biol., 308, 665-679.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 665-679
-
-
Flinders, J.1
Dieckmann, T.2
-
9
-
-
0034538971
-
Structure of the ribozyme substrate hairpin of Neurospora VS RNA: A close look at the cleavage site
-
Michiels,P.J.A., Schouten,C.H.J., Hilbers,C.W. and Heus,H.A. (2000) Structure of the ribozyme substrate hairpin of Neurospora VS RNA: a close look at the cleavage site. RNA, 6, 1821-1832.
-
(2000)
RNA
, vol.6
, pp. 1821-1832
-
-
Michiels, P.J.A.1
Schouten, C.H.J.2
Hilbers, C.W.3
Heus, H.A.4
-
10
-
-
0035476689
-
Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme
-
Hiley,S.L. and Collins,R.A. (2001) Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme. EMBO J, 20, 5461-5469.
-
(2001)
EMBO J.
, vol.20
, pp. 5461-5469
-
-
Hiley, S.L.1
Collins, R.A.2
-
11
-
-
0035965132
-
The A730 loop is an important component of the active site of the VS ribozyme
-
Lafontaine,D.A., Wilson,T.J., Norman,D.G. and Lilley,D.M.J. (2001) The A730 loop is an important component of the active site of the VS ribozyme. J. Mol. Biol., 312, 663-674.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 663-674
-
-
Lafontaine, D.A.1
Wilson, T.J.2
Norman, D.G.3
Lilley, D.M.J.4
-
12
-
-
0037093486
-
The global structure of the VS ribozyme
-
Lafontaine,D.A., Norman,D.G. and Lilley,D.M.J. (2002) The global structure of the VS ribozyme. EMBO J, 21, 2461-2471.
-
(2002)
EMBO J.
, vol.21
, pp. 2461-2471
-
-
Lafontaine, D.A.1
Norman, D.G.2
Lilley, D.M.J.3
-
13
-
-
0035869008
-
Structure, folding and activity of the VS ribozyme: Importance of the 2-3-6 helical junction
-
Lafontaine,D.A., Norman,D.G. and Lilley,D.M.J. (2001) Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction. EMBO J, 20, 1415-1424.
-
(2001)
EMBO J.
, vol.20
, pp. 1415-1424
-
-
Lafontaine, D.A.1
Norman, D.G.2
Lilley, D.M.J.3
-
14
-
-
0037009368
-
4-thio-U cross-linking identifies the active site of the VS ribozyme
-
Hiley,S.L., Sood,V.D., Fan,J. and Collins,R.A. (2002) 4-thio-U cross-linking identifies the active site of the VS ribozyme. EMBO J, 21, 4691-4698.
-
(2002)
EMBO J.
, vol.21
, pp. 4691-4698
-
-
Hiley, S.L.1
Sood, V.D.2
Fan, J.3
Collins, R.A.4
-
15
-
-
0036396544
-
Functional group requirements in the probable active site of the VS ribozyme
-
Lafontaine,D.A., Wilson,T.J., Zhao,Z.-Y. and Lilley,D.M.J. (2002) Functional group requirements in the probable active site of the VS ribozyme. J. Mol. Biol., 323, 23-34.
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 23-34
-
-
Lafontaine, D.A.1
Wilson, T.J.2
Zhao, Z.-Y.3
Lilley, D.M.J.4
-
16
-
-
0037446518
-
Ionisation of a critical adenosine residue in the Neurospora Varkud satellite ribozyme active site
-
Jones,F.D. and Strobel,S.A. (2003) Ionisation of a critical adenosine residue in the Neurospora Varkud satellite ribozyme active site. Biochemistry, 42, 4265-4276.
-
(2003)
Biochemistry
, vol.42
, pp. 4265-4276
-
-
Jones, F.D.1
Strobel, S.A.2
-
17
-
-
0036488944
-
The contribution of 2′-hydoxyls to the cleavage activity of the Neurospora VS ribozyme
-
Sood,V.D., Yekta,S. and Collins,R.A. (2002) The contribution of 2′-hydoxyls to the cleavage activity of the Neurospora VS ribozyme. Nucleic Acids Res., 30, 1132-1138.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1132-1138
-
-
Sood, V.D.1
Yekta, S.2
Collins, R.A.3
-
18
-
-
0036440685
-
The role of magnesium ions and 2′-hydroxyl groups in the VS ribozyme-substrate interaction
-
Tzokov,S.B., Murray,I.A. and Grasby,J.A. (2002) The role of magnesium ions and 2′-hydroxyl groups in the VS ribozyme-substrate interaction. J. Mol. Biol., 324, 215-226.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 215-226
-
-
Tzokov, S.B.1
Murray, I.A.2
Grasby, J.A.3
-
19
-
-
0032475835
-
Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme
-
Sood,V.D., Beattie,T.L. and Collins,R.A. (1998) Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme. J. Mol. Biol., 282, 741-750.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 741-750
-
-
Sood, V.D.1
Beattie, T.L.2
Collins, R.A.3
-
20
-
-
0030967825
-
Metal ions play a passive role in the hairpin ribozyme catalysed reaction
-
Young,K.J., Gill,F. and Grasby,J.A. (1997) Metal ions play a passive role in the hairpin ribozyme catalysed reaction. Nucleic Acids Res., 25, 3760-3766.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3760-3766
-
-
Young, K.J.1
Gill, F.2
Grasby, J.A.3
-
21
-
-
0036219133
-
RNA footprinting analysis using ion pair reverse phase liquid chromatography
-
Dickman,M.J., Conroy,M.J., Grasby,J.A. and Hornby,D.P. (2002) RNA footprinting analysis using ion pair reverse phase liquid chromatography. RNA, 8, 247-251.
-
(2002)
RNA
, vol.8
, pp. 247-251
-
-
Dickman, M.J.1
Conroy, M.J.2
Grasby, J.A.3
Hornby, D.P.4
-
22
-
-
13444269065
-
Real time kinetics of ribozyme reactions
-
Krupp,G. and Gaur,R.K. (eds.), Eaton Publishing, Narwick, MA
-
Singh,K.K., Parwaresch,R. and Krupp,G. (2000) Real time kinetics of ribozyme reactions. In Krupp,G. and Gaur,R.K. (eds.), Ribozyme Biochemistry and Biotechnology. Eaton Publishing, Narwick, MA, pp. 351-370.
-
(2000)
Ribozyme Biochemistry and Biotechnology
, pp. 351-370
-
-
Singh, K.K.1
Parwaresch, R.2
Krupp, G.3
-
23
-
-
0034651754
-
RNA double cleavage by a hairpin-derived twin ribozyme
-
Schmidt,C., Welz,R. and Muller,S. (2000) RNA double cleavage by a hairpin-derived twin ribozyme. Nucleic Acids Res., 28, 886-894.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 886-894
-
-
Schmidt, C.1
Welz, R.2
Muller, S.3
-
24
-
-
3843111134
-
The synthesis and properties of oligoribonucleotide-spermine conjugates
-
Marsh,A., Williams,D.M. and Grasby,J.A. (2004) The synthesis and properties of oligoribonucleotide-spermine conjugates. Organic and Biomolecular Chemistry, 2, 2103-2112.
-
(2004)
Organic and Biomolecular Chemistry
, vol.2
, pp. 2103-2112
-
-
Marsh, A.1
Williams, D.M.2
Grasby, J.A.3
-
25
-
-
0031828144
-
Hammerhead ribozyme kinetics
-
Stage-Zimmerman,T.K. and Uhlenbeck,O.C. (1998) Hammerhead ribozyme kinetics. RNA, 4, 875-889.
-
(1998)
RNA
, vol.4
, pp. 875-889
-
-
Stage-Zimmerman, T.K.1
Uhlenbeck, O.C.2
-
26
-
-
0030920270
-
Kinetic mechanism of the hairpin ribozyme
-
Esteban,J.A., Banerjee,A.R. and Burke,J.M. (1997) Kinetic mechanism of the hairpin ribozyme. J. Biol. Chem., 272, 13629-13639.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 13629-13639
-
-
Esteban, J.A.1
Banerjee, A.R.2
Burke, J.M.3
-
27
-
-
0025265468
-
Substrate sequence effects on 'hammerhead' RNA catalytic efficiency
-
Fedor,M.J. and Uhlenbeck,O.C. (1990) Substrate sequence effects on 'hammerhead' RNA catalytic efficiency. Proc. Natl Acad. Sci. USA, 87, 1668-1672.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 1668-1672
-
-
Fedor, M.J.1
Uhlenbeck, O.C.2
-
28
-
-
0942279692
-
Efficient, pH-dependent RNA ligation by the VS ribozyme in trans
-
McLeod,A.C. and Lilley,D.M.J. (2004) Efficient, pH-dependent RNA ligation by the VS ribozyme in trans. Biochemistry, 43, 1118-1125.
-
(2004)
Biochemistry
, vol.43
, pp. 1118-1125
-
-
McLeod, A.C.1
Lilley, D.M.J.2
-
29
-
-
1242297095
-
Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme
-
Zamel,R., Poon,A., Jaikaran,D., Andersen,A., Olive,J., De Abreu,D. and Collins,R.A. (2004) Exceptionally fast self-cleavage by a Neurospora Varkud satellite ribozyme. Proc. Natl Acad. Sci. USA, 101, 1467-1472.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1467-1472
-
-
Zamel, R.1
Poon, A.2
Jaikaran, D.3
Andersen, A.4
Olive, J.5
De Abreu, D.6
Collins, R.A.7
-
30
-
-
0035945247
-
An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5′ and 3′-termini
-
Jones,F.D., Ryder,S.P. and Strobel,S.A. (2001) An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5′ and 3′-termini. Nucleic Acids Res., 29, 5115-5120.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 5115-5120
-
-
Jones, F.D.1
Ryder, S.P.2
Strobel, S.A.3
-
31
-
-
0036760718
-
Developments in RNA chemistry, a personal view
-
Eckstein,F. (2002) Developments in RNA chemistry, a personal view. Biochimie, 84, 841-848.
-
(2002)
Biochimie
, vol.84
, pp. 841-848
-
-
Eckstein, F.1
-
32
-
-
0032707136
-
Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain
-
Basu,S. and Strobel,S.A. (1999) Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain. RNA, 5, 1399-1407.
-
(1999)
RNA
, vol.5
, pp. 1399-1407
-
-
Basu, S.1
Strobel, S.A.2
-
33
-
-
0034081812
-
An unconventional origin of metal-ion rescue and inhibition in the Tetrahymena group I ribozyme reaction
-
Shan,S.-O. and Herschlag,D. (2000) An unconventional origin of metal-ion rescue and inhibition in the Tetrahymena group I ribozyme reaction. RNA, 6, 795-813.
-
(2000)
RNA
, vol.6
, pp. 795-813
-
-
Shan, S.-O.1
Herschlag, D.2
-
34
-
-
0027416218
-
Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA
-
Collins,R.A. and Olive,J.E. (1993) Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA. Biochemistry, 32, 2795-2799.
-
(1993)
Biochemistry
, vol.32
, pp. 2795-2799
-
-
Collins, R.A.1
Olive, J.E.2
-
35
-
-
0022418143
-
Bond order and charge localization in nucleoside phosphorothioates
-
Frey,P.A. and Sammons,R.D. (1985) Bond order and charge localization in nucleoside phosphorothioates. Science, 228, 541-545.
-
(1985)
Science
, vol.228
, pp. 541-545
-
-
Frey, P.A.1
Sammons, R.D.2
-
36
-
-
0000991444
-
Phosphorus-oxygen bond order in adenosine 5′-O-phosphorothioate dianion
-
Iyengar,R., Eckstein,F. and Frey,P.A. (1984) Phosphorus-oxygen bond order in adenosine 5′ -O-phosphorothioate dianion. J. Am. Chem. Soc., 106, 8309-8310.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 8309-8310
-
-
Iyengar, R.1
Eckstein, F.2
Frey, P.A.3
-
37
-
-
0027247579
-
Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena
-
Christian,E.L. and Yarus,M. (1993) Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena. Biochemistry, 32, 4475-4480.
-
(1993)
Biochemistry
, vol.32
, pp. 4475-4480
-
-
Christian, E.L.1
Yarus, M.2
-
38
-
-
0024554271
-
Determination of RNA-Protein contacts using thiophosphate substitutions
-
Milligan,J.F. and Uhlenbeck,O.C. (1989) Determination of RNA-Protein contacts using thiophosphate substitutions. Biochemistry 28, 2849-2855.
-
(1989)
Biochemistry
, vol.28
, pp. 2849-2855
-
-
Milligan, J.F.1
Uhlenbeck, O.C.2
-
39
-
-
0028252696
-
Ribonuclease revisited: Catalysis via the classical general acid-base mechanism of a triester-like mechanism
-
Herschlag,D. (1994) Ribonuclease revisited: catalysis via the classical general acid-base mechanism of a triester-like mechanism. J. Am. Chem. Soc., 116, 11631-11635.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 11631-11635
-
-
Herschlag, D.1
-
40
-
-
0037073473
-
Rearrangement of substrate secondary structure facilitates binding to the Neurospora VS ribozyme
-
Zamel,R. and Collins,R.A. (2002) Rearrangement of substrate secondary structure facilitates binding to the Neurospora VS ribozyme. J. Mol. Biol., 324, 903-915.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 903-915
-
-
Zamel, R.1
Collins, R.A.2
-
41
-
-
0032571245
-
Structural principles for the inhibition of the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates
-
Brautigam,C.A. and Steitz,T.A. (1998) Structural principles for the inhibition of the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I by phosphorothioates. J. Mol. Biol., 277, 363-377.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 363-377
-
-
Brautigam, C.A.1
Steitz, T.A.2
-
42
-
-
0032192761
-
The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone
-
Murray,J.B., Seyhan,A.A., Walter,N.G., Burke,J.M. and Scott,W.G. (1998) The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone. Chemistry & Biology, 5, 587-595.
-
(1998)
Chemistry & Biology
, vol.5
, pp. 587-595
-
-
Murray, J.B.1
Seyhan, A.A.2
Walter, N.G.3
Burke, J.M.4
Scott, W.G.5
-
43
-
-
0018796264
-
Diastereoisomers of 5′-O-adenosyl-3′-O-uridyl phosphorothioate: Chemical synthesis and enzymatic properties
-
Burgers,P.M.J. and Eckstein,F. (1979) Diastereoisomers of 5′-O-adenosyl-3′-O-uridyl phosphorothioate: chemical synthesis and enzymatic properties. Biochemistry, 18, 592-596.
-
(1979)
Biochemistry
, vol.18
, pp. 592-596
-
-
Burgers, P.M.J.1
Eckstein, F.2
|